BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13150.1
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929045 jgi|Araly1|929045|scaffold_301502.1 2196 0.0
> Ahg929045 jgi|Araly1|929045|scaffold_301502.1
Length=1629
Score = 2196 bits (1189), Expect = 0.0
Identities = 1484/1619 (92%), Gaps = 49/1619 (3%)
Strand=Plus/Plus
Query 1 TTTCACCACCTGCACGAAGCTATGAGCAAGGTAGGCTCGTCGCTGTACAGTCGCCTCCAT 60
|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct 2 TTTCACCACCTGCACGAAGCTATGAGCAAGGTGGGCTCGTCTCTGTTCAGTCGCCTCCAT 61
Query 61 GGAATCTTCAAAGAATCTTCAATCGCCACTGCTAAGTCCGCAAAACCCAGAAGCCAAACC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 GGAATCTTCAAAGAATCTTCAATCGCCACCGCTAAGTCCGCAAAACCCAGAAGCCAAACC 121
Query 121 AAATCCACCAAATTCCCTAGTAAATTGAAGGCATCCA------C---CGCCTCTGTAGGA 171
||||||| |||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 122 AAATCCAACAAATTTCCTAGTAAATTGAAGGCATCCACCGCTTCTTTCGCCTCTGTAGGA 181
Query 172 GACGGAGGTCAA-TCGTCGAATGACGCCAAGGATTCTAAAAATTCGAAATTGACGCAGAA 230
|||||||| ||| | |||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 182 GACGGAGG-CAATTTGTCGAATGACGCCAAGGAATCGAAAAATTCGAAATTGACGAAGAA 240
Query 231 AGTAGAGAAGTTCAAGAGATCCTGCGAGTCTGAGAGTTTCCGGCAAGTCCATGGACTCTA 290
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 241 AGTAGAGAAGTTCAAGAGATCCTGTGAGTCGGAGGGTTTCCGGCAAGTCCATGGACTCTA 300
Query 291 CAGTGCGTTTATCCGCCGTCTCAGGGAAGCAAAGAAGTTCTCAACGATCGACGAAGTTCT 350
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 301 CAGTGCGTTTATCCGGCGTCTCAGGGAAGCAAAGAAGTTCTCAACGATCCATGAAGTTCT 360
Query 351 TCAATACCAGAAGAAGTTCGATGACATAAAGTCGGAGGATTTCGTTATCCGTATAATGCT 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 TCAATACCAGAAGAAGTTCGATGACATAAAGTCGGAGGATTTCGTTATCCGTATGATGCT 420
Query 411 TCTTTATGGATACTCAGGAATGGCGGAACATGCGCACAAACTGTTCGATGAAATGCCTGA 470
|||||||||||||||||||||||| || |||||||| || |||||||||||||||||||
Sbjct 421 TCTTTATGGATACTCAGGAATGGCTGAGCATGCGCATAAGTTGTTCGATGAAATGCCTGA 480
Query 471 GCTAAACTGTGAAAGAACTGTGAAGTCGTTCAATGCGCTTCTATCGGCTTATGTTAATTC 530
||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 481 GCTAAACTGTGAACGAACTGTCAAGTCGTTCAATGCGCTTTTATCGGCTTATGTTAATTC 540
Query 531 AAAGAAGCTTGACGAGGCTATG-AAGACCTTCAAGGAGTTACCAGAGAAGCTAGGTATTA 589
|| ||||||||| ||||| ||| ||| ||||||||||||| ||||||||||||||||| |
Sbjct 541 AAGGAAGCTTGATGAGGCCATGAAAG-CCTTCAAGGAGTTGCCAGAGAAGCTAGGTATCA 599
Query 590 CTCCTGATTTGGTTACTTATAATACCATGATCAAGGCACTTTGCCGTAAAGGCTCTATGG 649
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTCCTGATCTGGTTACTTATAATACCATGATCAAGGCACTTTGCCGTAAAGGCTCTATGG 659
Query 650 ATGATATATTATCTATCTTTGAGGAACTGGAGAAGAACGGGTTCGAGCCTGACTTGATCT 709
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 660 ATGATATATTATCTATCTTTGAGGAACTGGAGAAGAACGGGTTTGAGCCTGATTTGATCT 719
Query 710 CTTTCAACACTCTGTTAGAAGAGTTTTATAGGAGGGAGTTGTTTGTTGAAGGTGATAGGA 769
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 720 CTTTCAACACTCTGTTAGAAGAGTTTTATAGGAGGGAATTGTTTGTTGAAGGAGATAGGA 779
Query 770 TTTGGGATTTGATGAAATCCAAGAATCTTTCTCCTAACATTAGGAGTTATAACTCGAGAG 829
||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 780 TTTGGGATTTGATGAAATCCAAGAATCTTGCTCCCAACATTAGGAGTTATAACTCTAGAG 839
Query 830 TGAGAGGTCTTACTCGGAACAAGAAGTTCACTGATGCACTTAACTTGATTGATGTTATGA 889
|||||||||| || |||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 840 TGAGAGGTCTGACCCGGAACAAGAAGTTCACTGATGCAATTGACTTGATCAATGTTATGA 899
Query 890 AAACTGAAGGGATTTCCCCAGATGTTCATACATACAATGCTTTAATCACGGCTTACCGTG 949
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 900 AAACTGAAGGGATCTCCCCAGATGTTCATACATACAATGCTTTCATCACGGCTTACCGCG 959
Query 950 TTGATAACAACCTCGAGGAGGTTATGAAATGTTACAATGAGATGAAGGAGAAGGGTCTGA 1009
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 GTGATAACAACCTTGAGGAGGTTATGAAATGGTACAATGAGATGAAGGAGAAGGGTCTGA 1019
Query 1010 CTCCTGATACAGTGACTTACTGTATGTTAATCCCTCTTCTCTGCAAGAAAGGTGATCTTG 1069
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTCCTGATACAGTGACTTACTGTTTGTTAATCCCTCTTCTCTGCAAGAAAGGTGATCTTG 1079
Query 1070 ATAGAGCGGTTGAGGTATCCGAAGAGGCCATCAAACACAAGCTCCTGTCTCGCCCGAACA 1129
||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 ATAGAGCTGTTGAGATCTCCGAAGAAGCCATCAAACACAAGCTCCTGTCTCGCCCGAACA 1139
Query 1130 TGTACAAACCCGTGGTTGAGCGTTTGATGGGTGCAGGCAAGATTGATGAAGCAACACAGC 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGTACAAACCCGTGGTTGAGCGTTTGATGGGTGCAGGCAAGATTGATGAAGCAACACAGC 1199
Query 1190 TAGTGAAGAATGGCAAGCTACAGAGTTACTTTCGGTACCTGCCAGACTTGTCCGCTGGTA 1249
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 TAGTGAAGAATGGCAAGCTACAGAGTTACTTTCGGTACCTACCAGACTTGTCCGCTGGTA 1259
Query 1250 AGAAAAAGACCACTTCCAGTCCAGTCTCTTCAAGTGC-GAAGACCACTTCCACTCCGGTC 1308
|||| ||||||||||||||||| |||||||||||| | || || |||||||| || ||||
Sbjct 1260 AGAAGAAGACCACTTCCAGTCCGGTCTCTTCAAGTTCAGA-GATCACTTCCAGTCAGGTC 1318
Query 1309 TCTTCAAGTCCGGATACCTCTTCCTTTCTGCTCTCTTTAAGTCTGGCGGCGGACTCTTCC 1368
|||||| || ||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1319 TCTTCAGGTTCGGATACCTCTTCATTTCTGCTCTCTTTAAGTCTGGCGTCGGACTCTTCC 1378
Query 1369 AGCTCCGACTCCGACTCTTCGAG-TCCAGACTCTTCCAGCTCCGTCTCTTCG-AGTCCAG 1426
||||| | |||||||| || || ||||||| |||||| ||||||||| | || ||
Sbjct 1379 AGCTC-G-----GACTCTTCCAGCTCG-GACTCTTTCAGCTCGGTCTCTTCGGA-TC-AG 1429
Query 1427 -ACTCTTCCAGCTCCG-TCTCTTCGAGTCCAGACTCTTACAGCTCGTTCTCTTCGAGTCC 1484
||||||||||| ||| ||||||||| | | ||||||| |||| || ||||||||||||
Sbjct 1430 GACTCTTCCAGC-CCGGTCTCTTCGAATTCGGACTCTTCCAGCCCGGTCTCTTCGAGTCT 1488
Query 1485 AG-ACTCTTCCAGCTCTGTCTCTTCGAGTCTGTTCTCTTCAAGTCGGGAGAACTCTTCAA 1543
| ||||||||||| | | | |||| || | |||| | || |||||| |
Sbjct 1489 -GTACTCTTCCAGC-C---C-----G-GTCT---CT-T-CAAGCCCGGT---CTCTTCGA 1529
Query 1544 GTCCGGACTATTCCAACTCGGTCTCTTCGAGTTTGGACTATTCCGGCTCGGTCTCTTCG 1602
|| |||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 1530 GTTCGGACTATTCCAGCTCGGTCTCTTCGAGATCGGACTATTCCAGCTCGGTCTCTTCG 1588
Score = 141 bits (76), Expect = 2e-32
Identities = 220/283 (78%), Gaps = 36/283 (13%)
Strand=Plus/Plus
Query 1426 GACTCTTCCAGCTCCGTCTCTTCGAGTC-CAGACTCTTACAGCTCGTTCTCTTC-GAGTC 1483
|||||||||||||| | |||||| || | | ||||||| ||||||| ||||||| || |
Sbjct 1370 GACTCTTCCAGCTCGGACTCTTCCAG-CTCGGACTCTTTCAGCTCGGTCTCTTCGGA-T- 1426
Query 1484 CA-GACTCTTCCAGCTCTGTCTCTTCG-AGTCTGTTCTCTTCAAGTCGGGAGAACTCTTC 1541
|| |||||||||||| | ||||||||| | || | |||||| || | | | ||||||
Sbjct 1427 CAGGACTCTTCCAGCCCGGTCTCTTCGAATTC-GGACTCTTCCAG-CCCG-G-TCTCTTC 1482
Query 1542 AAGTCCGGACTATTCCAACTCGGTCTCTTCGAGTTTGGACTATTCCGGCTCGGTCTCTTC 1601
|||| | ||| ||||| | |||||||||| | | || ||||||||||
Sbjct 1483 GAGTCTGTACTCTTCCAGCCCGGTCTCTTC--------A--A-----GCCCGGTCTCTTC 1527
Query 1602 GAGTTCGGACTATTCCAGCTCGGTCT-TTCCGAG-TGCGAACTCTTCCAGCTC--T-TC- 1655
|||||||||||||||||||||||||| ||| ||| | || ||| ||||||||| | ||
Sbjct 1528 GAGTTCGGACTATTCCAGCTCGGTCTCTTC-GAGAT-CGGACTATTCCAGCTCGGTCTCT 1585
Query 1656 -C-TCTGGGTTGTTGGACGATTAAGAGTGCTTGATCTGTGTTT 1696
| ||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1586 TCGTCTGGCTTGTTTGACGATTAAGAGTGCTTGATCAGTGTTT 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5