BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13110.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929041 jgi|Araly1|929041|scaffold_301498.1 1751 0.0
> Ahg929041 jgi|Araly1|929041|scaffold_301498.1
Length=1215
Score = 1751 bits (948), Expect = 0.0
Identities = 1135/1223 (93%), Gaps = 22/1223 (2%)
Strand=Plus/Plus
Query 174 CGAGaaaaaaaaaaaaTGTTGCCGGTCACAAGTCGCCGCCACTTCACAATGTCCCTATAT 233
||| ||||| || |||||| || ||||||||||||||||| ||| ||||||||||||||
Sbjct 6 CGATAAAAATAAGCAATGTTCCCCGTCACAAGTCGCCGCCATTTCTCAATGTCCCTATAT 65
Query 234 ATGCTCCGTTCATCTTCTCCACACATCAATCATCACTCTTTCCTTCTTCCTTCTTTTG-T 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 66 ATGCTCCGTTCATCTTCTCCACACATCAATCATCACTCTTTCCTTCTTCCTTCTTCTGTT 125
Query 293 T--TCCTCCAAATTCAAACACCATACTTTATctcctcctccttctcctcctcctcctcct 350
| ||||||| ||| | || || | | | | |||| | | |||||||||||
Sbjct 126 TCCTCCTCCACTTTC--TCTCC-TA--TCAAAGAC-CAACCTT-T-AT-CTCCTCCTCCT 176
Query 351 cctATGGCTGCGTGCATCGACACCTGCCGCACTGGTAAACCCCAGATTTCTCCTCGCGAT 410
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 177 CCTATGGCTGCGTGCATCGACACCTGCCGTACTGGTAAACCCCAGATTTCTCCTCGCGAT 236
Query 411 TCTTCTAAACACCACGACGATGAATCTGGCTTTCGTTACATGAAC-TACTTCCGTTATCC 469
||||| ||| ||||||| |||||||||||||||||||||||| || ||||||||||| ||
Sbjct 237 TCTTCAAAAAACCACGATGATGAATCTGGCTTTCGTTACATG-ACTTACTTCCGTTACCC 295
Query 470 TGATCGATCTTCCTTCAATGGAACCCAGACCAAAACCCTCCATACTCGTCCTTTGCTTGA 529
||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 296 TGATCGAGCTTCCTTCAACGGAACCCAGACGAAAACCCTCCATACTCGTCCTTTGGTTGA 355
Query 530 AGATCTCGATCGCGACGCTGAAGTCGATGATGTTTGGGCCAAAATCCGAGAAGAGGCTAA 589
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 356 AGATCTCGATCGCGACGCTGAAATCGATGATGTTTGGGCCAAAATCCGAGAAGAAGCTAA 415
Query 590 ATCTGATATCGCCAAAGAACCTATTGTTTCC-GCTTATTATCACGCTTCGATTGTTTCTC 648
|||||| ||||| |||||||||||||||||| || |||||||||||||||||||| || |
Sbjct 416 ATCTGACATCGCGAAAGAACCTATTGTTTCCGGC-TATTATCACGCTTCGATTGTGTCCC 474
Query 649 AGCGTTCGTTGGAAGCTGCGTTGGCGAATACTTTATCTGTTAAACTCAGCAATTTGAATC 708
|| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 475 AGAGATCGTTGGAAGCTGCGTTGGCCAATACTTTATCTGTTAAACTCAGCAATTTGAATC 534
Query 709 TTCCAAGCAACACGCTTTTCGATTTGTTCTCTGGTGTTCTTCAAG-GAAACCCAGATATT 767
||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||
Sbjct 535 TTCCAAGCAACACGCTTTTCGATTTGTTCTCCGGTGTTCTTCAAGAGAA-CCCAGAAATT 593
Query 768 GTTGAATCTGTCAAGCTAGATCTTTTAGCTGTTAAGGAGAGAGATCCTGCTTGTATAAGC 827
||||||||||| |||| |||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 594 GTTGAATCTGTGAAGCAAGATCTGTTAGCTGTTAAGGAAAGAGATCCAGCTTGTATAAGC 653
Query 828 TACGTTCATTGTTTCCTTCACTTTAAAGGCTTCCTCGCTTGTCAAGCGCATCGTATTGCT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TACGTTCATTGTTTCCTTCACTTTAAAGGCTTCCTCGCTTGTCAAGCGCATCGTATTGCT 713
Query 888 CATGAGCTTTGGACTCAGGACAGAAAAATCCTAGCTTTGTTGATCCAGAACAGAGTCTCT 947
|||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 714 CATGAGCTTTGGACGCAGGACCGAAAAATCCTAGCTTTGTTGATTCAGAACAGAGTATCT 773
Query 948 GAAGCCTTCGCTGTTGATTTCCACCCTGGAGCTAAAATCGGTACCGGGATTTTGCTAGAC 1007
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 774 GAAGCCTTCGCTGTTGATTTCCACCCTGGAGCTAAAATCGGAACCGGGATTTTGCTAGAC 833
Query 1008 CATGCTACGGCTATTGTGATCGGTGAGACGGCGGTTGTGGGGAACAATGTTTCGATTCTC 1067
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 834 CACGCTACGGCTATCGTGATCGGCGAGACGGCGGTTGTGGGGAACAATGTTTCGATTCTC 893
Query 1068 CATAACGTTACGCTTGGAGGAACGGGGAAACAGTGTGGAGATAGGCACCCGAAGATTGGC 1127
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 894 CATAACGTTACGCTTGGAGGGACAGGGAAACAGTGTGGAGATAGGCATCCGAAGATTGGC 953
Query 1128 GATGGGGTTTTGATTGGAGCTGGGACTTGTATTTTGGGGAATATCACGATTGGTGAAGGA 1187
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 954 GATGGTGTTTTGATTGGTGCTGGGACTTGTATTTTGGGGAATATTACGATTGGTGAAGGA 1013
Query 1188 GCTAAGATTGGTGCGGGGTCGGTGGTGTTGAAAGACGTGCCGCCGCGTACGACGGCTGTT 1247
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1014 GCTAAGATTGGTGCTGGGTCGGTGGTGTTGAAGGATGTGCCGCCGCGTACGACGGCTGTG 1073
Query 1248 GGAAATCCGGCGAGGTTGCTTGGTGGTAAAGATAATCCGAAAACGCATGACAAGATTCCT 1307
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1074 GGAAATCCGGCGAGGTTGCTTGGTGGTAAAGATAATCCGAAAACGCACGACAAGATTCCT 1133
Query 1308 GGTTTGACTATGGACCAGACGTCGCATATATCCGAGTGGTCGGATTATGTAATTTGAAAA 1367
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GGTTTGACTATGGACCAGACATCGCATATATCCGAGTGGTCGGATTATGTAATTTGAAAA 1193
Query 1368 AGTCttt--gt-ttttggttgtt 1387
||||||| || ||||| |||||
Sbjct 1194 AGTCTTTTTGTGTTTTG-TTGTT 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5