BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12950.1
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478657 jgi|Araly1|478657|fgenesh2_kg.3__1358__AT3G12950.1 2854 0.0
> Ahg478657 jgi|Araly1|478657|fgenesh2_kg.3__1358__AT3G12950.1
Length=1941
Score = 2854 bits (1545), Expect = 0.0
Identities = 1701/1778 (96%), Gaps = 3/1778 (0%)
Strand=Plus/Plus
Query 137 TCGTGAGAATTCAAGGAACATCTTTTCTTCGATGTGATTACCCAATAAGCTGAAA-ACAA 195
||||||||||||||||||||| |||||| |||| |||||||||| ||| | |||| | ||
Sbjct 1 TCGTGAGAATTCAAGGAACATTTTTTCTCCGATTTGATTACCCATTAACCAGAAACAAAA 60
Query 196 AAGGCGTGATTTTGTGATTACTCTGGCGTAATAATGCCTCAGTATGGGTCAACGGGTCAA 255
||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 61 AAGGCTTGATTTTGTGATTACTCTGGCTTAACAATGCATCAGTATGGGTCAACGGGTCAA 120
Query 256 CACTGCGAGTTCACGGCGGCGTCTTACTTCTCGTGGCCGACTTCAAGCAGGCTAAGCAAC 315
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CACTGCGAGTTCACGGCGGCGTCTTACTTCTCGTGGCCGACTTCAAGCAGGCTTAGCAAC 180
Query 316 GCCGCGGAGGAAAGAGCTAACTATTTCTCAAACTTGCAGAAAGAGGAGGATGATGATGAT 375
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 181 GCGGCGGAGGAAAGAGCTAACTATTTCTCAAACTTGCAGAAAGAGGAGGAGGAGGATGAG 240
Query 376 GAGGTTTCTCCTGAACCAGTC-TCCACAGAGCCTAAAGGGCAACGAGCCACTACTTTACT 434
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GAGGTTTCTCCTGAACCAG-CATCCACAGAGCCTAAAGGGCAACGAGCCACTACTTTGCT 299
Query 435 TGAGCTCATGACCATAAGAGCCTTCCACAGCAAGATGTTGCGGTGTTATAGTCTTGGAAC 494
|||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 300 TGAGCTCATGACTATAAGAGCTTTCCACAGCAAGATCTTGCGTTGTTATAGTCTTGGAAC 359
Query 495 AGCTATAGGGTTCAGGATTCGGAGAGGGGTTCTTACTGATATCCCAGCGATTATTGTGTT 554
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 AGCTATAGGGTTCAGGATCCGGAGAGGGGTTCTTACTGATATCCCGGCGATTATTGTGTT 419
Query 555 TGTGTCTCGGAAAGTGCATAAGCAATGGCTAAGTCCTCTTCAGTGTCTTCCTACTGCTCT 614
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 TGTGTCTCGGAAAGTGCATAAGCAATGGCTAAGCCCTCTTCAGTGTCTTCCTACTGCTCT 479
Query 615 TGAGGGAGCAGGAGGGATTTGGTGTGATGTGGATGTGGTGGAGTTTTCGTATTTTGGAGA 674
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TGAGGGAGCAGGAGGGATTTGGTGTGATGTGGATGTGGTGGAGTTTTCTTATTTTGGAGA 539
Query 675 ACCTGATCATCAGCCCACACCTAAACAAACATTCACTACTGATATTGTTGATCATCTCCA 734
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 540 ACCTGATCATCAGCCCACTCCTAAACAAACATTCACTACTGACATTGTTGATCACCTCCA 599
Query 735 AGGGTCAGATCCTTTCATTGGATCAGGCTCTCAGGTGGCAAGCCAAGAGACTTGTGGGAC 794
||| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGGTTCTGACCCCTTCATTGGATCAGGCTCTCAGGTGGCAAGCCAAGAGACTTGTGGGAC 659
Query 795 TTTGGGGGCAATAGTTAGGAGTCAGACTGGAGGTAGACAAGTTGGGTTTGTGACTAACCG 854
||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 660 TTTGGGGGCAATAGTGAGGAGTCAGACTGGAAGTAGACAAGTTGGTTTTGTGACTAACCG 719
Query 855 CCATGTTGCTGTTAACTTAGATTACCCTAGCCAGAAGATGTTTCATCCTCTCCCTCCTGC 914
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 CCATGTTGCTGTCAACTTAGATTACCCGAGCCAGAAGATGTTTCATCCTCTCCCTCCTGC 779
Query 915 CCTTGGTCCTGGTGTCTACCTTGGAGCAGTTGAGAGAGCCACTTCCTTCATCACAGACGA 974
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCTCGGTCCCGGTGTCTATCTTGGAGCAGTTGAGAGAGCCACTTCCTTCATCACAGACGA 839
Query 975 TCTCTGGTTTGGCATTTTTGCTGGCACCAATCCAGAGACGTTTGTGAGAGCAGACGGTGC 1034
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 840 TCTCTGGTTTGGCATTTTTGCTGGCACCAATCCAGAGACATTTGTGAGAGCAGATGGTGC 899
Query 1035 ATTCATCCCCTTTGCAGACGACTATGACCTGTCACGAGTCACAACGTCTGTCAAAGGTGG 1094
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 900 ATTCATCCCCTTTGCAGACGACTATGACTTGTCACGAGTTACAACGTCTGTCAAAGGTGG 959
Query 1095 AGTAGGAGAGATTGGAGAGGTCAAAGCCATAGAGCTGCAGTCTCCAGTTGGTAGTTTAGT 1154
||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 960 AGTTGGAGAGATTGGTGAGGTCAAAGCCATAGAGTTGCAGTCTCCAGTTGGCAGTTTAGT 1019
Query 1155 GGGTAAACAGGTGGTGAAAGTCGGGAGAAGCTCTGGCTTGACTACAGGAACTGTGCTGGC 1214
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 GGGTAAACAGGTGGTGAAAGTCGGGAGAAGCTCTGGTTTGACTACAGGAACTGTGCTGGC 1079
Query 1215 TTATGCACTGGAGTACAATGACGAGAGAGGAGTCTGCTTCCTCACTGATTTTCTTGTTGT 1274
||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1080 TTACGCCCTGGAGTACAATGACGAGAAAGGAGTCTGCTTCCTTACTGATTTTCTTGTTGT 1139
Query 1275 CGGGGAGAACCATCGCAGTCCGTTTGATCTTGAGGGAGACAGCGGAAGCCTCATAGTGAT 1334
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGGGGAGAACCATCGCAGTCCATTTGATCTTGAGGGAGACAGCGGAAGCCTCATAGTGAT 1199
Query 1335 GAAAGGAGAGGAGAAGGCAAGACCCATTGGGATCATATGGGGAGGCACTGGAAGCCGCGG 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAAAGGAGAGGAGAAGGCAAGACCCATTGGGATCATATGGGGAGGCACTGGAAGCCGCGG 1259
Query 1395 GAGGCTGAAACTGAAGGTAGGGGAGTGTCCAGAGAGCTGGACCACTGGTGTAGATCTGGG 1454
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAGGCTGAAACTGAAGGTGGGGGAGTGTCCAGAGAGCTGGACCACTGGTGTAGATCTGGG 1319
Query 1455 AAGGCTTCTTACACATCTCCAGCTTGATCTCATCACCACCGATGAAGGGTTAAAAGCGGC 1514
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CAGGCTTCTTACACATCTTCAGCTTGATCTCATCACCACCGATGAAGGGTTAAAAGCGGC 1379
Query 1515 AGTGCAAGAACAAAGAGCGGCCTCAACAACGGGGATGAGCTCAATGGTTGCAGACTCATC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGTGCAAGAACAAAGAGCGGCCTCAACAACGGGGATGAGCTCAATGGTTGCAGACTCATC 1439
Query 1575 ACCTCCGTATGTGAATCTCAAGAAAGAGAAGAGAAGCCCAGAAGAAAAGTTAGAGGCATC 1634
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1440 ACCTCCGTATGTGAATCTCAAGAAAGGGAAGAGAAGCCCAGAAGAAAAGGTAGAGGCATC 1499
Query 1635 ATTAGGACCTCTTCAGGTCCAACATATTGATCTTGAAGAGAGAATAGAAACAAAAGGAGG 1694
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1500 ATTAGGACCTCTTCAGGTCCAACACATTGATCTTGAAGAGAGAATAGAAACAGAAGGAGG 1559
Query 1695 TGCTCCAAGTGTCGAACACCAGTTCATGCCCACCTTCAGCGGTCAATGTTCCGCTTCTGC 1754
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1560 TGCTCCAAGTGTGGAACACCAGTTCATGCCAACCTTCAGCGGTCAATGTTCCGCAGCTGC 1619
Query 1755 TTGGCCTGAGACTGCTAGAGAGGATCTTGTTGCCGGCTTTACAAATGGTAGCTGCGATGG 1814
||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||||
Sbjct 1620 TTGGCCTGAGACTGCTAGAGAGGATCTTGCTGTCGGCCTTACAAATGGTAGCTGCAATGG 1679
Query 1815 GGATTTATGTGTTGGACTACGTTTAGGAGACGATGGAGCTAAACGCAGACGCACTCAGGT 1874
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1680 GGATTTATGTGTTGGACTGCGTTTAGGGGACGATGGAGCTAAACGCAGACGCACTCAAGT 1739
Query 1875 GACCAACGAAAGAATGAGACCCGCCGAATAGATAAAAA 1912
|||||| |||||||||||||||||||||||||||||||
Sbjct 1740 GACCAAGGAAAGAATGAGACCCGCCGAATAGATAAAAA 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81855936505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5