BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13170.1 Length=1089 Score E Sequences producing significant alignments: (Bits) Value Ahg904212 jgi|Araly1|904212|Al_scaffold_0003_1340 1779 0.0 > Ahg904212 jgi|Araly1|904212|Al_scaffold_0003_1340 Length=1089 Score = 1779 bits (963), Expect = 0.0 Identities = 1049/1091 (96%), Gaps = 4/1091 (0%) Strand=Plus/Plus Query 1 ATGGAGGGAAAA-TTCGCTATTTCAGAATCGACTAATTTGCTTCAAAGGATCAAAGATTT 59 |||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGGGAAAATTTC-CGATTTCAGAAACGACTAATTTGCTTCAAAGGATCAAAGATTT 59 Query 60 TACTCAATCGGTCGTTGTAGATCTGGCTGAAGGAAGATCTCCAAAAATTTCCATCAATCA 119 ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TACTCGATCGATCGTTGAAGATCTGGCTGAAGGAAGATCTCCAAAAATTTCCATCAATCG 119 Query 120 ATTCAGGAACTATTGCATGAATCCAGAAGCTGATTGCTTATGCAGCTCTGATAAACCAAA 179 |||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| Sbjct 120 ATTCAGGAACTATTGCATCAATCCAGAAGCGGATTGCTTATGCAGCTCTGATACACCAAA 179 Query 180 GGGTCAGGAAATTTTCACTCTTAAGAAGG-AACCACAAACCTACAGAATCGATATGTTGC 238 ||||||||||||| |||||||| || ||| |||| ||||||||||||||||||||||||| Sbjct 180 GGGTCAGGAAATTCTCACTCTTGAG-AGGAAACCCCAAACCTACAGAATCGATATGTTGC 238 Query 239 TAAGAGTATTGTTGATAGTCCAACAACTTCTGCAAGAAAATAGACATGCTTCGAAAAGAG 298 |||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| Sbjct 239 TAAGAGTATTGTTGATTGTCCAACAACTTCTTCAAGAAAATAGACATGCATCCAAAAGAG 298 Query 299 ATATCTACTACATGCATCCATCAGCTTTCAAAGCACAATCCATTGTGGACCGTGCAATTG 358 ||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| Sbjct 299 ATATCTACTACATGCATCCTTCAGCATTCAAAGCACAATCCATTGTGGACCGCGCCATTG 358 Query 359 GTGATATATGCATTCTTTTTCAGTGTAGTCGGTACAACTTGAATGTGGTTTCTGTTGGAA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GTGATATATGCATTCTTTTTCAGTGTAGTCGGTACAACTTGAATGTGGTTTCTGTTGGAA 418 Query 419 ACGGGTTGGTGATGGGTTGGTTAAAATTTAGGGAAGCTGGAAGGAAATTTGATTGTTTAA 478 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 419 ACGGGTTGGTGATGTGTTGGTTAAAATTTAGGGAAGCTGGAAGGAAGTTTGATTGTTTAA 478 Query 479 ACAGCTTGAACACTGCATATCCCGTTCCTGTTCTTGTAGAGGAAGTCGAAGATATTGTTA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ACAGCTTGAACACTGCATATCCCGTTCCTGTTCTTGTAGAGGAAGTCGAAGATATTGTTA 538 Query 539 GCTTAGCTGAGTACATACTGGTTGTGGAAAAAGAAACAGTATTCCAGCGTTTAGCAAATG 598 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GCTTAGCAGAGTATATACTGGTTGTGGAAAAAGAAACAGTATTCCAGCGTTTAGCAAATG 598 Query 599 ACATGTTTTGCAAGACGAACCGCTGCATTGTTATCACAGGAAGAGGATATCCAGATGTCT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 ACATGTTTTGCAAGACGAACCGCTGCATTGTTATCACAGGAAGAGGATATCCAGATGTCT 658 Query 659 CAACAAGAAGGTTCTTGCGACTCCTGATGGAGAAGTTGCATCTACCTGTGCATTGTCTAG 718 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 659 CAACAAGAAGGTTCTTGCGACTCCTCATGGAGAAGTTGCATCTACCTGTGCATTGTCTAG 718 Query 719 TCGACTGTGATCCATATGGCTTTGAGATCCTAGCCACATACCGTTTTGGCTCCATGCAAA 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TCGACTGTGATCCATATGGCTTTGAGATCCTAGCCACATACCGTTTTGGCTCCATGCAAA 778 Query 779 TGGCCTATGATATTGAATCATTACGAGCACCAGATATGAAATGGTTGGGAGCTTTTCCTT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TGGCCTATGATATTGAATCATTACGAGCACCAGATATGAAATGGTTGGGAGCTTTTCCTT 838 Query 839 CAGACTCTGAGGTATATAGTGTTCCCAAACAGTGTCTTTTGCCACTGACAGAAGAAGATA 898 ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 839 CAGACTCTGAGATATACAGTGTTCCCAAACAGTGTCTTTTGCCTTTGACAGAAGAAGATA 898 Query 899 AGAAAAGAACTGAAGCAATGTTGCTTAGATGCTACCTGAAGCGTGAAATGCCACAATGGA 958 ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| Sbjct 899 AGAAAAGAACTGAAGCATTGTTGCTTAGATGCTACCTGAAGCGTGAAATGCCGCGATGGA 958 Query 959 GGTTGGAACTTGAAACGATGTTGAAAAGAGGGGTCAAGTTTGAGATCGAAGCACTCTCAG 1018 |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| Sbjct 959 GGTTGGAACTTGAAACGATGCTGAAAAGAGGAGTGAAGTTTGAGATCGAAGCACTCTCAG 1018 Query 1019 TTCACTCACTGTCCTTTTTGTCAGAGGTATATATTCCTTCTAAGATTCGTCGTGAAGTAA 1078 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1019 TTCACTCACTGTCCTTTTTGTCAGAGGTTTATATTCCTTCTAAGATTCGTCGTGAGGTAA 1078 Query 1079 GCTCTCCTTGA 1089 |||| |||||| Sbjct 1079 GCTCACCTTGA 1089 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40562783688 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5