BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12977.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929021 jgi|Araly1|929021|scaffold_301478.1 1238 0.0
> Ahg929021 jgi|Araly1|929021|scaffold_301478.1
Length=883
Score = 1238 bits (670), Expect = 0.0
Identities = 797/859 (93%), Gaps = 5/859 (1%)
Strand=Plus/Plus
Query 87 ATCTTCAGATATTAATAGAAATGGAGGAGACAGAAAAGAATAAGGGCAGCATAAGTATGG 146
|||||||||||||||||||||||||||| | |||| |||| |||||||| ||||||||||
Sbjct 1 ATCTTCAGATATTAATAGAAATGGAGGAAAAAGAAGAGAAGAAGGGCAGTATAAGTATGG 60
Query 147 TTGAGGCTAATCTACCTCCTGGTTTTAGATTCCATCCTAGAGACGACGAGCTCGTCTGTG 206
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 61 TTGAGGCTAACCTACCTCCTGGTTTTAGGTTCCATCCTAGAGACGACGAGCTCGTCTGCG 120
Query 207 ACTACTTAATGAGAAGAACCGTTCGCAGCCTCTATCAACCAGTTGTCTTGATCGACGTCG 266
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 ACTACTTGATGAGAAGAACCGTTCGCAGCCTCTATCAACCTGTTGTCTTGATCGACGTCG 180
Query 267 ATCTTAACAAATGCGAGCCTTGGGACATTCCTCAAACGGCGAGAGTGGGAGGGAAAGAAT 326
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 ATCTCAACAAGTGCGAGCCTTGGGACATTCCTCAAATGGCGAGAGTGGGAGGGAAAGAAT 240
Query 327 GGTACTTTTACAGCCAAAAAGACCGTAAATACGCAACAGGCTACAGAACAAACCGGGCTA 386
|||| ||||||||||||||||| | |||||| |||||||| ||||||||||||||||||
Sbjct 241 GGTATTTTTACAGCCAAAAAGATAGGAAATACACAACAGGCCACAGAACAAACCGGGCTA 300
Query 387 CGGCCACCGGTTATTGGAAAGCCACCGGGAAAGATAGAGCAATCCAAAGAAACGGTGGTC 446
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 301 CGGCCACCGGTTATTGGAAAGCCACCGGAAAAGATAGAGCAATCCAAAGAAATGGTAGTC 360
Query 447 TTGTGGGTATGAGAAAGACACTTGTGTTTTACCGAGGTCGATCCCCTAAAGGTCGTAAAA 506
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TTGTGGGTATGAGAAAGACACTTGTGTTTTACCGAGGTCGAGCCCCTAAAGGTCGTAAAA 420
Query 507 CTGATTGGGTCATGCATGAGTTTCGTCTCCAAGGAAA-ACTTCTTCACCACTCCCCTAAT 565
| |||||||||||||||||||||||||||||| |||| ||| ||||||||| | |||||
Sbjct 421 CCGATTGGGTCATGCATGAGTTTCGTCTCCAA-GAAACACTACTTCACCACACTTCTAAT 479
Query 566 TCTCTCGAGGAAGAGTGGGTATTGTGTAGAGTTTTCCACAAGAACAGCAACGGAGCTGAT 625
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTCTCAAGGAAGAGTGGGTATTATGTAGAGTTTTCCACAAGAACAGCAACGGAGCTGAT 539
Query 626 ATAGACGACATCACAAGGAGCTGCTCTGATGCAACAGCTTCTGCATTCATGGACTCTTAC 685
| || ||||| ||||| ||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 540 AGAGTCGACAACACAAAAAGCTGCTCTAATGAAACAGCTCCTGCATTCATGGACTCTTAC 599
Query 686 ATCAACTTCGACCATCATCACATCATCAATCAGCATGTACCCTGCTTCTCCAATAATTTG 745
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTAACTTCG---ATCATCACATCATCAATCAGCATGTACCCTGCTTCTCCAATAATTTG 656
Query 746 TCACATAACCAAACCAACCAATCCGGTTTAATCTCCAAGAACTCCAGCCCATTGTTTAAT 805
||| | |||||||| ||| ||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 657 TCAGAGAACCAAACTAACGAATCCGGTTTAGTCTCCAAAAACTCCAGCCCGTTGTTTAAT 716
Query 806 GCTTCCCCTGATCAAATGATTCTCAGAACTTTGCTAAGTCAACTCACaaaaaaaGTCGAA 865
||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 717 GCTTCCCCTGATCAAATGATTATCCGAACTTTGCTAAGTCAACTCACAAAAAATGTCGAA 776
Query 866 GAATCACAGAGTCGTGGAGACGGAAGCTCAGAGAGCCAATTGACCGACATTGGCATCCCA 925
||||| ||||| |||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 777 AAATCAGAGAGTTATGGAGAAGGAAGCTCAGAGAGCCAATTGACCAACATTGGCATCCCA 836
Query 926 AGCCATGCATGGAATTACT 944
|||| | ||||||||||||
Sbjct 837 AGCCCTACATGGAATTACT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5