BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13175.1
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478694 jgi|Araly1|478694|fgenesh2_kg.3__1395__AT3G13175.1 739 0.0
> Ahg478694 jgi|Araly1|478694|fgenesh2_kg.3__1395__AT3G13175.1
Length=509
Score = 739 bits (400), Expect = 0.0
Identities = 488/527 (93%), Gaps = 19/527 (4%)
Strand=Plus/Plus
Query 27 GAGAGAGAGTTAGCATTGTACTATCTCTCTTTTAGATATATCTCTATCTCTCTTCACTCC 86
|||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 1 GAGAGAGAGTTAGCATTG-A--ATCTCTCTTTTAG--ATATCTCTATCTCTCTTCACTCT 55
Query 87 ATCTTTCTCGTGTTAACACAACAGTC-ACAGACTCACAGATCTTTGTCGGTGATCGGAGA 145
||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||
Sbjct 56 ATCTTTCTCGTGTTAACAC-A-AGTCAACAG--TCACAGATCTTTGTCGGTGATCGGAGA 111
Query 146 TGGAGTTCCGGGAGAAGCTTTTGAAGTTCAAGTTGCAAATCGTGTTTGCCTTTGTTTTAT 205
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 112 TGGAGTTCCGGGAGAAGCTTTTGAAGTTTAAGTTCCAAATCGTCATTGCCTTTGTTTTAT 171
Query 206 CTCTCCTCACCGTAGCTCTCGTCGCTTATTCTCCCGGTTTCCTCACCGTTCTATCTTACT 265
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 172 CTCTCCTCACCGTAGCCCTCGTCACTTATTCTCCCGGTTTCCTCACCGTTTTATCTTACT 231
Query 266 TCTGGCCACTTTTTCTCTCCACGGCTCTCTTTCTCGCTGCCGTTTTCTTCTTCGCACGCA 325
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 232 TCTGGCCACTTTTTCTCTCCACCGCTCTCTTTCTCGCCGCTGTTTTCTTCTTCGCACGCA 291
Query 326 CCTCCGATCTCCCGGTTTCGTCTACCATCATCCCAGGCGAAGGCGCAGGCTTAAAAGTGG 385
||||||| || |||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 292 CCTCCGACCTTCCGGCTTCATCTACCATCATCCCAGGCGAAGGCGCCGGCTTAAAAGTGG 351
Query 386 CGGCGGAAGGGATTCTTGACTATGTCGTCGGCGGACAACACGAAGACATTCTCTTTGATA 445
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGGCCGAAGGGATTCTTGACTATGTCGTCGGCGGACAACACGAAGACATTCTCTTTGATA 411
Query 446 GCTTCACCAAACTTGACTAAGTATGAGACCTCTCTGTTCTTAATTCCTTAAGTATTTCCG 505
|||||||||||||||||||||||||||| |||||| | ||| || | |||||||||
Sbjct 412 GCTTCACCAAACTTGACTAAGTATGAGATCTCTCT-TCCTT--TT----A-GTATTTCCG 463
Query 506 TTAATTAGTTGTTCCTTTTTTAATACTAGAGAAAATAAAATTACAAA 552
|||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 464 TTAATTAGTTGTTCCTTTTT-AATACTAGAGAAAACAAAATTACAAA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21939463675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5