BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12981.1
Length=575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478663 jgi|Araly1|478663|fgenesh2_kg.3__1364__AT3G12981.1 647 0.0
Ahg933470 jgi|Araly1|933470|scaffold_401458.1 147 1e-34
> Ahg478663 jgi|Araly1|478663|fgenesh2_kg.3__1364__AT3G12981.1
Length=514
Score = 647 bits (350), Expect = 0.0
Identities = 465/520 (89%), Gaps = 9/520 (2%)
Strand=Plus/Plus
Query 22 CTTGACTATTCTGGTTATCCCGCAGAAGATTATGAGGTTGATTTGGGTTCCCTTGTAGAA 81
|||||||||||| ||||| |||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 1 CTTGACTATTCTAGTTATGCCGCTGAAGATTATCAGGTTAATTTGGGTTCCCTTGTAGAA 60
Query 82 GATATTGTTGGTTATGTTACGAATCTGGTTGCAGGGATAAGCAATGTTAAAACCCTTCAC 141
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATATTGTTGGTGATGTTACTAATCTGGTTGCAGGGATAAGCAATGTTAAAACCCTTCAC 120
Query 142 TTGTCCGCTGTTTCTCTTGAGGTATTTTACTCGTGCTGTAAATCAATCCCGGTGTTTCCC 201
|| || ||| |||||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 121 TTATCTTCTGATTCTCTTGAGGTATTTCACTCGTGCTGTAAATCAATGCCGGTGTTTCAC 180
Query 202 AACCTCGTTACTTTATCTTTTGAGTGTAACAAAGAAAGAGGCTGGTAAGTGGAGCCACTT 261
|||||||||||||||||||||||| || ||||||||||||||||| ||| || ||||||
Sbjct 181 AACCTCGTTACTTTATCTTTTGAGAGTGACAAAGAAAGAGGCTGGCAAGCGGTTCCACTT 240
Query 262 CTCCTTAACTACTCTCCAAATCTAGAAACTTAAGTCATCAAGGGTCTTGTGCATGAAGTT 321
||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 241 CTCCTCAACAACTCTCCAAATCTAGAAACTTTAGTCATCAAGGGTCTTGTGCACGAAGTT 300
Query 322 ACAGACAAACGTGGTGACGCCTGCGTTTGCACCCCTAAGAGGGATAAGAGGAAGAGCTGA 381
||||| ||| | || || || |||| ||||| |||||||| |||||||||||||||||||
Sbjct 301 ACAGAAAAATGCGGAGATGCATGCGCTTGCATCCCTAAGAAGGATAAGAGGAAGAGCTGA 360
Query 382 AAC-GAATGAGGCATTTCTTGGCAAATTTAAAACGTCTTGAAACTGTCAATGTTAATGTC 440
||| || ||||||||||||||| ||||||||| |||||||||||||||| ||| |||
Sbjct 361 AACAGA-TGAGGCATTTCTTGGGGAATTTAAAATGTCTTGAAACTGTCAAGGTTGGTGTT 419
Query 441 GAATT-GAGTGAAGGCAAGGATGTTAAGAAAAGGTTCCTGACGA-TCACCAATGCTCTTA 498
||| | || | |||||||||||||||| || ||| | ||| || |||||||||||||||
Sbjct 420 GAAGTCGA-TCAAGGCAAGGATGTTAA-AA--GGTACATGA-GAATCACCAATGCTCTTA 474
Query 499 TGAAGCTTCCCAGAGTTTCATCAAACTGTCTGATCCATTT 538
|||||||||| ||||||||||||||||||| |||||||||
Sbjct 475 TGAAGCTTCCTAGAGTTTCATCAAACTGTCAGATCCATTT 514
> Ahg933470 jgi|Araly1|933470|scaffold_401458.1
Length=317
Score = 147 bits (79), Expect = 1e-34
Identities = 146/176 (83%), Gaps = 14/176 (8%)
Strand=Plus/Plus
Query 374 AGAGCTGAAACGA-ATGAGGCATTTCTTGGCAAATTTAAAACGTCTTGAAACTGTCAATG 432
||||||||||| | |||||||||||||||| | |||| ||| ||||||||||||||||||
Sbjct 120 AGAGCTGAAAC-AGATGAGGCATTTCTTGGGACATTTGAAATGTCTTGAAACTGTCAATG 178
Query 433 TTAATGTCGAA-T---TGA--GTGAAGGCAAGGATGTTAAGAA-AAGGTTCCTGACG-AT 484
| ||| ||| | | | | |||| ||| |||||||| || || || ||||| | ||
Sbjct 179 TGGGTGTTGAAGTGAATCACCGAGAAGACAACGATGTTAACAACAA-GTACCTGA-GAAT 236
Query 485 CACCAATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGTCTGA-TCCATTTC 539
|||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 237 CACCGATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGTA-GAATCCATTTC 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21023729539
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5