BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13065.1
Length=2638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904201 jgi|Araly1|904201|Al_scaffold_0003_1329 3286 0.0
> Ahg904201 jgi|Araly1|904201|Al_scaffold_0003_1329
Length=3279
Score = 3286 bits (1779), Expect = 0.0
Identities = 1909/1973 (97%), Gaps = 4/1973 (0%)
Strand=Plus/Plus
Query 233 GTATCTGCTCTTAATGACGCTTATAAGAGCATGAACTCTCCATCAAAACTCAAAGGCTGG 292
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1309 GTATCGGCTCTTAATGACGCTTATAAGAGCATGAACTCTCCATCAAAACTTAAAGGATGG 1368
Query 293 TCTTCAAGCGGAGGCGATCCTTGTGGCGATTCGTGGGATGGCATTACTTGCAAAGGCTCT 352
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1369 TCTTCAAGCGGAGGCGATCCTTGTGGTGATTCATGGGATGGCATTACATGCAAAGGCTCT 1428
Query 353 TCTGTTACTGAAATAAAAGTATCTGGACGTGGACTCAGTGGATCTTTAGGTTACCAGCTT 412
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1429 TCTGTTACTGAAATAAAAGTATCGGGACGTGGACTCAGTGGATCTTTAGGTTACCAGCTT 1488
Query 413 GGAAACTTGAAATCGCTCACTTACCTTGATGTAAGCAAGAACAATCTTAACGGAAACTTA 472
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GGAAACTTGAAATCACTCACTTACCTTGATGTAAGCAAGAACAATCTTAACGGAAACTTA 1548
Query 473 CCCTACCAGCTTCCTGACAAGCTTACTTATCTAGATGGCTCTGAGAATGACTTCAACGGT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CCCTACCAGCTTCCTGACAAGCTTACTTATCTAGATGGCTCTGAGAATGACTTCAACGGT 1608
Query 533 AATGTGCCATATTCGGTGTCTCTCATGAACGACCTCAGTTACCTAAACCTTGGCCGTAAC 592
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 1609 AATGTGCCATACTCGGTATCTCTCATGAATGATCTCAGTTACCTAAACCTTGGCCGTAAC 1668
Query 593 AACCTCAATGGTGAACTCAGTGACATGTTTCAAAAGCTTCCAAAACTTGAAACAATTGAT 652
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1669 AACCTCAATGGTGAACTCAGCGACATGTTTCAAAAGCTTCCAAAACTTGAAACAATTGAT 1728
Query 653 CTTTCTTCCAATCAACTCACGGGAAAACTACCGCAGAGTTTTGCCAATCTAACAGGTCTT 712
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1729 CTGTCTTCCAATCAACTCACGGGAAAACTACCGCAGAGTTTTGCCAATCTAACAGGCCTT 1788
Query 713 AAAACACTGCATTTGCAAGAAAACCAATTCAAAGGCTCTATAAATGCTCTCAGGGACCTC 772
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 AAAACACTGCACTTGCAAGAAAACCAATTCAAAGGCTCTATAAATGCTCTCAGGGACCTC 1848
Query 773 CCTCAGATTGATGATGTAAACGTAGCAAACAATCAATTTACTGGTTGGATCCCAAACGAG 832
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1849 CCTCAGATTGATGATGTAAACGTCGCAAACAATCAATTTACTGGTTGGATCCCAAACGAG 1908
Query 833 TTGAAGAATATTGGAAACCTTGAAACTGGAGGAAACAAGTGGTCAAGCGGTAGAGCTCCT 892
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 TTGAAGAACATTGGAAACCTTGAAACTGGAGGAAACAAGTGGTCAAGCGGTAGAGCTCCT 1968
Query 893 TCACCACCTCCGGGAACCCGTCACATAGACAGAAACTCATCAGGAGGCGGTGGAGGAAGC 952
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1969 TCACCACCTCCCGGAACCCGTCACATAGACAGAAACTCATCGGGAGGCGGTGGAGGAAGC 2028
Query 953 AGCAAGGCTCTGACACTAGGAGTTATAATAGCGGTGTCTTCTATAGGTGGACTCATTTTA 1012
||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||
Sbjct 2029 AGCAAGGCTCTGACACTTGGAGTTATAATAGCAGTTTCTTGTATAGGTGGACTCATTTTA 2088
Query 1013 TTTGCAGG-GTTGATTGCATTGATTTCTCGAAGAAAGAACTCTAATGATTCTTCTCACTT 1071
|||||||| | ||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 2089 TTTGCAGGAG-TGATTGCATTGTTTTCTCGAAGAAAGAACTCTCATCATTCTTCTCACTT 2147
Query 1072 TTTCGACGACGAGAAAGGAACCAACCGAAGCAAGCCACTCTTCACACCACAATCCTCTCA 1131
||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2148 TTTCGACGAAGAGAAAGGATCCAACCGAAACAAGCCACTCTTCACACCACAATCCTCTCA 2207
Query 1132 GATGCTTCAATTCGATAATATGGAAGAATTCAAAAACCAGAAGACAGTTGATTCTAATAC 1191
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2208 GATGCTTCAATTCGATAATATGGAAGAATTCAAAGGCCAGAAGACAGTTGATTCTAATAC 2267
Query 1192 TTCACTTGAAACAAAGCCTTCTGTTAAAAGAACTTCTTCTGTCAGTTTCAAGAACTCTCC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 TTCACTTGAAACAAAGCCTTCTGTTAAAAGAACTTCTTCTGTCAGTTTCAAGAACTCTCC 2327
Query 1252 TACTTTTCATCTCATACCTTCTACCCAAGTGGCTGCTACCCCTGACCGTTCCTCCACCTC 1311
|||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||| |
Sbjct 2328 TACTTTTCATCTCATACCTTCTACGCAAGTGGCTGCAACCCCTGATCATTCCTCCACC-C 2386
Query 1312 CC-AAGACTCTCCTGATACACGCGGTGTGAAAGCGTTTTCACTAGCGGATTTGCAGAATA 1370
|| || ||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 2387 CCGAAAACTCTCCTGATACACGCGGTGTGAAGGTGTTTTCACTAACGGATTTGCAGAATT 2446
Query 1371 CCGCGTCTTGTTTCTCGCCGAATCGCCTTCTTGGTGAAGGAACCATTGGACGTGTTTATA 1430
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 CCGCGTCTTGTTTCTCTCCGAATCGCCTTCTTGGTGAAGGAACCATTGGACGTGTTTATA 2506
Query 1431 AAGCTAAATTTCAGGATGGAAGGAAATTTGCAGTCAAAGAGATTGATTCTTCTCTGTTAG 1490
||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2507 AAGCTAAATTTCAAGATGGAAGGAAATATGCAGTCAAAGAGATTGATTCTTCACTGTTAG 2566
Query 1491 GAAAAGGCAATCCGGAAGAGTTTTCACACATAGTGTCGAGTATCTCGAGTATTCACCACA 1550
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2567 GAAAAGGAAATCCGGAAGAGTTTTCACACATAGTGTCGAGTATCTCGAGTATTCACCACA 2626
Query 1551 AGAATATGGCAGAACTCGTGGGTTATTGTTCAGAACAAGGAAGAAATATGCTTGTTTATG 1610
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2627 AGAATATGGCAGAACTCGTGGGTTATTGTTCAGAACAAGGAAGGAATATGCTTGTTTATG 2686
Query 1611 AGTATTTCACAAGTGGATCACTTCACAGATTTCTTCACCTGTCTGATGATTTCAGCAAAC 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2687 AGTATTTCACAAGTGGATCACTTCACAGATTTCTTCACCTGTCTGATGATTTCAGCAAAC 2746
Query 1671 CATTGACGTGGAACACCAGAATCCGAATCGCTCTCGGAACTGCTAAAGCTATAGAGTACC 1730
|||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||
Sbjct 2747 CATTAACGTGGAACACCAGAGTCCGAATCGCTCTTGGAACTGCTCAAGCTATAGAGTACC 2806
Query 1731 TTCATGAAACATGTTCGCCTCCGCTAGTTCACAAGAACATCAAGTCATCAAACATTTTAC 1790
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2807 TTCATGAAACATGTTCGCCTCCGCTAGTTCACAAGAACATCAAGTCATCGAACATTTTAC 2866
Query 1791 TTGATAATGAGCTAAATCCCCGCCTCTCAGACTATGGCTTGGCAAACTTTCACCACCGCA 1850
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2867 TCGACAATGAGCTAAATCCCCGCCTCTCAGACTATGGCTTGGCAAACTTTCACCACCGCA 2926
Query 1851 CAAGTCAGAATCTTGGAGTTGGATACAATGCCCCAGAATGCACAGATCCCTCCGCTTACA 1910
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2927 CAAGTCAGAATCTTGGAGTTGGATACAATGCCCCGGAATGCACAGATCCCTCGGCTTACA 2986
Query 1911 CACAAAAGAGCGACGTGTACAGCTTTGGTGTGGTGATGCTTGAGCTGCTAACTGGTCGAA 1970
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2987 CACAAAAGAGCGACGTATACAGCTTTGGTGTGGTGATGCTTGAGCTGCTAACTGGTCGAA 3046
Query 1971 AGCCTTATGACAGTGGGAGGCCAAAAGCAGAACAGTCTTTAGTTCGTTGGGCAAAGCCGC 2030
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3047 CGCCTTATGACAGTGAGAGGCCAAAAGCAGAACAGTCTTTAGTTCGTTGGGCAAAGCCGC 3106
Query 2031 AGCTTAAAGACATGGATACTCTGGATGAAATGGTGGATCCCGCGTTGTGCGGACTCTACG 2090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3107 AGCTTAAAGACATGGATACTCTGGATGAAATGGTGGATCCCGCGTTGTGCGGACTCTACG 3166
Query 2091 CTCCAGAATCTGTATCATCATTCGCGGATATAGTTTCCATCTGCGTAATGACGGAGCCTG 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3167 CTCCAGAATCTGTATCATCATTCGCGGATATAGTTTCCATCTGCGTAATGACGGAGCCTG 3226
Query 2151 GACTTAGGCCTCCAGTGTCAAATGTGGTGGAGGCATTGAAGAGGCTAGTGTAG 2203
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3227 GACTTCGGCCTCCAGTGTCAAATGTGGTGGAGGCATTGAAGAGGCTAGTGTAG 3279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99491719940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5