BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13120.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478688 jgi|Araly1|478688|fgenesh2_kg.3__1389__AT3G13120.1 1387 0.0
Ahg359796 jgi|Araly1|359796|fgenesh1_pg.C_scaffold_1061000001 532 1e-150
> Ahg478688 jgi|Araly1|478688|fgenesh2_kg.3__1389__AT3G13120.1
Length=946
Score = 1387 bits (751), Expect = 0.0
Identities = 887/950 (93%), Gaps = 19/950 (2%)
Strand=Plus/Plus
Query 1 ATGGATAACCCTCaagaagaagctgctgaagaagaaacctcatccttcgaacgtt-a-a- 57
||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||| | |
Sbjct 1 ATGGATAACCCTCGAGACGAAACAGCTGAAGAAGAAACCTCATCCTTCGAACGTTAAGAG 60
Query 58 g-ag--gaagaagaataagagaaATCGATTCGTGGTTTTGGGAAAATTCAATGGCGGTTT 114
| || ||||||||| ||||||||||||||| | | || ||||||||| |||||||| |
Sbjct 61 GAAGAAGAAGAAGAAGAAGAGAAATCGATTC-TTG-TTCAGGAAAATTCCATGGCGGTGT 118
Query 115 CTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTA 174
|||||||||| ||||||||||| || || |||| ||||||||||||||||||||||||||
Sbjct 119 CTACTGTATCTTCGTTTCTATTACCCTCCTTCGTCATTCCAAGCTCTTCGCCTTCTTCTA 178
Query 175 CCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCG 234
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 179 CCAGACTCAAAGTCTCTCTGCTACCTTCATCGTCTACCCATGGCGGCCTTAGTTCCTGCG 238
Query 235 TCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATC 294
||||||| ||||| ||||| || ||||||||||||||||| |||||||| ||||||||||
Sbjct 239 TCCTTACTAAACCCTCCGTTTCTCTTACGAAGGTCTTCGCGGTTCCCGAAACCCTAGATC 298
Query 295 CAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTG 354
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 CAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCCTCCATCAGTG 358
Query 355 TAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGG 414
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TAGATGCTGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGG 418
Query 415 TGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAA 474
||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 419 TGCCTCTTATTGAGGACTCATGCAAGCAGATTCTTGATGCTGCTAGAAATACTAATGCAA 478
Query 475 AGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTC 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 AGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTTAAGTCTC 538
Query 535 CTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTG 594
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 CTCACGTACACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGTATGATTG 598
Query 595 ATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTG 658
Query 655 GTGTCGATGTGGAAGTGAAGCTCTGAAGAA-GAAGCGTAACTACAATGATGTGATGGGCA 713
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 659 GTGTAGATGTGGAAGTGAAGCTCTGAAGAACGA-GCGTAACTACAATGATGTGATGGGCA 717
Query 714 CTTTTGCATTGAATGAACAGACTGTTTCAGATCAACTACATTGCTTAGAACTGGTAAGCC 773
|||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 718 CTTTTGCATTAAATGAACAGACTGTTTCAGATCAACTACATTTCTTAGAACCGGTAAGCC 777
Query 774 TTGTATCATCTTTTTTGAGAACCTTTGTAACGAAAATGTAAGTTGTATTATCTGGTCCTT 833
||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 778 TTGTATCATCTTTTT-GAGAACCTCTGTAATGAAAATGTAAGTTGTATGATCTGGTCCTT 836
Query 834 GG-AATCT---A-TCTTTAGCGATGCTTGGTTCTTAGTTGATGAACATATCCTTAATTAA 888
| || | | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 AGCAAAGTTGGAATCTTTAGCGATGTTTGGTTCTTAGTTGATGAACATATCCTTAATTAA 896
Query 889 GCAAGTTCAAAGGAATTT---GTTTTTGTTTTACTAATTGTTATGCAGTT 935
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 GCAAGTTCAAAGGAATTTTTTGTTTTTGTTTTACTAATTGTTATGCAGTT 946
> Ahg359796 jgi|Araly1|359796|fgenesh1_pg.C_scaffold_1061000001
Length=312
Score = 532 bits (288), Expect = 1e-150
Identities = 304/312 (97%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 369 ATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAG 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAG 60
Query 429 GACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCT 488
||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 61 GACTCATGCAAGCAGATTCTTGATGCTGCTAGAAATACTAATGCAAAGACGATGGGTCCT 120
Query 489 GTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAG 548
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 GTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTTAAGTCTCCTCACGTACACAAG 180
Query 549 GATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCG 608
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGTATGATTGATATTCTCTACCCG 240
Query 609 ACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAA 668
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 ACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAA 300
Query 669 GTGAAGCTCTGA 680
||||||||||||
Sbjct 301 GTGAAGCTCTGA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5