BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12990.1
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486522 jgi|Araly1|486522|fgenesh2_kg.5__2514__AT3G60500.2 1203 0.0
Ahg341414 jgi|Araly1|341414|fgenesh1_pg.C_scaffold_3001177 769 0.0
> Ahg486522 jgi|Araly1|486522|fgenesh2_kg.5__2514__AT3G60500.2
Length=1640
Score = 1203 bits (651), Expect = 0.0
Identities = 852/949 (90%), Gaps = 13/949 (1%)
Strand=Plus/Plus
Query 131 TAGCTCACTAGCA-AACAATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAAT 189
||| ||| ||||| || |||||||||||| ||| ||||||||||||||||||||||||
Sbjct 192 TAG-TCA-TAGCAGAATAATGGAGGGGAGATTGGCTAATATGTGGAGGTTGACTGTGAAC 249
Query 190 GAGAGCAAATTCGTTGAATCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTT 249
||||| |||||||| ||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 250 GAGAGTAAATTCGTGGAAACTGCGTTGCAATCTGAACTCAGAGTTGATGGTCGTGGCCTT 309
Query 250 TATGATTACCGCAAGCTTACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAA 309
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 310 TATGATTACCGCAAGCTTACTATTAAGTTTGGCAAAGAATATGGTAGCTCGGAAGTTCAA 369
Query 310 CTGGGTCAGACTCATGTAATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGAC 369
|| ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct 370 CTTGGTCAGACTCATGTAATGGGTTTTGTGACTGCTCAGATGGTACAACCTTACAAAGAC 429
Query 370 AGACCTAGTGAAGGCTCCT-TCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATC 428
||||||| |||||| | || | ||||||||||| || |||||||||||||||||||| ||
Sbjct 430 AGACCTAATGAAGG-TTCTCTATCTATCTTCACGGAATTTTCTCCAATGGCTGATCCGTC 488
Query 429 GTTTGAGCCAGGGCATCCTGGTGAATCTGCTGTTGAGCTT-GGCCGTATTATAGACCGTG 487
|||||||| || | |||||| ||||||||||| ||| || || || ||||| |||||||
Sbjct 489 TTTTGAGCCTGGTCGTCCTGGCGAATCTGCTGTGGAG-TTGGGACGCATTATCGACCGTG 547
Query 488 CTCTACGAGAAAGCCGTGCAGTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGG 547
|||| ||||||||||||| |||||||||||||| || || |||||||| |||||| |||
Sbjct 548 GTCTAAGAGAAAGCCGTGCGGTAGATACAGAGTCACTCTGCGTTCTAGCTGGAAAGATGG 607
Query 548 TTTGGTCTGTTCGCATTGATCTTCACATTTTGGACAATGGAGGGAACTTGGTTGATGCTG 607
||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 608 TTTGGTCTGTTCGTATTGATCTTCATGTCTTGGACAACGGAGGGAACTTGGTTGATGCTG 667
Query 608 CTAATGTTGCTGCCTTAGCCGCACTCATGAC-TTTCAGGAGACCTGATTGCACTGTAGGA 666
| ||| ||||||| ||||| || |||||||| ||| |||||||| || ||||||||||||
Sbjct 668 CAAATATTGCTGCTTTAGCAGCTCTCATGACGTTT-AGGAGACCCGACTGCACTGTAGGA 726
Query 667 GGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAAGGGAACCACTTCCTTTG 726
|| || ||| ||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct 727 GGAGAGAACGGTCAAGAAGTGATCATACATCCACCAGAGGAAAGGGAACCACTTCCATTG 786
Query 727 ATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAGTATCT-T 785
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 787 ATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTAATAAAGGCAACAT-TGT 845
Query 786 GGTGATGGACCCAACTTACGTTGAAGAAGCTGTTATGTGTGGGAGAATGACTGTGACAGT 845
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 846 GGTGATGGACCCAACTTATGTTGAAGAAGCAGTTATGTGTGGGAGAATGACTGTGACAGT 905
Query 846 CAATGCCAATGGCGATATATGCGCAATCCAAAAACCAGGAGAAGAAGGCGTGAACCAGAG 905
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 906 TAATGCCAATGGCGATATATGTGCAATCCAAAAACCGGGGGAAGAAGGCGTGAACCAGAG 965
Query 906 TGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTTCTGCAACAACAAAGATAAT 965
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||
Sbjct 966 TGTAATTCTTCATTGCCTGCGTCTTGCTTCTTCACGAGCTGCTGCAACAACAAAGATCAT 1025
Query 966 TAGAGATGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACAGAAGGTGAAGCGGCATCA 1025
|||||| | |||||||||||| ||||||||||| |||| ||||||||||||||| ||||
Sbjct 1026 TAGAGAAGAAGTTGAAGCATATAACCGTGAGAGAAGCTTACAGAAGGTGAAGCGACATCC 1085
Query 1026 TACTTTGGCTAAGTCTGAAGTTT-TGGGACCTATTGTAGTTGTGTAGGA 1073
||||||||||| |||||||||| ||| ||||| ||||| |||| ||||
Sbjct 1086 CACTTTGGCTAAATCTGAAGTTTCTGG-ACCTACTGTAGCTGTGAAGGA 1133
> Ahg341414 jgi|Araly1|341414|fgenesh1_pg.C_scaffold_3001177
Length=885
Score = 769 bits (416), Expect = 0.0
Identities = 462/484 (95%), Gaps = 4/484 (1%)
Strand=Plus/Plus
Query 590 GGAACTTGGTTGATGCTGCTAATGTTGCTGCCTTAGCCGCACTCATGACTTTCAGGAGAC 649
||||||||||||||||||| ||| ||||||| ||||| |||||| |||| ||||||||||
Sbjct 404 GGAACTTGGTTGATGCTGCAAATATTGCTGCTTTAGCGGCACTCTTGACATTCAGGAGAC 463
Query 650 CTGATTGCACTGTAGGAGGGGACAACAGTCAAGACGTGATCATACATCCACCCGAAGAAA 709
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 464 CTGATTGCACTGTAGGAGGGGAGAACAGTCAAGAAGTGATCATACATCCACCCGAAGAAA 523
Query 710 GGGAACCACTTCCTTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTA 769
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GGGAACCACTTCCGTTGATAATACATCATCTCCCAATAGCCTTCACGTTTGGATTTTTTA 583
Query 770 ATAAAGGCAGTATCTTGGTGATGGACCCAAC--TTACGTTGAAGAAGCTGTTATGTGTGG 827
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 584 ATAAAGGCAGTATCTTGGTGATGGACCCAACAGTT--GTTGAAGAAGCTGTTATGTCTGG 641
Query 828 GAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAAAAACCAGGAGA 887
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 642 GAGAATGACTGTGACAGTCAATGCCAATGGCGATATATGCGCAATCCAGAAACCAGGAGA 701
Query 888 AGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCTTCAAGAGCTTC 947
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 702 AGAAGGCGTGAACCAGAGTGTAATCCTTCATTGCCTGCGTCTTGCTTCCTCAAGAGCTGC 761
Query 948 TGCAACAACAAAGATAATTAGAGATGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACA 1007
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 762 TGCAACAACAAAGATAATTAGAGAAGCAGTTGAAGCATACAACCGTGAGAGGAGCTCACA 821
Query 1008 GAAGGTGAAGCGGCATCATACTTTGGCTAAGTCTGAAGTTTTGGGACCTATTGTAGTTGT 1067
|||||||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 822 GAAGGTGATGCGACATCATACTTTGGCTAAGTCTGAAGTTTTGGGACCTGTTGAAGTTGT 881
Query 1068 GTAG 1071
||||
Sbjct 882 GTAG 885
Score = 649 bits (351), Expect = 0.0
Identities = 387/405 (96%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 148 ATGGAGGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGCAAATTCGTTGAA 207
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGATGGGAGGTTGAATAATATGTGGAGGTTGACTGTGAATGAGAGTAAATTCGTGGAA 60
Query 208 TCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTT 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGCGTTGCAATCTGAGCTCAGAGTCGATGGTCGTGGCCTTTATGATTACCGCAAGCTT 120
Query 268 ACTATTAAGTTTGGCAAGGAATATGGCAGCTCACAAGTTCAACTGGGTCAGACTCATGTA 327
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 121 ACTATTAAGTTTGGCAAGGAATATGGTAGCTCAGAAGTTCAACTAGGTCAGACTCATGTA 180
Query 328 ATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAGTGAAGGCTCC 387
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ATGGCTTTTGTGACTGCTCAGCTAGTACAACCTTACAAAGACAGACCTAATGAAGGCTCC 240
Query 388 TTCTCTATCTTCACCGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCAGGGCATCCT 447
|||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 241 TTCTCTATCTTCACGGAGTTTTCTCCAATGGCTGATCCATCGTTTGAGCCTGTTCATCCT 300
Query 448 GGTGAATCTGCTGTTGAGCTTGGCCGTATTATAGACCGTGCTCTACGAGAAAGCCGTGCA 507
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GGTGAATCTGCTGTTGAGCTGGGCCGTATTATAGACCGTGCTCTAAGAGAAAGCCGTGCA 360
Query 508 GTAGATACAGAGTCGCTTTGTGTTCTAGCCGGAAAGCTGGTTTGG 552
||||||||||||||||| |||||| | || ||||||||||| |||
Sbjct 361 GTAGATACAGAGTCGCTCTGTGTTTTTGCTGGAAAGCTGGTCTGG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44527567056
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5