BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12970.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929020 jgi|Araly1|929020|scaffold_301477.1 1814 0.0
Ahg477076 jgi|Araly1|477076|fgenesh2_kg.2__2206__AT1G79060.1 60.2 4e-08
> Ahg929020 jgi|Araly1|929020|scaffold_301477.1
Length=1199
Score = 1814 bits (982), Expect = 0.0
Identities = 1131/1201 (94%), Gaps = 17/1201 (1%)
Strand=Plus/Plus
Query 56 tctctcGATATCGACGG-AAATGGCGTCGGGTTGCGTTAAAAATGTTGGTACCTCGCCGA 114
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 TCTCTCGATATCGACGGTAAATGGCGTCGGGTTGCGTTAAAAATGTTGGTACTTCACCGA 60
Query 115 GTCACTCATGGACGAGCTCCAAAATGTCATTGACCCGTGAATCTCAACCGTTGGCCCCAG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTCACTCATGGACGAGCTCCAAAATGTCATTGACCCGTGAATCTCAACCGTTGGCTCCA- 119
Query 175 C-GTTAGAAAACGAAGATCCTGTTGACGACTTTGAGTTTCTACTCGAAGATCCCGTCACA 233
| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 120 CAGTTGGAAAACGAAGATCCTGTTGACAACTTTGAGTTTCTTCTCGAAGATCCCGTCACA 179
Query 234 ATGCTATCCGCCGACGAGCTTTTCTCCGACGGAAAGCTTGTCCCGCTTAAGTTTTCTGGC 293
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 180 ATGCTATCCGCCGACGAGCTTTTCTCCGACGGAAAGCTAGTCCCGCTTAAGTTTTCCGCC 239
Query 294 GTAACTTATCCGGAAGAGAAGCCTATAACGTCGGTGGTTCATACGGCGGTGAAACCATGC 353
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 GTGACTAATCCGGAAGAGAAGCCTATGACGTCGGTGGTTCATACGGCGGTGAAACCATGC 299
Query 354 CGAAGATTGGAAATGGAGATCTCCGGCGTCGTCGATCCTTATCTCTTCTCTCCGAGAGCT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGAAGATTGGAAATGGAGATCTCCGGCGTCGTCGATCCTTATCTCTTCTCTCCGAGAGCT 359
Query 414 CCTCGTTGCACCGTGAGATGGCGTGAGCTTTTAGGTCTTAAGAGACTCGCCAAAACGCAA 473
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 360 CCTCGTTGCACCGTGAGATGGCGTGAGCTTTTAGGTCTAAAGAGACTCGCCAAAACACAA 419
Query 474 CAAGAAGCGTCAGCGTCGTCCTCGTCGCGTTTGTCTTCTTCTTCTCCAAACCCCAAAACG 533
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGAAGCGTCAGCGTCGTCCTCATCGCGTTTGTCTTCTTCTTCTCCAAACCCCAAAACG 479
Query 534 GCATCGTTTAGACATTTTCTCAACCGGAGTTCTAAATCTACCGCTCAACAACCGTCTCAT 593
||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 480 GCATCGTTTAGGCATTTTCTCAACCGGAGTTCTAAATCCACCGCTCAACCACCGTCTCAC 539
Query 594 CCGCCGCCGGGAAAAGACTCAGATATCTTGGAGTCATCGTCAACGTCTATCTCCTCTTCA 653
||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct 540 CCGCCGCCGGGAAAAGACTCAGACATCTTGGAATCGTCGTCAACGTCGATCTCCTCTTCA 599
Query 654 CGTCTCTCTCTTTCGTCGTCTTCTTCCTCCGGTCACGAGCTAGACGACCTTCCAAGACTA 713
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 CGTCTCTCTCTCTCGTCGTCTTCTTCCTCCGGTCGCGAGCTAGACGACCTTCCAAGACTA 659
Query 714 TCTTTAGATCTCGACAACAAACCCGGAACACCAAACCCGTTCGCTCGGTCACGTGCCCAC 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 TCTTTAGATCTCGACAACAAACCCGGAACACCAAACCCGTTCGCTCGGTCACGTGCTCAC 719
Query 774 CACCACCACCA-CTTGCGTAACCAAAACCAACCAAGAAAGCCACGACGTCACACACAGGT 832
||||||||||| || ||||||||| ||||||| |||||||||||||||| || ||| ||
Sbjct 720 CACCACCACCATCT-GCGTAACCAGAACCAACAAAGAAAGCCACGACGTAACGCACCGGC 778
Query 833 TGATGAATCAACAGAGAGTAGTATTGAGTCGAGAGTAATGACGGTGACGGCGGATAGTCC 892
|||||||| |||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 779 TGATGAATTGACAGAGAGTAGTATTGAGACAAGGGCAATGACGGTGACGGCGGATAGTCC 838
Query 893 GAGACTCAATGCTTCGGGGAAGATCGTGTTTCATGGACTCGAGAGAAGCTCAAGCAGTCC 952
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 TAGACTCAATGCTTCGGGGAAGATCGTGTTTCATGGACTGGAGAGAAGCTCAAGCAGTCC 898
Query 953 CGGTAACTTCACTGGAGGACCAAGAATGAAGCTTCACCATGGAATGCCGAGATCTCACTC 1012
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGGTAACTTCACCGGAGGACCAAGAATGAAGCTTCACCATGGAATGCCGAGATCTCACTC 958
Query 1013 AGCTAATGTCAGAATCACTCCTGTTCTCAATGTTCCTGTCTCTTCTCTCCGTAGCGGGCC 1072
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 959 CGCTAATGTCAGAATCACTCCTGTTCTCAATGTCCCTGTCTCTTCTCTCCGTAGCGGACC 1018
Query 1073 CAAATCAGGCCTCTTTTTTGGCCAGCTTTTCGCTTCTTC-T-T-CTTCAGCTTCATCGTC 1129
||||||||| ||||| || |||||||||||||||||||| | | |||| |||| |||||
Sbjct 1019 CAAATCAGGTCTCTTCTTCGGCCAGCTTTTCGCTTCTTCGTCTTCTTCTTCTTCGTCGTC 1078
Query 1130 -T--T---C---GTCGTCTGGAAACAGAGCACAGTTGCAGAGCAATAACATCAAGAACCG 1180
| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTCATTGGCTTCGTCGTCTGGAAACAGAGCACAGTTGCAGAGCAATAACATCAAGAACCG 1138
Query 1181 TACCAATCGAAGCAGACTTGAACCGACAAGCGAACTCTAAGTACCGAACCGGATTCTAAT 1240
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1139 TACCAATCGAAGCAGACTTGAACCGACAAGCGAACTCTAAGAACCGAACCGGATACTAAT 1198
Query 1241 T 1241
|
Sbjct 1199 T 1199
> Ahg477076 jgi|Araly1|477076|fgenesh2_kg.2__2206__AT1G79060.1
Length=1736
Score = 60.2 bits (32), Expect = 4e-08
Identities = 45/51 (88%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 222 GATCCCGTCACAATGCTATCC-GCCGACGAGCTTTTCTCCGACGGAAAGCT 271
||||| ||| |||||| || |||||||||||||||||||||||||||||
Sbjct 289 GATCCAGTCGGAATGCT-CCCAGCCGACGAGCTTTTCTCCGACGGAAAGCT 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5