BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13040.1
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478672 jgi|Araly1|478672|fgenesh2_kg.3__1373__AT3G13040.1 2586 0.0
Ahg914735 jgi|Araly1|914735|Al_scaffold_0001_4989 313 4e-84
> Ahg478672 jgi|Araly1|478672|fgenesh2_kg.3__1373__AT3G13040.1
Length=1885
Score = 2586 bits (1400), Expect = 0.0
Identities = 1735/1895 (92%), Gaps = 30/1895 (2%)
Strand=Plus/Plus
Query 7 CGACGGCGATTTCGTAGCGAAATCTCCGTCTCCTTCCTTTAACCCCAtctcttcttcttc 66
|||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1 CGACGGCGATTTCGTAGCCAAATCTTCGTCTTCTTCCTTTAACCCCATCTCTTCTTCTTC 60
Query 67 -t--tcttTTGCTTTCTCATTCGAATTAACTTCATCTCTTTGATGGGATTCAGCTTGTTT 123
| ||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 61 TTCGTCTTTTGCTTTCTCATTCGGATTAACTTCATCTCTTTGATGGGATTTTGCGTGTTT 120
Query 124 TCTCAAATGTTAGTT-TTTTCTTCATTTGTTATGCAGCAAGTATTAAAAAGGTGAAGACT 182
||||| ||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 121 TCTCAGATGCTAGTTATTTTCTTCATTTGTTATGCAGCAAGTA-TAAAAAGTTGAAGACT 179
Query 183 TTATCATCCTCTCAGCGGCTTGGATGCTAACTGCAAACTAATGGGGGATCTTGTCAAGAG 242
|||||||||||||||||||||| | || |||| |||||| |||| ||||||| |||||||
Sbjct 180 TTATCATCCTCTCAGCGGCTTGAAGGCCAACTCCAAACTTATGGCGGATCTTATCAAGAG 239
Query 243 ACAGTTTTGATTGTTGATGTACATCAAAGCAATCATGAACAGACACAGGCTTCTCTCAGC 302
|||||||| |||||||||| |||||||||||||||||||||||| || ||| | ||| |
Sbjct 240 TCAGTTTTGTTTGTTGATGTTCATCAAAGCAATCATGAACAGACATAGCCTTGTGTCAAC 299
Query 303 GGCAACAGATGAATGCAATAAAAAACTTGGTCAAGCTTGCTCTTCTTCTTTATCTCCAGT 362
|||||||||||||||||| ||| | |||||||| ||||||| ||||| |||||||||
Sbjct 300 GGCAACAGATGAATGCAACAAAGGAGTTGGTCAAACTTGCTCGACTTCTCCATCTCCAGT 359
Query 363 CCATAACTTTCTGAATGTCCAGCCAGAACACCGGAAAACTCCTTTCATAAGGTCACAATC 422
|||||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 360 CCATAACTTTCTCAATGTCCAGCCAGAACACCGGAAATCTCCCTTCATAAGATCACAATC 419
Query 423 TCCAGATTCACCTGGTCAGCTATGGCCAAAGAATAGTTCTCAGAGCACCTTCTCTCGGTC 482
|||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 420 TCCAGATTCAACTGGTCAGCTATGGCCAAAGAATATTTCTCAGAGCACTTTCTCTCGCTC 479
Query 483 TTCCACCTTTTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAGAAACA 542
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TTCCACCTTCTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAAAAACA 539
Query 543 TCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGG 599
Query 603 TGTGGAGTCTGCAAGATCTCCATCTATTTTCACTGAGGATTTGGGCAATCAATGTGATGG 662
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 600 TGTGGAGTCTGCAAGATCTCCATCTATTTTCAGTGAAGATTTGGGCAATCAATGTGATGG 659
Query 663 AGGCAACTCCGGGTCGCTTCTCAAAGACTTCCTTAATCTTTCTGGAGATGCTTGTTCCGA 722
|| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 AGACAACTCCGGCTCGCTTCTCAAAGATTTCCTTAATCTTTCTGGAGATGCTTGTTCCGA 719
Query 723 TGGCGATTTTCATGATTTTGGCTGTTCGAATGACAGCTATTGCTTATCAGATCAAATGGA 782
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 TGGCGGTTTTCATGATTTTGGCTGTTCGAATGACAGCTTTTGCTTATCAGATCAAATGGA 779
Query 783 ATTACAGTTCCTGTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACTCCCAG 842
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 GTTGCAGTTCCTCTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACCCCCAG 839
Query 843 GCTTGATGAGATCTATGAAACGCCATTGG---CGTCAAATCCAGTGACGAGATTGAGTCC 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 840 GCTTGATGAGATCTATGAAACGCCATTGGCTTCGTCAAATCCAGTGACGAGATTGAGTCC 899
Query 900 AAGCCAAAGCTGTGTTCCTGGAGCAATGTCTGTAGACGTAGTTTCATCTCACCCTTCTCC 959
|||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct 900 AAGCCAAACCTGTGTTGCTGGAGCAATGTCTATAGACGTAGTTTCATCGCACCCTTCTCC 959
Query 960 GGGATCAGCAGCCAATCAAAAGTCGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTT 1019
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 GGGATCAGCAGCCAATCACAAGACGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTT 1019
Query 1020 TGTAAAGGCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTAAGAA 1079
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 TGTTAAGTCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTATGAA 1079
Query 1080 GCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAG 1139
Query 1140 ACTAGCCAAGTATATGCCagagaaaaaagaagagaaaaggactgataactcagaagaaaa 1199
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1140 ACTAGCCAAGTATATGCCAGAGAAAAAAGAAGAGAAAAAGAATGAAAACTCAGAAGAAAA 1199
Query 1200 gaaaCTGGCTTTGAGTAAGAGTGAAGCTGACGAGAAGAAGAAAGGGGCCATACAATTAAC 1259
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 GAAACTGGCTTTGAGTAACAGTGATGCTGACGAGAAGAAGAAAGGGGCCATACAATTAAC 1259
Query 1260 TGAAGCACTGCGTATGCAGATGGAAGTTCAGAAGCAATTGCATGAACAGCTGGAGGTGCA 1319
|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1260 TGAAGCTCTGCGTATGCAGATGGAAGTTCAGAAGCAACTGCATGAACAGCTCGAGGTGCA 1319
Query 1320 ACGGGTGCTTCAGCTACGAATTGAAGAGCATGCTAAATACTTGGAAAAGATGTTGGAAGA 1379
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 ACGGGTACTTCAGCTACGAATTGAAGAGCACGCTAAATACTTGGAAAAGATGTTGGAAGA 1379
Query 1380 ACAACGCAAAACAGGAAGGTGGATTT---CTTCTTCTTCGCAGACAGTGTTATCACCTAG 1436
|||||||||||| |||| || ||||| |||||||||| |||||||| |||||||||||
Sbjct 1380 ACAACGCAAAACCGGAAAGTTGATTTGTTCTTCTTCTTCTCAGACAGTATTATCACCTAG 1439
Query 1437 TGATGACTCTATACCAGATTCTCAAAACATGTCCAAAACCAAAGCATCTTCGCCTCAGCC 1496
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1440 TGATGACTCTATATCAGATTCTCAAAACATGTCCAAAACCGAAGCATCTTCGCCTCAGCG 1499
Query 1497 GCCATTACCTGCAGAGAACAAAGCGTCGGAAACCGAAGACGATAAATGTGAAAGCCCTCA 1556
| || | ||||| |||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1500 GTCAACATCTGCAAAGAACAAAGCTTCTGAAACTGAAGACGATAAATGTGAAAGCCCTCA 1559
Query 1557 GAAACGTCGCAGGCTTGAGAACATAGCTGAATCTGAAGATCCTAAGAGGTAGTAAGATTC 1616
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 1560 AAAACGTCGCAGGCTTGAGAACAAAGCTGAATCTGAAGATCCTAAGAGGTAGGAAGATGC 1619
Query 1617 TTCAAGTATGTAAATATGGTCCGTTTTGTGTAATTTAGTGAGAGAGA-GA-G-TG-TCAC 1672
|||||||||||||||||||| ||||||||| || | |||||||||| | | || |||
Sbjct 1620 TTCAAGTATGTAAATATGGTATGTTTTGTGTGATATGGTGAGAGAGATGGTGGTGATCAT 1679
Query 1673 TCAAAATATATGTTTGTAATGTAGATCTTTGTCAGAAACGTGTAAACTTATTACGGATAT 1732
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| || |
Sbjct 1680 TCAAAGTATATGTTTGTAATGTAGATCTTTGTCGGAAACGTGTAAACGTATTACGAATCT 1739
Query 1733 TGAGGATGT-CACTGCCTTCA-C-TGTGA-GAAAAGAATCTTTAATTC-TGTGTTTGTGT 1787
||||||||| | || | | | | | ||| | | |||| | ||| | || ||| |||
Sbjct 1740 TGAGGATGTTC-CTTTCATAAACATATGATGCATAGAACCCGAAATCCCTGA-TTT-TGT 1796
Query 1788 GTGTATAGGTCACTGGTTAGTGAGAAAACTGAAG-AGTTCACTTTCCAATGTTTATATAC 1846
| ||| | ||||| ||||||| ||||| ||||| | ||||||||||||| || |||
Sbjct 1797 GAGTAGA--TCACTTGTTAGTGTGAAAAGTGAAGGA-TTCACTTTCCAATCTTCATAGG- 1852
Query 1847 AAGTTTGCTAATATCAAACGTGGAAGTCACTTTCC 1881
|||||||||||||||| ||||| ||||||||||
Sbjct 1853 --GTTTGCTAATATCAAAAGTGGATGTCACTTTCC 1885
> Ahg914735 jgi|Araly1|914735|Al_scaffold_0001_4989
Length=597
Score = 313 bits (169), Expect = 4e-84
Identities = 287/343 (84%), Gaps = 12/343 (3%)
Strand=Plus/Plus
Query 1053 AAAGGCCACTCCAAAGGCTGTTAAGAAGCTC-ATGAATGTTGAGGGCTTGACGATCTATC 1111
|||||| ||||| |||||||||| ||||| | |||||||||||| | ||||| |||||||
Sbjct 168 AAAGGCAACTCCTAAGGCTGTTATGAAGC-CAATGAATGTTGAGAGTTTGACCATCTATC 226
Query 1112 ATGTAAAAAGCCACTTGCAGAAGTATAGACTAGCCAAGTATATGCCagagaaaaaagaag 1171
| || |||||||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 227 AAGTCAAAAGCCATTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAGAAAACAAG 286
Query 1172 agaa-aaggactgataactcagaagaaaagaaaCTGGCTTTGAGTAAGAGTGAAGCTGAC 1230
|||| || | || |||||| ||||| ||||||| |||| || || | |||||| ||
Sbjct 287 AGAAGAAAAA-TGGTAACTCGGAAGAGAAGAAACCAGCTTCGAATACCAATGAAGCAGAT 345
Query 1231 GAGAAGAA-GAAAGGGGCCATACAATTAACTGAAGCACTGCGTATGCAGATGGAAGTTCA 1289
| | |||| |||||| |||||||| ||||| ||||| || ||||||||||||||||| ||
Sbjct 346 G-GTAGAAAGAAAGGAGCCATACAGTTAACAGAAGCTCTACGTATGCAGATGGAAGTACA 404
Query 1290 GAAGCAATTGCATGAACAGCTGGAGGTGCA-ACGGGTG-CTTCAGCTACGAATTGAAGAG 1347
||||||||||||||||||||| ||||| || | || | ||||| |||| || || ||
Sbjct 405 GAAGCAATTGCATGAACAGCTTGAGGTACAGA-GG-TCACTTCAATTACGGATAGA-GAA 461
Query 1348 CATGCTAAATACTTGGAAAAGATGTTGGAAGAACAACGCAAAA 1390
||||||||||||||||| ||||| ||||||||| | || ||||
Sbjct 462 CATGCTAAATACTTGGAGAAGATCTTGGAAGAAGAGCG-AAAA 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70657404475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5