BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13190.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478696 jgi|Araly1|478696|fgenesh2_kg.3__1397__AT3G13190.1 1794 0.0
> Ahg478696 jgi|Araly1|478696|fgenesh2_kg.3__1397__AT3G13190.1
Length=1323
Score = 1794 bits (971), Expect = 0.0
Identities = 1218/1333 (91%), Gaps = 34/1333 (3%)
Strand=Plus/Plus
Query 9 TCTTCTTCCCCAGTTTTCCTAATTTGGTAACCCTTGTTGCAGGCGGCTGTTGCTGATCGG 68
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TCTTCTTCCCCAGTTTTCTTAATTTGGTAACCCTTGTTGCAGGCGGCTGTTGCTGCTCGG 60
Query 69 GTCTCTCTTCTCCA-TTTTCCGATTAG--A---TTAACTAGGAAGTCATGTGGTTCAGAA 122
||||||| |||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 61 GTCTCTCGTCTCCATTTTTCCGATTAGTAAGCGTTAACTAGGAAGTCATGTGGTTCAGAA 120
Query 123 TAGGCAATTCACGTGCAATGACAGAGATAAAGTaaaaaaaGAAAAGTATAGAGGTACCCG 182
||| || |||||||||| ||||||||||||||||||||||||||||||| | | |||||
Sbjct 121 TAGTCATTTCACGTGCAGCGACAGAGATAAAGTAAAAAAAGAAAAGTATA-AAG-ACCCG 178
Query 183 TGACCTCTTTCTTACACGAACGTGACACGTGAGCATGATTGTACATTAGAGACGAAG--- 239
|||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGACCTCTCTCTTGCACGGACGTGACACGTGAGCATGATTGTACATTAGAGACGAAGCTT 238
Query 240 C-TGCCCTCTTTCCTCCTTCC--A--T----TACAGTGTTCTTAAGTTTACGAGTGAATG 290
| ||||||||||||||||||| | | |||||||||||||||||| ||||| |||
Sbjct 239 CGTGCCCTCTTTCCTCCTTCCATAGTTCCACTACAGTGTTCTTAAGTTTGGGAGTGGATG 298
Query 291 GCTACTTTTCATACCGTTAGAGATGCGGTGAAGCTCTTTGACGCTGGTATTTCTGGAGGA 350
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCTACTTTTCATACCGTTAAAGATGCGGTGAAGCTCTTTGACGCTGGTATTTCTGGAGGA 358
Query 351 AAACATC-TCAACAAAG-GACAAGAAGAGGGAGTGTTGGTGGAGGAGACAAATCTCTGTC 408
||||| | ||||| ||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 359 AAACA-CATCAAC-AAGAGACAAGGACAGGGAGTGTTGGTGGAGGAGACAAATCTCTGTC 416
Query 409 TCTGGAATAAAGAGGTTAACAAGTTGAAAGAAAAGATAAAGAATGCTGTGAAGACCAAGA 468
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 CCTGGTCTAAAGAGGTTAACAAGTTGAAAGAAAAGATAAAGAATGCTGAGAAGACCAAGA 476
Query 469 TTGAGGCTTTGTTAGAACTGGAGGAAGCTAAGAAAACGGTTGAGCAACTCAGTCAGGAGT 528
|||||||||||||||| || |||||||||||||| ||||||||||| ||||||||| ||
Sbjct 477 TTGAGGCTTTGTTAGAGCTTGAGGAAGCTAAGAACACGGTTGAGCATCTCAGTCAGAAGC 536
Query 529 TGGGAATTAAGCGGAACATGATTAATGATGAGAAAGATTTAGATTTGAGTAGTAGTGTAA 588
|||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGGAATTAAGCAGACCATGACAAATGATGAGAAAGATTTAGATTTGAGTAGTAGTGTAA 596
Query 589 GAGTTGTGACTTCAGAGCTAGGTGTTGCTAAGGAATCGATTCATAGAGTAGCTGAAGAGG 648
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 597 GAGTTGTGACTTCTGAGCTATGTGTTGCAAAGGAATCGATTCATAGAGTAGCTGAAGAGG 656
Query 649 AGAGTGAGCTGTGTATGTTAATGGAGTCTCTTAAGCTCGAGCTTCAAAACGTGGAGAAAG 708
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 657 AGAGTGAATTGTGTATGTTAATGGAATCTCTGAAGCTCGAGCTTCAAAACGTGGAGAAAG 716
Query 709 CACATTCAGAGCTTAAAGAGATTGAGCAAAGAGAGAGGGATCAT-CAAGCCATTGAAGAT 767
|||||||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 717 AACATTCAGAGCTTAAAGAGATTGAGCAAAGAGAGAGGGAT-GTAGAAGCCATTGAGGAT 775
Query 768 C-TGAAGAAGGAAACAAAAGATGCAAAAACCCAACTCTCGTTGTTAGAAGAAGAGCTCAA 826
| || | |||||||| |||| |||||| | |||||||| |||||||||||||||||||
Sbjct 776 CTTG-ATAAGGAAACCAAAGCTGCAAAGGCAGAACTCTCGCTGTTAGAAGAAGAGCTCAA 834
Query 827 GATTGCTGTTTTTGAAGCTCAAGAAGCAAAAGATGCAGAGGAACACGCCAGGGAACGGCT 886
||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 835 GATTGCTCTTTTCGAGGCTCGAGAAGCAAAAGATGCAGAGGAACACGCCAGGGAACGGCT 894
Query 887 AAATGTTGCAGTTTTAGAATCTGATTTCAGATCATTAGCTGTGGTGAAAGAAAGTGCTGC 946
||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||
Sbjct 895 AAATGTTGCAGTTTTAGAATCTGATTTCAGATCATCAGTTGAGGTGAAAGAAAGTGGTGC 954
Query 947 TGAAGAATTAACTGAGACAGAAGCTTTAAGAGCTTGCAGAGATGAAACACTCAAGACATT 1006
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 955 TGAAGAATTAACTGAGACAGAAGCTTTAAGAGCTTGCAGAGACGAAACACTCAAGACACT 1014
Query 1007 AGAGATGAGTGAGAGAGAAATTGAAGATATAAAAGCTGCAACACAAGATGCTTTGAAGAA 1066
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1015 AGAAATGAGTGAGAGAGAGATTGAAGATATAAAAGCTGCAACACAAGATGCGTTGAAGAA 1074
Query 1067 AGCTGAGATGGCTCAAGAAGCTACAATTGTGGTGGATGTTGAGCTGAAACGACGGCGTAA 1126
||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||
Sbjct 1075 AGCTGAGATGGCTCAAGAAGCTACAATTGCGGTGGATGTAGAGCTTAAACGACGGTGTAA 1134
Query 1127 AGCAGCGAGTAGGATCTTGGCAGAATCCAAAATGTGTGCCAAATCTACCAAGGAAGTGC- 1185
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1135 AGCAGCGAGTAGGATTTTGGCAGAATCCAAAATGTGTGCCAAATCAACAAAGGAAGT-CA 1193
Query 1186 TCAAGTCAAAACCAAGATCATCGTCAAAAGAAGGTTGCCTGGTCAAGTGTTAGAAGAATC 1245
|||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 1194 TCAAGTCAAAACCAAGATCAGCTTCAAAAGAAGGTTGTTTGGTCAAGTGTTAGAAGAATC 1253
Query 1246 TTGGTCAGAGTTGTAATTGTGAAAATCTGTAGAACTTCA-ATAACTAGAAGAAGTGTCAC 1304
||||| ||||||||||||||||||||| | ||| | ||||||||||||| || |||
Sbjct 1254 TTGGTTTCTTTTGTAATTGTGAAAATCTGTA-A-CTT-ATATAACTAGAAGAAATGCCAC 1310
Query 1305 TTTGTTGGTTGTG 1317
|||||||||||||
Sbjct 1311 TTTGTTGGTTGTG 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5