BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12940.1
Length=2215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929017 jgi|Araly1|929017|scaffold_301474.1 2359 0.0
> Ahg929017 jgi|Araly1|929017|scaffold_301474.1
Length=1483
Score = 2359 bits (1277), Expect = 0.0
Identities = 1390/1445 (96%), Gaps = 5/1445 (0%)
Strand=Plus/Plus
Query 536 GGATTTTGGTGTATAGTTTGATGATGGCAGGAAATGGAATGCCTACATTGGGTCGTGTCA 595
||| || ||||||||| || ||||||||||||||||||||| |||| |||| |||||||
Sbjct 1 GGAATTCGGTGTATAG-TT--TGATGGCAGGAAATGGAATGCATACACTGGGCCGTGTCA 57
Query 596 AGGTTTGTGATTTAGTTCCCAGTGAAGGTCTACCTTCTGATTCTTACAAGTTAGCGGTGA 655
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 58 AGGTTTGTGATTTAGCTCCCAGTGAAGGTCTACCTTCTGATTCTTACAAGTTAGCAGTGA 117
Query 656 CTACATTGTCTCAATCTCTGGCACAGTACTCTGCAGCCATCATTCAGTTTCCTGCTAGCG 715
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 CTACATTGTCTCAGTCTCTGGCGCAGTACTCTGCAGCCATCATTCAGTTTCCTGCTAGCG 177
Query 716 ATGGAGCCCTCCTTAGATCCGGTCTTGATTCTGCTCGGCTTTATTTTCACCAGAGAGATT 775
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 ATGGAGCCCTCCTTAGATCCGGTCTTGATTCTGCTCGGCTCTATTTTCACCAGAGAGATT 237
Query 776 CATATCCAGCCACTAATAATATGATCCACACAAATGATTCACAAGAATGGTGCAAGACTT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CATATCCAGCCACTAATAATATGATCCACACAAATGATTCACAAGAATGGTGCAAGACTT 297
Query 836 CTGGCTACTATGCAGATCCTCAGTCGTGGCAAGAGAGTTACGAGTATAGACCTGGTTTGA 895
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 298 CTGGCTACTATGCAGATCCTCAGTCGTGGCAAGAGAGTTACGAGTACAGACCCGGTTTGA 357
Query 896 CTCCGACCGAGCCAAGCAATTCTATGGAGTTCCCTCCTGCTGGTTTGCCTGATATCTTTG 955
| || |||||||||| ||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 358 CCCCTACCGAGCCAACCAATTCTATAGATTTCCCTCCAGCTGGTTTGCCTGATATCTTTG 417
Query 956 CTTTACTAGGAAAAGCTGCTCGTGTAGTTCTTGATGCCATTGGTTTCTATTTGAACTTGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTTTACTAGGAAAAGCTGCTCGTGTAGTTCTTGATGCCATTGGTTTCTATTTGAACTTGA 477
Query 1016 GAAGCTGTCCATTTACTGAGATTCTTGATAATGTCCCTTTGAGAAATTGTGAGGTATCGT 1075
||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||
Sbjct 478 GAAGCTGTCCATTTACTGAGATTCTCGATAATGTCCCTTTGAGGAATGGTGAGATATCGT 537
Query 1076 CTTCTGTGTTATCTGTTTGCTGTTATGCTAGGCCATCCTTTCATGGAGCACAGCACCATA 1135
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 538 CCTCTGTGTTATCTGTTTGCTGTTATGCTAGGCCGTCTTTTCATGGAGCACAGCACCATA 597
Query 1136 GCTTAACAGAAGACGAGCAGCTTATCCTGTATTCAGACCATGATCACCAACTTGACAAGA 1195
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 CCCTAACAGAAGACGAGCAGCTTATCCTGTATGCAGACCATGATCACCAACTTGACAAGA 657
Query 1196 GTCTGATCTCATTTGTGAAATCAGATAAGGCGGGGTTGCACATCAGGGACATGCATGGGC 1255
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 658 GTCTGATCTCATTTGTGAAATCAGATAAGGCGGGGTTCCACATCAGGGACATGCACGGTC 717
Query 1256 AATGGATTTTAGTTGATGTGGATCTTGGTCCTCAAGAGGCTGTTGTGTACCCGGGGCTAG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AATGGATTTTAGTTGATGTGGATCTTGGTCCTCAAGAGGCTGTTGTGTACCCGGGGCTAG 777
Query 1316 CTCTTTACCAGGCTACAGCGGGGTATGTGAGTCCCGCAGTGCACAGAACCGATTTGAACA 1375
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 778 CTCTTTACCAGGCTACAGCGGGGTATGTGAGTCCTGCAGTGCACAGAACTGATTTAAACA 837
Query 1376 GTCTGCAAGGAAGTATAGAAGGGAGGTTCTCCTTGGCCTTCAAACTCATGCCAAAATCAA 1435
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 GTCTGCAAGGAAGTATAGAAGGGAGGTTCTCCCTGGCCTTCAAACTCATGCCAAAATCAA 897
Query 1436 TGACCAATCTGAGTTGCTCGGAGATGAGAGCAGCAGGTCATGGTGTTGAAGCTCAGTTTC 1495
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 898 TGACCAATCTGAGTTGCTCAGAGATGAGAGCAGCAGGTCATGGTGTTGAAGCTCAATTTC 957
Query 1496 AGCTCCCCGTTTCTGTTGATGACTTCATGCAGAGATCTCACTCAAATGATGAACTTTTTA 1555
|||| || ||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 958 AGCTTCCGGTTTCAGTCGATGACTTCATGCAGAGATCTCACTCAAATGATGAACTCTTTA 1017
Query 1556 ACAGACAGACTTTGCAAAGCTTCATCGTCCCTCAATCCCAGGATGGATCAATGAAACAGC 1615
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 ACAGACAGACTTTGCAAAGCTTCAGCGTCCCTCAATCCCAGGATGGATCAATGAAACAGC 1077
Query 1616 TGAAAAAA-CGGAGGAAGAGTGATTCTAGATGCAAACCACTACCACCTTCAAAACGGCTG 1674
| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1078 T-AAAAAAGCGGAGGAAGAGCGATTCTAGATGCAAACCACTACCACCTTCAAAGCGGCTG 1136
Query 1675 AGGTTAGAAGCACAGAGAGTTCTCAAGGAACGAGTTCAGGAGATTGCAGATAAAAAAGGA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGGTTAGAAGCACAGAGAGTTCTCAAGGAACGAGTTCAGGAGATTGCAGATAAAAAAGGA 1196
Query 1735 ATCAAACTAAGATTCTGCAATCTCAAGGAGTGCGAGAATAACCACAATGTAATGAACAGC 1794
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATCAAACTGAGATTCTGCAATCTCAAGGAGTGCGAGAATAACCACAATGTAATGAACAGC 1256
Query 1795 CCTTGTGCTAATATAAGAAGGGAGATCGGGTGGCCGCACGGAGTTCCATTTGTTCATCCT 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CCTTGTGCTAATATAAGAAGGGAGATCGGGTGGCCGCACGGAGTTCCATTTGTTCATCCT 1316
Query 1855 CACGACCTACCCAATAAAGCGAAAATCGGTTTCCTTGAGACATATGAGCCTGGATGGTCT 1914
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1317 CATGACCTACCCAATAAAGCTAAAATCGGTTTCCTTGAGACATATGAGCCAGGATGGTCT 1376
Query 1915 GAAACACATGACATGGAGTTCAGTCTGTCTGAAACCGCTCAGGGAAACCAACATGTGACT 1974
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAAACACATGACATGGAGCTCAGTCTGTCTGAAACCGCTCAGGGAAACCAACATGTGACT 1436
Query 1975 AACTG 1979
|||||
Sbjct 1437 AACTG 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83379546305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5