BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12960.1
Length=341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478659 jgi|Araly1|478659|fgenesh2_kg.3__1360__AT3G12960.1 329 6e-90
> Ahg478659 jgi|Araly1|478659|fgenesh2_kg.3__1360__AT3G12960.1
Length=241
Score = 329 bits (178), Expect = 6e-90
Identities = 221/242 (91%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 1 CCTGTCTCTCCTTATATACGACGTCTAATGTCAACTCGTGAT-CTCTTAAACCCTTAAAA 59
|||| ||| |||||||||||| |||| ||||| |||||||| | || ||||||| ||||
Sbjct 1 CCTGCCTCACCTTATATACGATGTCTCATGTCCCCTCGTGATGC-CTGAAACCCTAAAAA 59
Query 60 TGGCGAAGAACAAGGACGACATAAAGTATGCAACGGCTCAAGCGAAGCTATCGGAAGACG 119
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 60 TGGCAAAGAACAAGGACGACATAAAGTACGCAACGGCTCAAGCGAAGCTATCGGAAGACG 119
Query 120 AAGCAATTCGTGTAAGCTACAAACACGGGACACCATTAGAGGGAGGCAAGATCGCAGAGT 179
|| | || |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 AACCTATCCGTGTAAGTTACAAACACGGGACACCATTAGAAGGAGGCAAGATCGCAGAGT 179
Query 180 CGGAGCCTGTAGAGCTGTTCTCGAGTGCTCAACGTATCGAGAAGGGAAAAGAGCAGTCAG 239
||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct 180 CGGAGCCTGTAGAGCTGTTCTCGAGCGCTCAACGTATCGAGAAGGGGAAAGATCATTCAG 239
Query 240 CA 241
||
Sbjct 240 CA 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12095321713
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5