BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13130.1 Length=839 Score E Sequences producing significant alignments: (Bits) Value Ahg478689 jgi|Araly1|478689|fgenesh2_kg.3__1390__AT3G13130.1 1029 0.0 > Ahg478689 jgi|Araly1|478689|fgenesh2_kg.3__1390__AT3G13130.1 Length=816 Score = 1029 bits (557), Expect = 0.0 Identities = 692/753 (92%), Gaps = 26/753 (3%) Strand=Plus/Plus Query 1 AATTACACTTTAACCTGTTTAATTCcttcttcttcttcttcttATTCTAGTCCTCACCAT 60 |||||||||| ||||||||| | | |||| ||||||||||||||||||||| ||| ||| Sbjct 1 AATTACACTTAAACCTGTTT-A-T--TTCTCCTTCTTCTTCTTATTCTAGTCTTCATCAT 56 Query 61 TCACTCACAAAACCAAAGAAAAGAAACCAGAGAGATGGATCAAATAAAACCGGAGTTTCT 120 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 TCACTCACAAAAACAAAGAAAAGAAACCAGAGAGATGGATCAAATAAAACCGGAGTTTCT 116 Query 121 GAAGAAATTGACCAAGTTTATAGCAGTTTCGATGTGGATTTTATCTCTTTTAACCAGC-C 179 ||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| | | Sbjct 117 GAAAAAATTGACGAAGTTTATAGCAGTTTCGATATGGATTTTCTCTCTTTTAACCA-CTC 175 Query 180 ACGACTTCTATTTATATAGGTTCATGATCCAACTCGTAACACACGCAGTAGATAAAAACT 239 || |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 176 ACAACTTCTATTTATATAGATTCATGATTCAACTCGTAACACACGCAGTAGATAAAAACT 235 Query 240 ACATGTTCCTCCTCTGCAATGGTCTCGTAGTGGTTGTTGCTAAGTGTTCTGGTTTGGTCG 299 |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct 236 ACATGTTCCTCCTCTGCAATGGTCTCTTAGTGGTTGTTGCGAAGTGCTCTGGTTTGGTCG 295 Query 300 CTTCGTCCAAACCAATAGAGAAAATTTGGAGTAATACCGATAAAACCTTTGATTATGGAG 359 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 296 CTTCGTCGAAACCAATAGAGAAATTTTGGAGTAATACCGATAAAACCTTTGATTATGGAG 355 Query 360 ATTTCGAGAGTTACACTACGATACTGGAGCTAG-AGTATAAATCTGATCATGGAATAGGA 418 ||||||||||||||| | ||||| ||||| | | ||||||| |||| | ||||||||||| Sbjct 356 ATTTCGAGAGTTACAATGCGATATTGGAGGT-GAAGTATAATTCTGTTAATGGAATAGGA 414 Query 419 ACAGAG---TCC--T-TTCTTGCAGAGGAAGTTACAGTGGAGGAAGATACAAAACATCAA 472 |||||| ||| | ||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 415 ACAGAGTACTCCTTTCTTCTTGCAGAGGAAGTTACTGTAGAGGAGGATACAAAACATCAA 474 Query 473 GAAACCGAGGACAACGAAGAAGAAGATGACGACGACAACACATTAGCAGATAATGATGGA 532 |||||||| || || | |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 475 GAAACCGAAGA-AA--ACGAAGAAGATGACGATGACAACACATTAGCAGATAATGAAGGA 531 Query 533 GAGGAAGAGTGTGGTCTTCGTGGCGGATCTATAAACGAGGAAGAAGAAG--G-GAACGTA 589 ||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||| Sbjct 532 GAGGAAGAGTGTGATCTTCGTGACGGATCTATAAACGAGGAAGAAGAAGAAGAGAACGTA 591 Query 590 GGAGTGATGACATCGACGGAGGAGGAGATGAATAAGAAATTCGACGAGTTCATCAGAAAG 649 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 592 GGAGTGATGACATCGACGGAGGAGGAGATGAATAAGAAGTTCGACGAGTTCATCAGAAAG 651 Query 650 ATGAAGGAAGAGCTTAGAATCGAAGCTAAACGGCATTTAATCCTTGTTTGAGTACT--TT 707 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 652 ATGAAGGAAGAGCTTAGAATCGAAGCTAAACGGCATTTAATACTTGTTTGAGTACTACTT 711 Query 708 CTA-A-TTAATCAGTTTTGTTT-AAGTTTAATC 737 || | |||||||||||||||| |||||||||| Sbjct 712 -TATAGTTAATCAGTTTTGTTTTAAGTTTAATC 743 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31032054438 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5