BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13160.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478692 jgi|Araly1|478692|fgenesh2_kg.3__1393__AT3G13160.1 2047 0.0
> Ahg478692 jgi|Araly1|478692|fgenesh2_kg.3__1393__AT3G13160.1
Length=1288
Score = 2047 bits (1108), Expect = 0.0
Identities = 1209/1258 (96%), Gaps = 6/1258 (0%)
Strand=Plus/Plus
Query 61 CCGATCCaaaaaaaaGAAGAGAAAAACCTTTGCATACAGCTAAAAACGATGTCGTCTCTC 120
||||||| |||| ||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 35 CCGATCC-AAAACAAG-AGAAAAAAACCTTTGCACACAGCTAAAAACGATGTCGTCTCTC 92
Query 121 TCTCGCTTTCTCCTTCGTGGCAACTTCAGCTTCAGCACCCACACGAATCGCCGCTTCTTC 180
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 93 TCTCGCTTTCTCCTTCGTGGCAACTTCAGCTTCAGTACCCCCACGAATCGCCGCTTCTTC 152
Query 181 TCCGCCGTTACCGCTGCTGCAGCCACACCCTCGCCACCCAA-ACCGTCCCTCATCACCCT 239
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct 153 TCCGCCGTTACCGCTGCTGCAGCCACACCCTCGCCA-CCAAGACCATCCCTCATCACCCT 211
Query 240 CGTAAATGACGAACGCGACCCCAAATTCATCACGGAGAAGTTCAAGAAAGCCTGCCAAGC 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 212 CGTAAATGACGAACGCGACCCCAAATTCATCATGGAGAAGTTCAAGAAAGCCTGCCAAGC 271
Query 300 AGAGTGGTTCCGGAAGAATATAGCTGTCTATGAG-AGAACCGTTCGCCGTCTCGCCGCAG 358
|||||||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct 272 AGAGTGGTTCCGGAAGAATATAGCCGTCTATGAGAAG-ACCGTTCGCCGTCTCGCTGCAG 330
Query 359 CCAAGAAGTTTGAGTGGGTCGAGGAGATCCTGGAGGAGCAGAACAAGTATCCAAACATGT 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 331 CCAAGAAGTTTGAGTGGGTCGAGGAGATCCTGGAGGAGCAGAATAAGTATCCAAACATGT 390
Query 419 CAAAGGAAGGATTCGTGGCGAGGATTATCAATCTCTATGGACGAGTCGGTATGTTTGAGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 CAAAGGAAGGATTCGTGGCGAGGATTATCAATCTCTATGGACGAGTCGGTATGTTTGAGA 450
Query 479 ATGCACAGAAAGTGTTCGACGAAATGCCTGAGAGAAACTGCAAGAGAACAGCGTTGTCTT 538
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 451 ATGCACAGAAAGTGTTCGACGAAATGCCTGACAGAAACTGCAAGAGAACAGTGTTGTCTT 510
Query 539 TCAACGCATTACTGAATGCCTGTGTGAACTCCAAGAAGTTTGATTTGGTTGAAGGTATCT 598
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 511 TCAACGCATTACTGAATGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTTGAAGGTATCT 570
Query 599 TCAAGGAGTTGCCAGGTAAGCTCTCGATTGAACCAGATGTTGCATCTTACAATACTTTGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TCAAGGAGTTGCCAGGTAAGCTCTCGATTGAACCAGATGTTGCATCTTACAATACTTTGA 630
Query 659 TCAAGGGATTGTGTGGAAAGGGTTCCTTCACTGAAGCTGTTGCGTTGATTGATGAGATTG 718
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 631 TCAAGGGATTGTGTGGAAAAGGTTCCTTCACTGAAGCTGTTGCATTGATTGATGAGATTG 690
Query 719 AGAACAAGGGTTTGAAACCTGATCATATCACCTTCAATATACTTTTACATGAGTCGTATA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 AGAACAAGGGTTTGAAACCTGATCATATCACCTTCAATATACTTTTACATGAGTCGTATA 750
Query 779 CAAAAGGGAAGTTTGAGGAAGGAGAACAGATATGGGCTAGAATGGTAGAGAAGAATGTTA 838
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 751 CAAAAGGGAAGTTTGAGGAAGGAGAAAAGATATGGGCTAGAATGGTAGAGAAAAATGTTA 810
Query 839 AGCGAGACATCCGTAGTTACAATGCTCGGTTGTTAGGACTAGCCATGGAGAATAAATCAG 898
||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 811 AGCAAGACATCCGTAGTTACAATGCGCGGTTGTTAGGACTAGCCATGGAGACGAAATCAG 870
Query 899 AAGAGATGGTTAGTCTCTTTGACAAACTTAAGGGTAATGAGCTCAAACCTGATGTTTTCA 958
||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||| ||||
Sbjct 871 AAGAGATGGTTAGTCTCTTTGACGAACTTAAGGTTAATGGGATCAAACCTGATGTATTCA 930
Query 959 CATTCACTGCCATGATTAAAGGATTTGTCAGTGAAGGAAAATTAGATGAAGCCATAACGT 1018
|||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||||||| |
Sbjct 931 CATTCACTGCTATGATAAAAGGATTTGTCGGTGAAGGAAGATTGGATGAAGCCATAACCT 990
Query 1019 GGTACAAGGAAATCGAGAAGAATGGTTGTCGCCCGTTGAAATTTGTCTTTAACTCATTGC 1078
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 991 GGTACAAGGAAATCGAGAAGAATGGTTGTCGCCCGATGAAATTTGTCTTTAACTCATTGC 1050
Query 1079 TTCCTGCAATATGTAAGGCGGGCGATTTAGAGTCTGCTTATGAGCTCTGCAAGGAAATAT 1138
||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||
Sbjct 1051 TTCCTGCAATATGTAAGGCAGGCGATTTGGAGTATGCTTATGAGCTCTGCAAGGAGATAT 1110
Query 1139 TTGCTAAGCGTCTGCTAGTCGATGAGGCTGTCCTGCAGGAGGTAGTTGATGCATTGGTGA 1198
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTGTTAAGCGTCTGCTAGTCGATGAGGCTGTCCTGCAGGAGGTAGTTGATGCATTGGTGA 1170
Query 1199 AAGGGTCCAAGCAAGACGAAGCTGAAGAGATTGTCGAGCTAGCAAAGACGAATGACTATT 1258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1171 AAGGGTCCAAGCAAGACGAAGCTGAAGAGATTGTCGAGCTCGCAAAGACGAATGACTATT 1230
Query 1259 TGCAGTGCAAGCTTCGTCTCTTTCCCAAAGAGTAGTTAATTGGCAAGGCTTATTGACT 1316
||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 1231 TGCAGTGCAAGCTTCGTCTCTCTCCCAAAGAGTAGTTCATTGGCAAGGCTTATTAACT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5