BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13190.1 Length=1395 Score E Sequences producing significant alignments: (Bits) Value Ahg478696 jgi|Araly1|478696|fgenesh2_kg.3__1397__AT3G13190.1 1794 0.0 > Ahg478696 jgi|Araly1|478696|fgenesh2_kg.3__1397__AT3G13190.1 Length=1323 Score = 1794 bits (971), Expect = 0.0 Identities = 1218/1333 (91%), Gaps = 34/1333 (3%) Strand=Plus/Plus Query 9 TCTTCTTCCCCAGTTTTCCTAATTTGGTAACCCTTGTTGCAGGCGGCTGTTGCTGATCGG 68 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 1 TCTTCTTCCCCAGTTTTCTTAATTTGGTAACCCTTGTTGCAGGCGGCTGTTGCTGCTCGG 60 Query 69 GTCTCTCTTCTCCA-TTTTCCGATTAG--A---TTAACTAGGAAGTCATGTGGTTCAGAA 122 ||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||| Sbjct 61 GTCTCTCGTCTCCATTTTTCCGATTAGTAAGCGTTAACTAGGAAGTCATGTGGTTCAGAA 120 Query 123 TAGGCAATTCACGTGCAATGACAGAGATAAAGTaaaaaaaGAAAAGTATAGAGGTACCCG 182 ||| || |||||||||| ||||||||||||||||||||||||||||||| | | ||||| Sbjct 121 TAGTCATTTCACGTGCAGCGACAGAGATAAAGTAAAAAAAGAAAAGTATA-AAG-ACCCG 178 Query 183 TGACCTCTTTCTTACACGAACGTGACACGTGAGCATGATTGTACATTAGAGACGAAG--- 239 |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 179 TGACCTCTCTCTTGCACGGACGTGACACGTGAGCATGATTGTACATTAGAGACGAAGCTT 238 Query 240 C-TGCCCTCTTTCCTCCTTCC--A--T----TACAGTGTTCTTAAGTTTACGAGTGAATG 290 | ||||||||||||||||||| | | |||||||||||||||||| ||||| ||| Sbjct 239 CGTGCCCTCTTTCCTCCTTCCATAGTTCCACTACAGTGTTCTTAAGTTTGGGAGTGGATG 298 Query 291 GCTACTTTTCATACCGTTAGAGATGCGGTGAAGCTCTTTGACGCTGGTATTTCTGGAGGA 350 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 299 GCTACTTTTCATACCGTTAAAGATGCGGTGAAGCTCTTTGACGCTGGTATTTCTGGAGGA 358 Query 351 AAACATC-TCAACAAAG-GACAAGAAGAGGGAGTGTTGGTGGAGGAGACAAATCTCTGTC 408 ||||| | ||||| ||| |||||| | ||||||||||||||||||||||||||||||||| Sbjct 359 AAACA-CATCAAC-AAGAGACAAGGACAGGGAGTGTTGGTGGAGGAGACAAATCTCTGTC 416 Query 409 TCTGGAATAAAGAGGTTAACAAGTTGAAAGAAAAGATAAAGAATGCTGTGAAGACCAAGA 468 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 417 CCTGGTCTAAAGAGGTTAACAAGTTGAAAGAAAAGATAAAGAATGCTGAGAAGACCAAGA 476 Query 469 TTGAGGCTTTGTTAGAACTGGAGGAAGCTAAGAAAACGGTTGAGCAACTCAGTCAGGAGT 528 |||||||||||||||| || |||||||||||||| ||||||||||| ||||||||| || Sbjct 477 TTGAGGCTTTGTTAGAGCTTGAGGAAGCTAAGAACACGGTTGAGCATCTCAGTCAGAAGC 536 Query 529 TGGGAATTAAGCGGAACATGATTAATGATGAGAAAGATTTAGATTTGAGTAGTAGTGTAA 588 |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 537 TGGGAATTAAGCAGACCATGACAAATGATGAGAAAGATTTAGATTTGAGTAGTAGTGTAA 596 Query 589 GAGTTGTGACTTCAGAGCTAGGTGTTGCTAAGGAATCGATTCATAGAGTAGCTGAAGAGG 648 ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 597 GAGTTGTGACTTCTGAGCTATGTGTTGCAAAGGAATCGATTCATAGAGTAGCTGAAGAGG 656 Query 649 AGAGTGAGCTGTGTATGTTAATGGAGTCTCTTAAGCTCGAGCTTCAAAACGTGGAGAAAG 708 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 657 AGAGTGAATTGTGTATGTTAATGGAATCTCTGAAGCTCGAGCTTCAAAACGTGGAGAAAG 716 Query 709 CACATTCAGAGCTTAAAGAGATTGAGCAAAGAGAGAGGGATCAT-CAAGCCATTGAAGAT 767 |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| Sbjct 717 AACATTCAGAGCTTAAAGAGATTGAGCAAAGAGAGAGGGAT-GTAGAAGCCATTGAGGAT 775 Query 768 C-TGAAGAAGGAAACAAAAGATGCAAAAACCCAACTCTCGTTGTTAGAAGAAGAGCTCAA 826 | || | |||||||| |||| |||||| | |||||||| ||||||||||||||||||| Sbjct 776 CTTG-ATAAGGAAACCAAAGCTGCAAAGGCAGAACTCTCGCTGTTAGAAGAAGAGCTCAA 834 Query 827 GATTGCTGTTTTTGAAGCTCAAGAAGCAAAAGATGCAGAGGAACACGCCAGGGAACGGCT 886 ||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 835 GATTGCTCTTTTCGAGGCTCGAGAAGCAAAAGATGCAGAGGAACACGCCAGGGAACGGCT 894 Query 887 AAATGTTGCAGTTTTAGAATCTGATTTCAGATCATTAGCTGTGGTGAAAGAAAGTGCTGC 946 ||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||| Sbjct 895 AAATGTTGCAGTTTTAGAATCTGATTTCAGATCATCAGTTGAGGTGAAAGAAAGTGGTGC 954 Query 947 TGAAGAATTAACTGAGACAGAAGCTTTAAGAGCTTGCAGAGATGAAACACTCAAGACATT 1006 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 955 TGAAGAATTAACTGAGACAGAAGCTTTAAGAGCTTGCAGAGACGAAACACTCAAGACACT 1014 Query 1007 AGAGATGAGTGAGAGAGAAATTGAAGATATAAAAGCTGCAACACAAGATGCTTTGAAGAA 1066 ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1015 AGAAATGAGTGAGAGAGAGATTGAAGATATAAAAGCTGCAACACAAGATGCGTTGAAGAA 1074 Query 1067 AGCTGAGATGGCTCAAGAAGCTACAATTGTGGTGGATGTTGAGCTGAAACGACGGCGTAA 1126 ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||| Sbjct 1075 AGCTGAGATGGCTCAAGAAGCTACAATTGCGGTGGATGTAGAGCTTAAACGACGGTGTAA 1134 Query 1127 AGCAGCGAGTAGGATCTTGGCAGAATCCAAAATGTGTGCCAAATCTACCAAGGAAGTGC- 1185 ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| | Sbjct 1135 AGCAGCGAGTAGGATTTTGGCAGAATCCAAAATGTGTGCCAAATCAACAAAGGAAGT-CA 1193 Query 1186 TCAAGTCAAAACCAAGATCATCGTCAAAAGAAGGTTGCCTGGTCAAGTGTTAGAAGAATC 1245 |||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 1194 TCAAGTCAAAACCAAGATCAGCTTCAAAAGAAGGTTGTTTGGTCAAGTGTTAGAAGAATC 1253 Query 1246 TTGGTCAGAGTTGTAATTGTGAAAATCTGTAGAACTTCA-ATAACTAGAAGAAGTGTCAC 1304 ||||| ||||||||||||||||||||| | ||| | ||||||||||||| || ||| Sbjct 1254 TTGGTTTCTTTTGTAATTGTGAAAATCTGTA-A-CTT-ATATAACTAGAAGAAATGCCAC 1310 Query 1305 TTTGTTGGTTGTG 1317 ||||||||||||| Sbjct 1311 TTTGTTGGTTGTG 1323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52145545405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5