BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13130.1
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478689 jgi|Araly1|478689|fgenesh2_kg.3__1390__AT3G13130.1 1029 0.0
> Ahg478689 jgi|Araly1|478689|fgenesh2_kg.3__1390__AT3G13130.1
Length=816
Score = 1029 bits (557), Expect = 0.0
Identities = 692/753 (92%), Gaps = 26/753 (3%)
Strand=Plus/Plus
Query 1 AATTACACTTTAACCTGTTTAATTCcttcttcttcttcttcttATTCTAGTCCTCACCAT 60
|||||||||| ||||||||| | | |||| ||||||||||||||||||||| ||| |||
Sbjct 1 AATTACACTTAAACCTGTTT-A-T--TTCTCCTTCTTCTTCTTATTCTAGTCTTCATCAT 56
Query 61 TCACTCACAAAACCAAAGAAAAGAAACCAGAGAGATGGATCAAATAAAACCGGAGTTTCT 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TCACTCACAAAAACAAAGAAAAGAAACCAGAGAGATGGATCAAATAAAACCGGAGTTTCT 116
Query 121 GAAGAAATTGACCAAGTTTATAGCAGTTTCGATGTGGATTTTATCTCTTTTAACCAGC-C 179
||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| | |
Sbjct 117 GAAAAAATTGACGAAGTTTATAGCAGTTTCGATATGGATTTTCTCTCTTTTAACCA-CTC 175
Query 180 ACGACTTCTATTTATATAGGTTCATGATCCAACTCGTAACACACGCAGTAGATAAAAACT 239
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 176 ACAACTTCTATTTATATAGATTCATGATTCAACTCGTAACACACGCAGTAGATAAAAACT 235
Query 240 ACATGTTCCTCCTCTGCAATGGTCTCGTAGTGGTTGTTGCTAAGTGTTCTGGTTTGGTCG 299
|||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 236 ACATGTTCCTCCTCTGCAATGGTCTCTTAGTGGTTGTTGCGAAGTGCTCTGGTTTGGTCG 295
Query 300 CTTCGTCCAAACCAATAGAGAAAATTTGGAGTAATACCGATAAAACCTTTGATTATGGAG 359
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 296 CTTCGTCGAAACCAATAGAGAAATTTTGGAGTAATACCGATAAAACCTTTGATTATGGAG 355
Query 360 ATTTCGAGAGTTACACTACGATACTGGAGCTAG-AGTATAAATCTGATCATGGAATAGGA 418
||||||||||||||| | ||||| ||||| | | ||||||| |||| | |||||||||||
Sbjct 356 ATTTCGAGAGTTACAATGCGATATTGGAGGT-GAAGTATAATTCTGTTAATGGAATAGGA 414
Query 419 ACAGAG---TCC--T-TTCTTGCAGAGGAAGTTACAGTGGAGGAAGATACAAAACATCAA 472
|||||| ||| | ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 415 ACAGAGTACTCCTTTCTTCTTGCAGAGGAAGTTACTGTAGAGGAGGATACAAAACATCAA 474
Query 473 GAAACCGAGGACAACGAAGAAGAAGATGACGACGACAACACATTAGCAGATAATGATGGA 532
|||||||| || || | |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 475 GAAACCGAAGA-AA--ACGAAGAAGATGACGATGACAACACATTAGCAGATAATGAAGGA 531
Query 533 GAGGAAGAGTGTGGTCTTCGTGGCGGATCTATAAACGAGGAAGAAGAAG--G-GAACGTA 589
||||||||||||| |||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 532 GAGGAAGAGTGTGATCTTCGTGACGGATCTATAAACGAGGAAGAAGAAGAAGAGAACGTA 591
Query 590 GGAGTGATGACATCGACGGAGGAGGAGATGAATAAGAAATTCGACGAGTTCATCAGAAAG 649
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 592 GGAGTGATGACATCGACGGAGGAGGAGATGAATAAGAAGTTCGACGAGTTCATCAGAAAG 651
Query 650 ATGAAGGAAGAGCTTAGAATCGAAGCTAAACGGCATTTAATCCTTGTTTGAGTACT--TT 707
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 652 ATGAAGGAAGAGCTTAGAATCGAAGCTAAACGGCATTTAATACTTGTTTGAGTACTACTT 711
Query 708 CTA-A-TTAATCAGTTTTGTTT-AAGTTTAATC 737
|| | |||||||||||||||| ||||||||||
Sbjct 712 -TATAGTTAATCAGTTTTGTTTTAAGTTTAATC 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31032054438
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5