BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13000.2
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318072 jgi|Araly1|318072|fgenesh1_pm.C_scaffold_3001088 2870 0.0
> Ahg318072 jgi|Araly1|318072|fgenesh1_pm.C_scaffold_3001088
Length=1749
Score = 2870 bits (1554), Expect = 0.0
Identities = 1684/1749 (96%), Gaps = 0/1749 (0%)
Strand=Plus/Plus
Query 367 ATGTATGACTCTCAAGTTTTGAAATCTAAATACAACCCATTTCTCAGACGTTCGCATTCT 426
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTATGACTCTCAAGTTTTGAAATCTAAATACAATCCATTTCTCAGACGTTCGCATTCT 60
Query 427 GGAAAGAAATTTCAGGGCACAGTTACCATGTCAGAGGGCAGAGAAACTTGCGAAGAATCT 486
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 61 GGAAAGAAATTCCAGGGCACAGTAACCATGTCAGAGGGCATAGAAACTTGCGAAGAATCT 120
Query 487 ACGAGTGGTGAATCTTTTCCATATAGATTTCAACTTGAAGAGGATGTAAAAAGATTGCAA 546
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTAGTGGCGAATCTTTTCCATACAGATTTCAACTTGAAGAGGATGTAAAAAGATTGCAA 180
Query 547 CTGCAACTCCAACAAGAAATAGATTTGCATACATTTCTAGAGAGTGTCATGGAGAAAGAT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGCAACTCCAACAAGAAATAGATTTGCATACATTTCTAGAGAGTGTCATGGAGAAAGAT 240
Query 607 CCTTGGGAGCTATCTTATTCTTCTAGTGTTCCACATCCTGCTCAGGAACTTCTCTCCAAT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CCTTGGGAGCTATCTTATTCTTCTAGTGTTCCACATCCTGCTCAGGAACTTCTTTCCAAT 300
Query 667 ATAGTGACGCTAGAGACTGCAGTCACTAAGCTCGAGCAAGAAATGATGTCACTGAATTTC 726
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 ATAGTTACGCTAGAGACTGCAGTCACAAAGCTCGAGCAAGAAATGATGTCACTGAATTTC 360
Query 727 CAACTTAGCCAAGAGAGAAACGAGAGGAGACTCGCGGAATACCAGTTGACACATTCGGCT 786
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CAACTTAGCCAAGAGAGAAACGAGAGGAGACTCGCGGAATACCATTTGACACATTCGGCT 420
Query 787 TCTCCACTAAATTCTTCTTCTTCCCTAAGATATTTGAATCAGTCAGATTCTGAATTACAT 846
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TCTCCACTAAATTCTTCTTCTTCCCTGAGATATTTGAATCAGTCAGATTCTGAATTACAT 480
Query 847 CAATCAGCAGAAGACAGTCCATCTCAAGACCAAATAGTCCATTACCAAGAATCTTCATCT 906
|||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||||
Sbjct 481 CAATCAGCAGAAGACAGTCCATGTCAAGACCAAACAGCCCAAGACCAAGAATCTTCATCT 540
Query 907 GAATCATCTCCAGCAGAGTCAACTGTTGAGCAAACACTGGACCCAAGTAATGACTTTCTT 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAATCATCTCCAGCAGAGTCAACTGTTGAGCAAACACTGGACCCAAGTAATGACTTTCTT 600
Query 967 GAAAAGAGGCTAATGAGAAAGACAAATGCGAGGAAGCTACCTCGAGGAATGCCACCTAAG 1026
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 601 GAAAAGAGGCTAATGAGAAAGACAATTGCGAGGAAGCTACCTCGAGGAATGCCACCAAAG 660
Query 1027 TACCTGTGGGATCAACCTAATCTATTATCTGAAGAAATGGTGAGATGTATGAAGAATATC 1086
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 661 CACCTGTGGGATCACCCTAATCTATTGTCTGAAGAAATGGTAAGATGTATGAAGAATATC 720
Query 1087 TTCATGTCTCTTGCTGATCCAACAGCAACTTCAAAAGCTTCCTCAAACGAAAGCCACCTC 1146
||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 721 TTCATGTCTCTCGCTGATCCAACAGCAACTTCAAAAGCATCTTCAAACGAGAGCCACCTC 780
Query 1147 TCACCAGTATCACCTCGCGGGCATCTATCAAGCTCAGCATCCTGGTGGCCTTCAACAGAA 1206
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 781 TCACCAGTATCACCTCGCGGGCATCTATCTAGCTCAGCGTCCTGGTGGCCTTCAACAGAA 840
Query 1207 CGGTCAATGATCTCCTCATGGGTGCAAAGCCCACAAATAGATATCCAAAATAACGCCAAT 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGGTCAATGATCTCCTCATGGGTGCAAAGCCCACAAATAGATATCCAAAATAACGCCAAT 900
Query 1267 GTTTTGGCCACAGGAGATGTCTTTGATCCTTATAGAGTTCGTGGGAAGTTAAGCTGGGCG 1326
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTTTTGGCCACGGGAGATGTCTTTGATCCTTATAGAGTTCGTGGGAAGTTAAGCTGGGCG 960
Query 1327 GAGATTGGGAACTACAGTTTGGCATCCGAGGTTTCTTGGATGTCTGTAGGGAAGAAACAG 1386
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 GAGATTGGAAACTATAGTTTGGCATCCGAGGTTTCTTGGATGTCTGTTGGGAAGAAACAG 1020
Query 1387 CTGGAGTATGCTTCCGGGGCATTGAAGAAGTTCAGGACACTGGTTGAGCAATTGGCTAGA 1446
||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 CTGGAATATGCTTCCGGGGCGTTGAGGAAGTTCAGGACACTGGTTGAGCAATTGGCTAGA 1080
Query 1447 GTAAATCCTATTCATTTAAGCTGCAACGAGAAGCTTGCTTTCTGGATTAACCTTTATAAC 1506
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1081 GTAAATCCTATTCATTTGAGCTGCAACGAGAAGCTAGCTTTTTGGATTAACCTATATAAT 1140
Query 1507 GCGTTGATAATGCATGCTTATTTGGCTTATGGCGTCCCAAAAAGCGACCTGAAGCTTTTC 1566
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCGTTGATCATGCATGCTTATTTGGCTTATGGCGTCCCAAAAAGCGACCTGAAGCTTTTC 1200
Query 1567 TCGTTGATGCAAAAGGCAGCCTATACAGTTGGAGGGCACTCATATACTGCGGCGACAATG 1626
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCGTTGATGCAAAAGGCGGCATATACAGTTGGAGGGCACTCATATACTGCGGCGACAATG 1260
Query 1627 GAATATGTGATACTGAAGATGAAACCGCCTATGCACAGGCCACAAATTGCTTTGCTTCTT 1686
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1261 GAATATGTGATACTGAAGATGAAACCGCCTATGCACAGGCCACAAATTGCTCTGCTTCTC 1320
Query 1687 GCCATCCACAAGATGAAAGTATCAGAAGAACAGCGCAGGGCAAGCATTGATACACATGAA 1746
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCCATCCACAAGTTGAAAGTATCAGAAGAACAGCGCAGGGCAAGCATTGATACACATGAA 1380
Query 1747 CCTCTTCTCGGCTTTGCTCTAAGCTGTGGAATGTACTCTTCACCTGCGGTGAGGATCTAC 1806
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1381 CCTCTTCTTGGCTTTGCTCTAAGCTGTGGAATGTACTCATCCCCTGCGGTGAGGATCTAC 1440
Query 1807 TCTGCGAAAGGAGTGAAGGAAGAGATGCTAGAAGCACAAAGGGACTTCATACAAGCATCG 1866
| | |||||||||||| |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1441 ACAGTGAAAGGAGTGAAAGAAGAGCTGCTAGAAGCACAAAGAGACTTCATACAAGCATCG 1500
Query 1867 GTAGGGCTGAGCAGCAAAGGGAAGCTCTTACTACCCAAAATGCTCCATTGTTATGCCAAG 1926
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1501 GTAGGGCTGAGCAGCAAAGGGAAGCTCTTAGTACCCAAAATGCTCCATTGTTACGCTAAG 1560
Query 1927 AGTTTGGTGGAGGATTCGAACTTGGGGGTCTGGATATCAAGGTACCTTCCTCCACATCAA 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1561 AGTTTGGTGGAGGATTCGAACTTGGGGGTCTGGATATCAAGGTACCTTCCTCCGCATCAA 1620
Query 1987 GCTGCTTTTGTGGAGCAATGCATCTCTCAGAGAAGACAAAGCCTTCTCGCTTCACGGAAC 2046
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1621 GCGGCTTTTGTGGAGCAATGCATCTCTCAGAGAAGACAAAGCCTTCTCGCTTCAAGGAAC 1680
Query 2047 TGCGGAATACTCCCCTTCGATTCTCGTTTCAGATACCTGTTTCTCCCCGACGACAACACC 2106
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1681 TGTGGAATACTCCCTTTCGATTCTCGTTTCAGATACCTGTTTCTGCCCGACGACAACACC 1740
Query 2107 TCGTTGTAA 2115
|||||||||
Sbjct 1741 TCGTTGTAA 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88940722075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5