BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13180.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478695 jgi|Araly1|478695|fgenesh2_kg.3__1396__AT3G13180.1 2527 0.0
> Ahg478695 jgi|Araly1|478695|fgenesh2_kg.3__1396__AT3G13180.1
Length=1593
Score = 2527 bits (1368), Expect = 0.0
Identities = 1519/1593 (95%), Gaps = 6/1593 (0%)
Strand=Plus/Plus
Query 38 GAGCATCCATGGCGCAATTGCTCTCATTTCGCGTTTATCTGTCTGCTGAAACGCAGAAAG 97
||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 GAGTATCCATGGCGCAATTGCTCTCATTTCGCGTGTATCTATCTGCTGAAACGCAGAAAG 60
Query 98 CTTCTCCAGGGTCGTTTAAGCGAACCCAAAAGACTCGAAAACCATTTTCGCCTGATAGAA 157
||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 61 CTTCTCCAGGGTCTTTTAAGCGAACCCCAAAGACTCGAAAACCCTTTTCGCAGGATAGAA 120
Query 158 GAGGTCCGGTGGCTCCGTCGCGGAAATCTCAGAATCTGAATTTGGAAGTTTCTCCACATA 217
||||||||| |||||||||| |||| | ||||||||||||||||| |||||||||||||
Sbjct 121 GAGGTCCGGGGGCTCCGTCGTGGAAGCCCCAGAATCTGAATTTGGAGGTTTCTCCACATA 180
Query 218 GAGCTGTATCTGCAGTCAGATTGATGAGAATTGAGTACGGTGGTGCTTTTGCTGATCTTT 277
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GAGCTGTATCTGCAGTCAGATTGATGAGAATTGAGTACGGTGGTGCGTTTGCTGATCTTC 240
Query 278 TGAATGAGAAAGGAAAAGGGTCTGGGAGCAATGAGATGAGTTATGTTGAAAGGACTATCG 337
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 241 TGAATGAGAAAGGGAAAGGGTCTGGGAGCAATGAGATGAGTTATGTTGAGAGGACAATCG 300
Query 338 GTTTTCGGACTCGCGATTTGGATGACCGAGATCTTAGAC----T-G-GTTACAGATGTTG 391
|||||||||||||||||||||||||||| |||||||||| | | ||||| |||||||
Sbjct 301 GTTTTCGGACTCGCGATTTGGATGACCGGGATCTTAGACTGGTTAGTGTTACTGATGTTG 360
Query 392 TTGGAGGAACAATACGGTGGAGGAGGTATCTTGATCATTTGATTGGTTCCCTTTGCCACA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGGAGGAACAATACGGTGGAGGAGGTATCTTGATCATTTGATTGGTTCCCTTTGCCACA 420
Query 452 ACGAAAGAACATTTCGAAATATGGAACCTCTTCTATTGCAGATTCTCCGCATTGGTGTAT 511
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACGAAAGAACATTTCGTAATATGGAACCTCTTCTATTGCAGATTCTCCGCATTGGTGTAT 480
Query 512 ATGAGATCATTAAGCGTGATATGCCGCCATATGCTGTTGTTGATGAGAACGTAAGGCTTG 571
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 ATGAGATCATTAAGCGTGATATGCCGCCATATGCTGTTGTTGATGAGAACGTCAGGCTTG 540
Query 572 CAAAGGTTGCCCTCAGACCTGGTGCTGGAGATTTTGTCAATGGGATTCTTCGTAAACTAG 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 CAAAGGTTGCCCTCAGACCTGGTGCTGGAGATTTTGTCAATGGGATTCTTCGTAAGCTAG 600
Query 632 TCTCTCTTAAGGAAAAAGATGCCCTTCCATTACCCAAAGTGGAAGGGGATGATCGTGCAC 691
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TCTCTCTTAAGGAAAAAGACGCCCTTCCATTACCCAGAGTGGAAGGGGATGATCGTGCAC 660
Query 692 AGGCACGTGCACTTGCTACTCTTCATTCACATCCCGTTTGGATGGTTAGACGATGGGTAA 751
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 661 AAGCACGTGCACTTGCTACTCTTCATTCACATCCTGTTTGGATGGTTAGGCGATGGGTAA 720
Query 752 AGTATCTTGGGTTGGATGAAGCCACAAAGCTAATGATATGGAATAACAATGATCCTGGAT 811
||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 721 AGTATCTTGGGTTGGATGAAGCCACAAAGCTGATGACATGGAACAACAATGATCCTGGAT 780
Query 812 TTAGCTTAAGGGCCAATACGGGAAGGGACATTACAAGAGCAGACCTTGTGGAGCGTCTAA 871
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 781 TTAGCTTAAGGGCCAATACGGGAAGGGGCATTGCAAGATCAGACCTTGTGGAGCGTCTAA 840
Query 872 ACAGTTTAAAGGTTCCACACGAGCTATCCTTACATTTGGAGGAATTTGTCCGCATCAAAA 931
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 841 ACAGTTTAAAGGTTCCACACGAACTGTCCTTACATTTGGAGGAATTTGTCCGCATCAAAA 900
Query 932 CAGGCTTGCAGACCGTTGTGCAAGCTGGTTTACTCAAAGAAGGCATCTGTTCTGTTCAGG 991
|||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 901 CAGGCTTGCAGATCGTTGTGCAAGCTGGTTTACTGAAAGAAGGCATCTGTTCAGTTCAGG 960
Query 992 ACGAGAGTGCAGGACTAATAGTCTCAGTGGTGAAACCTCAGCCAGGCGAGAGGATAATGG 1051
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATGAAAGTGCAGGACTAATAGTCTCAGTGGTGAAACCTCAGCCAGGCGAGAGGATAATGG 1020
Query 1052 ATGCATGTGCTGCTCCTGGAGGAAAGACCCTATTCATGGCATCTTGCTTGAAAGGCCAAG 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATGCATGTGCTGCTCCTGGAGGAAAGACCCTATTCATGGCATCTTGCTTGAAAGGCCAAG 1080
Query 1112 GTATGATATATGCTATGGATGTGAATGAAGGACGGCTAAGAATTCTTGGTGAGACAGCAA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1081 GTATGATATATGCTATGGATGTGAATGAAGGACGGCTAAGAATTCTTGGTGAGACTGCAA 1140
Query 1172 AATCACACCAAGTTGATGGACTTATCACAACCATTCATTCTGATCTTCGTGTCTTTGCTG 1231
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1141 AATCGCACCAAGTTGATGGACTTATCACAACCATTCATTCCGATCTTCGTGTCTTTGCTG 1200
Query 1232 AAACCAATGAAGTACAATATGACAAAGTTTTGCTTGATGCCCCGTGTTCTGGACTCGGCG 1291
|||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1201 AAACCAGTGAGGTACAATATGACAAAATTTTGCTAGATGCCCCGTGTTCTGGACTCGGCG 1260
Query 1292 TCCTCTCCAAGAGAGCGGATTTGCGCTGGAACCGTAAACTTGAGGACATGTTAGAGCTCA 1351
|||||||||||||||| || ||||| |||||||||||||||||||||||| |||||||||
Sbjct 1261 TCCTCTCCAAGAGAGCAGACTTGCGTTGGAACCGTAAACTTGAGGACATGGTAGAGCTCA 1320
Query 1352 CTAAACTGCAGGATGAGCTTCTTGATTCTGCCTCCAAACTGGTGAAGCACGGTGGGGTGT 1411
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1321 CAAAACTGCAGGATGATCTTCTTGATTCTGCCTCCAAACTGGTGAAGCACGGTGGGGTCT 1380
Query 1412 TGGTATACAGTACTTGCTCCATAGACCCCGAGGAAAATGAAGGAAGGGTCGAAGCATTTC 1471
|| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1381 TGATATACAGTACTTGCTCTATAGACCCTGAAGAAAATGAAGGAAGGGTCGAAGCATTTC 1440
Query 1472 TCTTAAGACATCCTGAATTCACCATAGATCCAGTAACCAGTTTTGTACCGTCGAGTTTTG 1531
|| ||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 1441 TCGAAAGACATCCTGTATTCTCCATAGATCCAGTAACCAGTTTCGTACCGTCAAGTTTTG 1500
Query 1532 TAACCTCACAAGGCTTCTTTTTATCAAACCCAGTGAAACACTCACTAGATGGAGCATTTG 1591
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 TAACCTCGCAAGGCTTCTTTTTATCAAACCCAGTGAAACACTCATTAGATGGAGCATTTG 1560
Query 1592 CAGCTCGTCTGGTTCGAGCCTTGTGACGTTAAA 1624
|||||||||||||||||||||||||||||||||
Sbjct 1561 CAGCTCGTCTGGTTCGAGCCTTGTGACGTTAAA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5