BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13050.1
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318077 jgi|Araly1|318077|fgenesh1_pm.C_scaffold_3001093 2350 0.0
> Ahg318077 jgi|Araly1|318077|fgenesh1_pm.C_scaffold_3001093
Length=1503
Score = 2350 bits (1272), Expect = 0.0
Identities = 1429/1506 (95%), Gaps = 6/1506 (0%)
Strand=Plus/Plus
Query 101 ATGGCAGATGGGAACACAAGATTCACGGTGGATGAAGCTCTTGTGGCGATGGGATTTGGC 160
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCAGATGGGAAGTCAAGATTCACGGTGGATAAAGCTCTTGTGGCGATGGGATTTGGC 60
Query 161 AAGTTCCAAATTTACGTCCTTGCTTACGCTGGAATGGGTTGGGTTGCAGAGGCCATGGAG 220
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTTCCAGCTTTACGTCCTTGCTTACGCTGGAATGGGTTGGGTTGCAGAGGCCATGGAG 120
Query 221 ATGATGCTTCTCTCTTTCGTTGGACCTGCTGTTCAATCTCTCTGGAATCTCTCTGCACGC 280
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ATGATGCTTCTCTCTTTCGTAGGACCTGCTGTTCAATCGCTCTGGAATCTCTCTGCACGA 180
Query 281 CAGGAAAGCTTAATAACTAGCGTCGTTTTTGCTGGCATGCTCATTGGTGCTTACTCTTGG 340
| ||||||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GATGAAAGCTTAATTACCAGTGTCGTTTTTGCTGGCATGCTCATTGGAGCTTACTCTTGG 240
Query 341 GGCATTGTTTCTGATAAACATGGCCGCAGGAAAGGGTTTATCATAACTGCGGTGGTGACT 400
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GGCATTGTTTCTGACAAACATGGCCGCAGGAAAGGATTTATCATAACTGCGGTGGTGACT 300
Query 401 TTTGTAGCTGGTTTCTTGAGCGCATTTTCACCTAACTACATGTGGTTGATCATTCTTCGC 460
||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 301 TTTATAGCTGGTTTCTTGAGCGCCTTTTCACCAAACTACATGTGGTTGATCATTCTTCGC 360
Query 461 TGTTTGGTTGGTCTTGGGTTGGGAGGAGGTCCTGTTCTTGCTTCTTGGTATCTTGAATTC 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTTGGTTGGTCTTGGGTTGGGAGGAGGTCCTGTTCTTGCTTCTTGGTATCTTGAATTC 420
Query 521 ATACCTGCACCAAGCCGAGGGACTTGGATGGTTGTTTTCTCAGCTTTCTGGACCGTTGGA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATACCTGCACCAAGCCGAGGGACTTGGATGGTTGTTTTCTCAGCTTTCTGGACCGTTGGA 480
Query 581 ACCATATTTGAGGCTTCCCTTGCTTGGTTAGTCATGCCAAGAT-TGGGTTGGAGGTGGTT 639
|||||||| |||||||||||||||||| | ||||||||||| | ||||||||||||||||
Sbjct 481 ACCATATTCGAGGCTTCCCTTGCTTGGGTGGTCATGCCAAG-TCTGGGTTGGAGGTGGTT 539
Query 640 ACTTGCATTCTCTTCGGTACCTTCTTCGTTACTTCTTCTGTTCTATAGGTGGACATCTGA 699
||||||| ||||||| |||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 540 ACTTGCACTCTCTTCTGTACCTTCATCGTTGCTTCTTCTCTTCTATAGGTGGACATCCGA 599
Query 700 GTCTCCTCGGTACTTAATTCTACAAGGCCGGAAAGCCGAAGCTCTTGCCATATTAGAGAA 759
|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 600 GTCTCCTCGGTACTTAATCCTACAAGGCCGGAAAGCTGAAGCTCTTTCCATATTAGAGAA 659
Query 760 GATTGCGAGGATGAACAAAACCCAACTACCTCCGGGTGTTCTCAGTTCAGAGTTGGAGAC 819
||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 GATTGCGAGAATGAACGGAACCCAACTACCTCCGGGTGTTCTCAGTTCAGAATTGGAGAC 719
Query 820 CGAGCTGGAAGAGAATAAAAACATTCCAACAGAAAATACTCATCTTCTCAAGGCTGGAGA 879
|||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 720 CGAGCTGGAAGACAATAAAAACCTTCCAACAGAAAACACTCATCTTCTCAAGCCTGGAGA 779
Query 880 AAGTGGAGAAGCGGTTGCTGTGTCTAAGATTGTACTAAAAGCTGATAAGGAACCAGGTTT 939
|| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 780 AATTGGAGAAGCTGTTGCTGTGTCCAAGATTGTACTAAAAGCTGATAAGGAACCAGCTTT 839
Query 940 CTCATTACTAGCTCTTCTATCTCCAACGCTAATGAAGCGGACTTTGCTACTATGGGTTGT 999
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 840 CTCGTTACTAGCTCTTCTATCTCCAACGCTAATCAAGCGGACTTTGCTACTATGGATTGT 899
Query 1000 GTTCTTTGGAAATGCGTTTGCTTACTATGGCGTTGTCCTTCTCACCACCGAGCTGAACAA 1059
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 900 GTTCTTTGGAAATGCGTTTGCTTATTATGGCGTTGTCCTTCTCACCACTGAGCTGAACAA 959
Query 1060 TTCCCATAACCGCTGCTATCCAACCGAGAAACAGTTGCGAAATTCAAACGATGTTAACTA 1119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 TTCCCATAACCGCTGCTATCCAACCGAGAAACAGTTGGGAAATTCAAACGATGTTAACTA 1019
Query 1120 CAGAG-ACGTTTTCATTGCCAGTTTCGCAGAGTTTCCAGGTCTACTGATATCAGCAGCAA 1178
|| || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 CA-AGGACGTTTTCATCGCCAGTTTTGCAGAGTTTCCAGGTCTACTGATATCAGCAGCAA 1078
Query 1179 TGGTGGATAGACTTGGACGAAAAGCTTCAATGGCATCAATGTTGTTCACATGTTGCATTT 1238
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1079 TGGTGGATAGACTTGGACGAAAAGTTTCAATGGCATCAATGTTATTCACATGTTGCATTT 1138
Query 1239 TCCTTCTCCCTCTGTTATCCCATCAGTCTCCATTCATAACCACCGTTCTTCTCTTCGGCG 1298
||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||| || |
Sbjct 1139 TCCTTCTCCCTCTGTTATCTCATCAATCTCCATTCATAACCACTGCTCTTCTCTTTGGTG 1198
Query 1299 GCCGTATCTGCATCTCGGCAGCTTTCACAGTGGTTTACATATATGCTCCGGAGATATATC 1358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCCGTATCTGCATCTCGGCGGCTTTCACAGTGGTTTACATATATGCTCCGGAGATATATC 1258
Query 1359 CAACGGCAGTGAGAACAACCGGAGTAGGAGTAGG-GAGCTCGGTAGGAAGAATTGGAGGA 1417
||||||||||||||||||| ||||||||||| || ||||||||||||| |||| ||||||
Sbjct 1259 CAACGGCAGTGAGAACAACTGGAGTAGGAGT-GGCGAGCTCGGTAGGACGAATCGGAGGA 1317
Query 1418 ATCTTATGTCCACTCGTAGCCGTTGGATTAGTTCACGGATGCCATCAGACGATCGCTGTT 1477
||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1318 ATCTTGTGTCCACTAGTGGCCGTTGGATTAGTTCACGGATGTCATCAGACGATCGCTGTT 1377
Query 1478 CTTCTGTTTGAGGTTGTGATTCTTGTGTCAGGAATTTGCGTTTGTCTCTTCCCTTTCGAG 1537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 CTTCTGTTTGAGGTTGTGATTCTTGTCTCAGGAATTTGCGTTTGTCTCTTCCCTTTCGAG 1437
Query 1538 ACAAGTGGTCGTGACCTGACAGATAGTATCTCTGCGTCCAAAGAACCACCTTCAGCCTCC 1597
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1438 ACAAGTGGTCGTGATCTGACAGATAGTATCTCGGCGTCCAAAGAACCACCTTCAGCTTCC 1497
Query 1598 GTATAG 1603
||||||
Sbjct 1498 GTATAG 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67610184875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5