BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13140.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318086 jgi|Araly1|318086|fgenesh1_pm.C_scaffold_3001102 760 0.0
> Ahg318086 jgi|Araly1|318086|fgenesh1_pm.C_scaffold_3001102
Length=552
Score = 760 bits (411), Expect = 0.0
Identities = 508/555 (92%), Gaps = 6/555 (1%)
Strand=Plus/Plus
Query 1 ATGGATTACACTGTCGATATGAGCTGTGTGATGAAAGTGAACAGAGGTTGCCAGCTTTGT 60
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1 ATGGATTACACTGTCGATATGAGCTGTGTGATGAAAGTGAACAGAAGCTGCGAGCTTTGT 60
Query 61 CGGCAAAAAGTGTCAGAAGTCATGCATTGTGTCTACGGAGTTTACTCTGTGGATTTCACC 120
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 61 CGGCAAAAAGTGTCAGAAGTGATGCATTGTGTCAACGGAGTTTACTCTGTGGATTTC-GT 119
Query 121 G-GAGACGACAACTCAATGAAACTCAAGGCCAGAGTTAACCCTAATGTATTGTTGGCTGT 179
| | |||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 120 GAGTGACGACAACTCAATGAAACTCAAGGCGAGCGTTAACCCTAATATATTGTTGGCTGT 179
Query 180 TGCTGAACGGTACGGTGAACATGGAAAGATCACTAATCTCCGTTTCGACGGAGAAGTTAT 239
| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 180 TATTGAACGGTACGGTGAACATGGAAAGATCACTAATCTCCGTTTCGACGGGGATGTTAT 239
Query 240 GACTCCTCGCGGCGGCGGTGGTTATTACGGTCAATCAGGCTATTACATTCCTACCACCTC 299
||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||| |
Sbjct 240 GACTCCTCGTGGCGGCGGCGGTTATTACGGTCAATCAGGATATTACATTCCTTCCACCGC 299
Query 300 CCGTGGTAACTATGCATATCCTTCGTTGTATCAATATCCTCCTCCGCCACATGTTTATGG 359
||||||||| ||||||||||| |||||||||| ||| ||||||||||| ||||||||||
Sbjct 300 CCGTGGTAATTATGCATATCCCTCGTTGTATCCATACCCTCCTCCGCCGTATGTTTATGG 359
Query 360 CGGAAACTATGCTCATCC-GCCGTCAAATCCCCCGCGGCACT-CGGAGGCACCACGGCAG 417
||||||||||||||| || || ||| ||||| |||||||| | |||||||||||||||||
Sbjct 360 CGGAAACTATGCTCACCCTGC-GTCTAATCCGCCGCGGCA-TACGGAGGCACCACGGCAG 417
Query 418 GCAACTAACCCGCATACAACACCGCCGTATTATAGTCTACCGGCGCCACCACCAAGAACG 477
| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 418 GTGACTAACCCGCATACAACACCGCCGTCTTATAGTCTACCGGCGCCACCGTCAAGACCG 477
Query 478 TTGCATAGTTACTCTTACGTAGAACCGCAGTATCGGATGTCGAGTTCGTCGGGTAGTGGA 537
||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||
Sbjct 478 GTGCATAGTTACGCTTACGTAGAACCGCAGTATCGGACGTCGGGTTCGTCGGGTAAAGGA 537
Query 538 TGCGTGATCATGTAA 552
|||||||||||||||
Sbjct 538 TGCGTGATCATGTAA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5