BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13070.1
Length=2146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478681 jgi|Araly1|478681|fgenesh2_kg.3__1382__AT3G13070.1 3515 0.0
Ahg914728 jgi|Araly1|914728|Al_scaffold_0001_4982 1181 0.0
Ahg474663 jgi|Araly1|474663|fgenesh2_kg.1__4617__AT1G55930.1 863 0.0
> Ahg478681 jgi|Araly1|478681|fgenesh2_kg.3__1382__AT3G13070.1
Length=2133
Score = 3515 bits (1903), Expect = 0.0
Identities = 2060/2137 (96%), Gaps = 5/2137 (0%)
Strand=Plus/Plus
Query 1 ATGATGGGTATGGCACTTGAATTATCTGTTCTGGGTCGATCTGTCATTGACTCTAAAACC 60
|||| ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGACGGGTATGACACTTGAGTTATCTGTTCTGGGTCGATCTGTCATTGACTCGAAAACC 60
Query 61 TTAAATTTGAAGAGATATGGTCAAAAATCGAAGCTTTCAGGAAGATTTCTGCCCAGAGCT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||
Sbjct 61 TTAAATTTGAAGAGATATGGTCAAAAATCGAAGCTTTCCGGAAGATTTCTGACGAGAACT 120
Query 121 GAGCTGCACTGCCCTGTGGCGTTGAGTTCTTCTA-AACACTCCAATTTGAGTTTTAGATT 179
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 GAGCTGCACTGCCCTGTGGCGTTGAGTTCTTCTATAA-GCTCCAATTTGAGTTTTAGATT 179
Query 180 CCGACGAAGTTGTGAATTTAGCTACAGAAGTCGCTTTATGCTGTTTAGCTCCAGTCAATG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCGACGAAGTTGTGAATTTAGCTACAGAAGTCGCTTTATGCTGTTTAGCTCCAGTCAATG 239
Query 240 TCACGAGGGCAGTCAACGAAAGTCCGATTCTGGTGAAAAGGAGCTGGAGTCGATTAAGGT 299
|||||| || ||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 240 TCACGAAGGTAGTCAACAAAATTCCGAATCTGGTGAAAAGGAGCTGGAGTCGATTAAGGT 299
Query 300 TTTGCTGAAACGTGGAATTGTGATAGGAGCTCTAGTCTGTGGAGTTTTCTTGTATGGATG 359
||| ||||||||||||||||| | |||||| |||| |||||||| ||||||||||| ||
Sbjct 300 TTTTCTGAAACGTGGAATTGTTTTGGGAGCTGTAGTGTGTGGAGTGTTCTTGTATGGGTG 359
Query 360 TCAGAAAGTGTTGGCATCGGCTGGTGTGGTCGAAGCAGGCTATGAGGTGTTTGGTCAGAG 419
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 360 CCAAAAAGTGTTGGCATCGGCTGGTGTGGTGGAAGCTGGCTATGAGGTGTTTGGTCAGAG 419
Query 420 CGTAGTGTTGTTTAAGAATGCTTTGCCTAAAATTTACCAGGTTCTTACGGTTCTTAGAGA 479
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 420 CGTAGTGTTGTTTAAGAATGCTTTGCCGAAAATTTACCAGGTTCTTAGGGTTCTTAGAGA 479
Query 480 GCAAGGTCTAATTTTGGCTGCGCTGCTCAGCCTCTCAGCATTCTTCTCTATGGCAGAGAC 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 GCAAGGTCTAATTTTGGCTGCGTTGCTCAGCCTCTCAGCATTCTTCTCTATGGCAGAGAC 539
Query 540 GTCCATTACCACTCTGTGGCCGTGGAAGGTGCGTGAGTTGGCTGAGAAAGAACCAGAGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTCCATTACCACTCTGTGGCCGTGGAAGGTGCGTGAGTTGGCTGAGAAAGAACCAGAGAA 599
Query 600 TGGTGTATTCAGAATGCTCCGGAGTGATGTCACCAGATTCTTGACGACTATACTTATTGG 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TGGTGTATTCAGAATGCTCCGGAGTGATGTTACCAGATTCTTGACGACTATACTTATTGG 659
Query 660 AACAACTGTTGTGAATATTGCGGCAACTGCACTGGTCACTGAAGCAGCAACAGCTATATT 719
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 660 AACAACTGTTGTGAATATTGCGGCAACTGCCCTGGTCACCGAAGCAGCAACAGCTATATT 719
Query 720 TGGGGAAGCTGGTGTTAGTGCTGCCACTGGATTGATGACAGTGGCTATTTTACTCCTGAC 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGGGAAGCTGGTGTTAGTGCAGCCACTGGATTGATGACAGTGGCTATTTTACTCCTGAC 779
Query 780 TGAGATTACTCCAAAAAGTGTTGCTGTGCACAATGCTCAAGAAGTTGCAAGGATTGTGGT 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 TGAGATTACTCCAAAAAGTGTTGCTGTCCACAATGCTCAAGAAGTTGCAAGGATTGTGGT 839
Query 840 CAGGCCAGTGGCGTGGCTTTCCTTAGTATTATATCCTGTCGGAAGAATTGTCACATATCT 899
|||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 840 CAGGCCAGTGGCATGGCTTTCCTTAATATTATATCCTGTCGGGAGGATTGTCACATATCT 899
Query 900 GTCAATGGGAATACTGAAAATTCTTGGTTTGAAAGGACGGAGTGAACCATATGTTACTGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCAATGGGAATACTGAAAATTCTTGGTTTGAAAGGACGGAGTGAACCATATGTTACTGA 959
Query 960 AGATGAGTTGAAACTGATGCTAAGAGGTGCAGAATTGAGTGGTGCCATTGAAGAAGAGGA 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 AGATGAGTTGAAACTGATGCTAAGAGGTGCAGAATTAAGTGGTGCCATTGAAGAAGAGGA 1019
Query 1020 GCAGGATATGATTGAAAATGTGCTAGAGATTAAGGATACCCATGTTCGAGAGGTGATGAC 1079
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1020 GCAGGATATGATTGAAAATGTGTTGGAGATTAAGGATACCCATGTTCGAGAGGTGATGAC 1079
Query 1080 TCCCCTTGTTGATGTAGTCGCAATTGACGCCAGCGCCAGTCTAGTTGATTTCCATAGTAT 1139
||| |||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 1080 TCCTCTTGTTGATGTAGTTGCAATTGACGCCAGCGCCAGTCTAGTCGAGTTCCATAGCAT 1139
Query 1140 GTGGGTGACCCATCAGTACTCAAGGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 GTGGGTGACCCATCAGTACTCAAGGGTGCCTGTTTTTGAGCAGCGTATTGATAATATCGT 1199
Query 1200 GGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAGGGTGATCTGTTAGAAAG 1259
|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1200 GGGAATTGCATATGCTATGGATCTCCTAGATTATGTTCAGAAGGGTGATCTGCTCGAAAG 1259
Query 1260 TACTTCTGTGGGGGACATGGCACATAAACCTGCATATTTCGTCCCTGATTCAATGTCTGT 1319
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 TACTTCTGTGGGGGACATGGCACATAAACCTGCATACTTCGTCCCTGATTCAATGTCTGT 1319
Query 1320 TTGGAATCTTCTTAGAGAATTCCGAATAAGAAAGGTTCACATGGCAGTTGTCCTTAACGA 1379
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1320 TTGGAATCTTCTTAGAGAATTTCGAATAAGAAAGGTTCACATGGCAGTTGTCCTTAATGA 1379
Query 1380 ATATGGTGGAACGATCGGAATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGTTGGTGA 1439
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 ATATGGTGGAACGATTGGAATAGTAACTCTTGAAGATGTTGTCGAAGAGATTGTTGGTGA 1439
Query 1440 AATTTTTGATGAAAACGATTCCAAAGAGGAGATTCAGAAGAAAACAGGATATATTGTCAT 1499
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1440 AATTTTTGATGAAAATGATTCCAAAGAGGAGATTCAGAAGAAAACAGGGTATATTGTCAT 1499
Query 1500 GAGAGATGAGGGCATATATGATGTTGATGCTAATACATCAATTGACCAGCTATCTGAAGA 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GAGAGATGAGGGCATATATGATGTTGATGCTAATACATCAATTGACCAGCTATCTGAAGA 1559
Query 1560 ACTGAATATGAAAATGCCAGAGGGCATTCAGTACGAGACAGTCTCAGGCTTTGTGTGTGA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 ACTGAATATGAAAATGCCAGAGGGCATTCAGTACGAGACAGTCTCAGGCTTTGTGTGTGA 1619
Query 1620 GGCCTTTGGGTATATCCCAAAAACTGGAGAAAGTGTGAAGGTTGTTCTTGAAAAGGAAAG 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGCCTTTGGGTATATCCCAAAAACTGGAGAAAGTGTGAAGGTTGTTCTTGAAAAGGAAAG 1679
Query 1680 CTGGGAAGAGGATGGTGAGGAGGAGGAAGGTAAACAGGAGAGGCAAGAGCCAAAGGAAAA 1739
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1680 CTGGGAAGAGGATGGTGACGAGGAGGAAGGGAAACAGGAGAGGCAAGAGCCAAAGGAAAA 1739
Query 1740 GAACCAAATCTATAGAGTAGAGATACTAGCAGGGAATGCAAGAAAAGTTAGTGCTGTCCG 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GAACCAAATCTATAGAGTAGAGATACTAGCAGGGAATGCAAGAAAAGTTAGTGCTGTCCG 1799
Query 1800 GTTTGAGAGAGTGAACGATATGGATCAAGTGTCGGAGGCAAGTGATGTAAAAAGCATGGT 1859
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1800 GTTTGAAAGAGTGAACGATATGGATCAAGTGTCAGAGGCAAGGGATGTAAAAAGCATGGT 1859
Query 1860 TCCCAAATTTGTAAGGAAATGGAGCAGCGAAGAAGATGATGGGAACTTGTCCAACGAAGA 1919
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1860 TCCCAAATTCGTAAGGAAATGGAGCAGCGAAGAAGATGATGGGAACTTGTCGAACGACGA 1919
Query 1920 AGACCAATCCGAGAATGCTGTCTTAGATGAACATGTACTGGCTGATAATAGCAAGAAACA 1979
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 ---CCAATCCGAGGATGCTGTCTTAGATGAACATGTACTGGCTGATAATAGCAAGAAACA 1976
Query 1980 ACAATGACACTGAGATACAGTTCCTTTTTTCTTTATGCTGCATTTTTCAATTCTTCTTTG 2039
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1977 ACAATGACACTGAGACACAGTTTCTTTTTTCTTTATGCTGCAATTTTCAATTCTTCTTTG 2036
Query 2040 AAAAGGAAAGAAGTAAGCTCACAAATACAAGAAGCTTTCTTCTTTAGATTTAATGTAATA 2099
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2037 AAAAGGAAAGAAGTAAGCTCGCAAATACAAGAAGCTTTCTTCTTTAGATTTAATGTAATA 2096
Query 2100 ATCAGGATGGATAAATTAAGAAATTCGTGTTAGGTAA 2136
||||||||||||||| |||||||||||||||||||||
Sbjct 2097 ATCAGGATGGATAAAATAAGAAATTCGTGTTAGGTAA 2133
> Ahg914728 jgi|Araly1|914728|Al_scaffold_0001_4982
Length=1230
Score = 1181 bits (639), Expect = 0.0
Identities = 968/1123 (86%), Gaps = 37/1123 (3%)
Strand=Plus/Plus
Query 788 CTCCAAAAAGTGTTGCTGTGCACAATGCTCAAGAAGTTGCAAGGATTGTGGTCAGGCCAG 847
||||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||
Sbjct 50 CTCCAAAAAGTGTAGCGGTTCACAATGCTCAAGAGGTTGCAAGGATTGTGGTCAGACCAG 109
Query 848 TGGCGTGGCTTTCCTTAG-TATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATG 906
|||| ||||||||||| | ||||||||||||| |||||| | || |||||||| || |||
Sbjct 110 TGGCTTGGCTTTCCTT-GATATTATATCCTGTTGGAAGAGTAGTGACATATCTTTCGATG 168
Query 907 GGAATACTGAAAATTCTTGGTTTGAAAGGACGGAGTGAACCATATGTTACTGAAGATGAG 966
||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 169 GGAATTCTGAAAATTCTTTGTTTGAAAGGACGGAGTGAGCCATATGTTACTGAAGATGAA 228
Query 967 TTGAAACTGATGCTAAGAGGTGCAGAATTGAGTGGTGCCATTGAAGAAGAGGAGCAGGAT 1026
|||||||| |||||| | ||||||||||| || || || || ||||| || |||||||||
Sbjct 229 TTGAAACTAATGCTACGTGGTGCAGAATTAAGCGGGGCTATAGAAGAGGAAGAGCAGGAT 288
Query 1027 ATGATTGAAAATGTGCTAGAGATTAAGGATACCCATGTTCGAGAGGTGATGACTCCCCTT 1086
||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 289 ATGATTGAAAATGTGTTAGAGATAAAGGATACGCATGTTCGAGAGGTGATGACTCCTCTT 348
Query 1087 GTTGATGTAGTCGCAATTGACGCCAGCGCCAGTCTAGTTGATTTCCAT-AGTATGTGGGT 1145
||||||||||| ||||| || | ||||| ||| || ||||| |||||| | | | |||||
Sbjct 349 GTTGATGTAGTTGCAATAGATGGCAGCGGCAGCCTGGTTGACTTCCATAACT-TTTGGGT 407
Query 1146 GACCCATCAGTACTCAAGGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAAT 1205
||||||||||||||| ||||| ||||||||||||||| | |||||||| ||||| || ||
Sbjct 408 GACCCATCAGTACTCGAGGGTTCCTGTTTTTGAGCAGAGGATTGATAACATAGTTGGTAT 467
Query 1206 TGCATATGCTATGGATCTTCTAGATTATGTT-CAGAAGGGT-GATCTG-TTAGAAAGTAC 1262
|||||||||||||||||| |||||||||||| || |||||| || || || ||||||||
Sbjct 468 TGCATATGCTATGGATCTCCTAGATTATGTTCCA-AAGGGTAAAT-TGCTT-GAAAGTAC 524
Query 1263 TTCTGTGGGGGACATGGCACATAAACCTGCA-TATTTCGTCCCTGATTCAATGTCTGTTT 1321
| |||||| |||||||||||||||||||||| | ||| ||||||||||||||||| ||||
Sbjct 525 TACTGTGGTGGACATGGCACATAAACCTGCATTCTTT-GTCCCTGATTCAATGTCAGTTT 583
Query 1322 GGAATCTTCTTAGAGAATTCCGAATAAGAAAGGTTCACATGGCAGTTGTCCTTAACGAAT 1381
||||| |||||||||| || |||||||||||||||||||||||||||| ||||| ||||
Sbjct 584 GGAATGTTCTTAGAGAGTTTAGAATAAGAAAGGTTCACATGGCAGTTGTTCTTAATGAAT 643
Query 1382 ATGGTGGAACGATCGGAATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGTTGGTGAAA 1441
| |||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 644 ACGGTGGAACCATTGGAATAATAACTCTTGAAGATGTGGTCGAACAGATTGTTGGTGAAA 703
Query 1442 TTTTTGATGAAAACGATTCCAAAG-AGGAGATTCAGAAGAAAACAGGATATATTGTCATG 1500
| ||||||||||||||||| |||| ||||||||||||||||||| || || || || |||
Sbjct 704 TATTTGATGAAAACGATTC-AAAGGAGGAGATTCAGAAGAAAACGGGTTACATCGTGATG 762
Query 1501 AGAG-ATGA-GGGCATATATGATGTTGATGCTAATACATCAATTGACCAGCTATCTGAAG 1558
|||| | || ||| ||||||||||||||||| || || || ||||||||| |||||||||
Sbjct 763 AGAGCA-GAAGGG-ATATATGATGTTGATGCCAACACTTCGATTGACCAGTTATCTGAAG 820
Query 1559 AACTGAATATGAAA-ATGCCAGAGGGCATTCAGTACGAGACAGTCTCAGGCTTTGTGTGT 1617
|||| || || ||| ||| |||| | | | |||||||||||||| ||||| |||
Sbjct 821 AACTTAACAT-AAAGATGTTAGAG----T--A-T--GAGACAGTCTCAGGTTTTGTCTGT 870
Query 1618 GAGGCCTTTGGGTATATCCCAAAAAC-TG-GAGAAAGTGTGAAGGTTGTTCTTGAAAAGG 1675
||||||||||||||||||||||| || || |||| |||||| ||| |||||||||||||
Sbjct 871 GAGGCCTTTGGGTATATCCCAAAGACATGTGAGA--GTGTGACGGTAGTTCTTGAAAAGG 928
Query 1676 AAAGCTGGGAAGAGGATGGTGAGGAGGAGGAAGGTAAACAGGAGAGGCAAGAGCCA-AAG 1734
||| |||||||||| ||| ||| | || || |||||||| ||||| ||||| | | |||
Sbjct 929 AAAACTGGGAAGAGAATGATGAACAAGATGAGGGTAAACACGAGAGTCAAGATC-AGAAG 987
Query 1735 GAAAAGAACCAAATCTATAGAGTAGAGATACTAGCAGGGAATGCAAGAAAAGTTAGTGCT 1794
|||||| ||||| | |||||| |||||||||||||||||||||| |||||||| ||| |
Sbjct 988 GAAAAGCACCAAGTTTATAGACTAGAGATACTAGCAGGGAATGCCAGAAAAGTGAGTACA 1047
Query 1795 GTCCGGTTTGAGA-GAGTGAACGATATGGATCAAGTGTCGGAGGCAAGTGATGTAAAAAG 1853
|||||||| || | |||| || |||||||| ||||||| ||||| | ||||||||||
Sbjct 1048 GTCCGGTTCGA-ACGAGTTAATAATATGGATGAAGTGTCAGAGGCGCGAGATGTAAAAAA 1106
Query 1854 CATGGTTCCCAAATTTGTAAGGAAATGGAGCAGCGAAGAAGAT 1896
|||||||||||| || ||||| ||||||||||| || ||||||
Sbjct 1107 CATGGTTCCCAAGTTCGTAAGAAAATGGAGCAGTGAGGAAGAT 1149
> Ahg474663 jgi|Araly1|474663|fgenesh2_kg.1__4617__AT1G55930.1
Length=2013
Score = 863 bits (467), Expect = 0.0
Identities = 734/862 (85%), Gaps = 22/862 (3%)
Strand=Plus/Plus
Query 262 TCCGATTCTGGTGAAAAGGAGCTGGAGTCGATTAAGG-TTTTGCTGAAACGTGGAATTGT 320
|||||||| | ||||| | || || |||||| ||| ||||||||||||| ||||| ||
Sbjct 311 TCCGATTCCAGCGAAAA--A-CTCGATTCGATT-AGGATTTTGCTGAAACGGGGAATCGT 366
Query 321 GATAGGAGCTCTAGTCTGTGGAGTTTTCTTGTATGGATGTCAG-AAAGTGTTGGCATCGG 379
|||| || | || ||||||||||| |||||||||||| | ||||| || |||||
Sbjct 367 TTTAGGGGCAGTGGTGTGTGGAGTTTTGTTGTATGGATGT-GGTAAAGTATTAGCATCAA 425
Query 380 CTGGTGTGGTCGAAGCAGGCTATGAGGTGTTTGGTCAGAGCGTAGTGTTGTTTAAGAATG 439
| |||||| | | | | || | | ||| || |||| ||| ||||||| |||||||
Sbjct 426 CAAATGTGGT-G--G-A---TGTG-GCT-TTTAGTAAGAGTGTATTGTTGTTGAAGAATG 476
Query 440 CTTTGCCTAAAATTTAC-CAGGTTCTTACGGTTCTTAGAGAGCAAGGTCTAATTTTGGCT 498
||| ||| |||| || | |||||||||| |||||||||||||||||||||||| || |||
Sbjct 477 CTTGGCCAAAAACTT-CTCAGGTTCTTAAGGTTCTTAGAGAGCAAGGTCTAATATTAGCT 535
Query 499 GCGCTGCTCAGCCTCTCAGCATTCTTCTCTATGGCAGAGACGTCCATTACCACTCTGTGG 558
| ||| ||| | | |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct 536 GTGCTTCTCGGTTTATCAGCATTCTTCTCCATGGCAGAGACTTCCATCACCACTCTCTGG 595
Query 559 CCGTGGAAGGTGCGTGAGTTGGCTGAGAAAGAACCAGAGAATGGTGTATTCAGAATGCTC 618
|||||||||||||| ||||||||||| ||||| || || ||||| || ||||| ||||||
Sbjct 596 CCGTGGAAGGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTC 655
Query 619 CGGAGTGATGTCACCAGATTCTTGACGACTATACTTATTGGAACAACTGTTGTGAATATT 678
|| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 656 CGCAGTGATGTTACCAGATTCTTGACAACCATACTTATTGGAACAACTGTTGTGAATATT 715
Query 679 GCGGCAACTGCACT-GGTCACTGAAGCAGCAACAGCTATATTTGGGGAAGCTGGTGTTAG 737
||||| ||||| || ||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 716 GCGGCGACTGC-CTTGGTCACTAAAGCAGCAACAGCTATTTTTGGTGAAGCTGGTGTTAG 774
Query 738 TGCTGCCACTGGATTGATGACAGTGGCTATTTTACTCCTGACTGAGATTACTCCAAAAAG 797
||| ||||| ||| ||||||| || || || |||||||||||||| || ||||| |||||
Sbjct 775 TGCAGCCACAGGAGTGATGACGGTAGCCATATTACTCCTGACTGAAATAACTCCGAAAAG 834
Query 798 TGTTGCTGTGCACAATGCTCAAGAAGTTGCAAGGATTGTGGTCAGGCCAGTGGCGTGGCT 857
||| || || |||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 835 TGTAGCGGTTCACAATGCTCAAGAGGTTGCAAGGATTGTGGTCAGACCAGTGGCTTGGCT 894
Query 858 TTCCTT-AGTATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATGGGAATACTGA 916
|||||| | ||||||||||||| |||||| | || |||||||| || |||||||| ||||
Sbjct 895 TTCCTTGA-TATTATATCCTGTTGGAAGAGTAGTGACATATCTTTCGATGGGAATTCTGA 953
Query 917 AAATTCTTGGTTTGAAAGGACGGAGTGAACCATATGTTACTGAAGATGAGTTGAAACTGA 976
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 954 AAATTCTTGGTTTGAAAGGACGGAGTGAGCCATATGTTACTGAAGATGAATTGAAACTAA 1013
Query 977 TGCTAAGAGGTGCAGAATTGAGTGGTGCCATTGAAGAAGAGGAGCAGGATATGATTGAAA 1036
||||| | || |||||||| ||||| || || ||||| || |||||||||||||||||||
Sbjct 1014 TGCTACGCGGAGCAGAATTAAGTGGAGCTATAGAAGAGGAAGAGCAGGATATGATTGAAA 1073
Query 1037 ATGTGCTAGAGATTAAGGATACCCATGTTCGAGAGGTGATGACTCCCCTTGTTGATGTAG 1096
||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1074 ATGTGTTAGAGATAAAGGATACGCATGTTCGAGAGGTGATGACTCCTCTTGTTGATGTAG 1133
Query 1097 TCGCAATTGACGCCAGCGCCAG 1118
| ||||| || | ||||| |||
Sbjct 1134 TTGCAATAGATGGCAGCGGCAG 1155
Score = 710 bits (384), Expect = 0.0
Identities = 564/650 (87%), Gaps = 16/650 (2%)
Strand=Plus/Plus
Query 1255 GAAAGTACTTCTGTGGGGGACATGGCACATAAACCTGCA-TATTTCGTCCCTGATTCAAT 1313
|||||||| |||||| ||||||||| |||||||||||| | ||| ||||||||||| ||
Sbjct 1229 GAAAGTACCACTGTGGTGGACATGGCTCATAAACCTGCATTCTTT-GTCCCTGATTCGAT 1287
Query 1314 GTCTGTTTGGAATCTTCTTAGAGAATTCCGAATAAGAAAGGTTCACATGGCAGTTGTCCT 1373
||| |||||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct 1288 GTCAGTTTGGAATCTTCTTAGAGAGTTTAGAATAAGAAAGGTTCACATGGCAGTTGTTCT 1347
Query 1374 TAACGAATATGGTGGAACGATCGGAATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGT 1433
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 TAATGAATACGGTGGAACCATCGGAATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGT 1407
Query 1434 TGGTGAAATTTTTGATGAAAACGATTCCAAAG-AGGAGATTCAGAAGAAAACAGGATATA 1492
||||||||| ||||||||||||||||| |||| |||| |||||||||||||| || ||||
Sbjct 1408 TGGTGAAATATTTGATGAAAACGATTC-AAAGGAGGAAATTCAGAAGAAAACGGGTTATA 1466
Query 1493 TTGTCATGAGAG-ATGAGGGCATATATGATGTTGATGCTAATACATCAATTGACCAGCTA 1551
| || ||||||| | ||||| ||||||||||||||||| || || || || |||||| ||
Sbjct 1467 TCGTGATGAGAGCA-GAGGGGATATATGATGTTGATGCCAACACTTCGATAGACCAGTTA 1525
Query 1552 TCTGAAGAACTGAATATGAAA-ATGCCAGAGGGC-ATTCAGTACGAGACAGTCTCAGGCT 1609
||||||||||| || || ||| ||| |||||||| || ||||| |||||||||||||| |
Sbjct 1526 TCTGAAGAACTCAACAT-AAAGATGGCAGAGGGCCAT-CAGTATGAGACAGTCTCAGGTT 1583
Query 1610 TTGTGTGTGAGGCCTTTGGGTATATCCCAAAAACTGGAGAAAGTGTGAAGGTTGTTCTTG 1669
|||| |||||||||||||||||||||||||| || || || ||||||| ||| |||||||
Sbjct 1584 TTGTCTGTGAGGCCTTTGGGTATATCCCAAAGACAGGTGAGAGTGTGACGGTGGTTCTTG 1643
Query 1670 AAAAGGAAAGCTGGGAAGAGGATGGTGAGGAGGAGGAAGGTAAACAGGAGAGGCAAGAGC 1729
||||||||| |||||||||| ||| ||| | || || ||||| |||||| | ||||| |
Sbjct 1644 AAAAGGAAAACTGGGAAGAGAATGATGAACAAGACGAGGGTAAGCAGGAGCGTCAAGATC 1703
Query 1730 CA-AAGGAAAAGAACCAAATCTATAGAGTAGAGATACTAGCAGGGAATGCAAGAAAAGTT 1788
| ||||| ||| ||||||| |||||| ||||| |||||||||||||||| ||||||||
Sbjct 1704 -AGAAGGAGAAGCACCAAATTTATAGACTAGAGGTACTAGCAGGGAATGCCAGAAAAGTG 1762
Query 1789 AGTGCTGTCCGGTTTGAGA-GAGTGAACGATATGGATCAAGTGTCGGAGGCAAGTGATGT 1847
||||| |||||||| || | |||| || ||||||||||||||||| ||||| | |||||
Sbjct 1763 AGTGCAGTCCGGTTCGA-ACGAGTTAATGATATGGATCAAGTGTCAGAGGCCCGGGATGT 1821
Query 1848 -AAAAAGCATGGTTCCCAAATTTGTAAGGAAATGGAGCAGCGAAGAAGAT 1896
||||| |||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 1822 GAAAAA-CATGGTTCCCAAGTTCGTAAGAAAATGGAGCAGCGAGGAAGAT 1870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80751319400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5