BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13200.1 Length=976 Score E Sequences producing significant alignments: (Bits) Value Ahg478699 jgi|Araly1|478699|fgenesh2_kg.3__1400__AT3G13200.1 1496 0.0 > Ahg478699 jgi|Araly1|478699|fgenesh2_kg.3__1400__AT3G13200.1 Length=957 Score = 1496 bits (810), Expect = 0.0 Identities = 915/964 (95%), Gaps = 14/964 (1%) Strand=Plus/Plus Query 17 tctctctctcGTAACACGCCTGAGAGT--TCTCGTCGTCCTTATCTCGATCTTGGTTGAT 74 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTCTCGTAACGCGCCTGAGAGTCCTCTCGTCGTCCTTATCTCGATCTTGGTTGAT 60 Query 75 TCGCTCTCCGATCGGAAATTAGGGCTT-TTGTTTTCTGAAGATGACGACTGCAGCACGAC 133 |||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 61 TCGCTCTCTGATCGGAAATTAGGG-TTATTGTTTTCTAAAGATGACGACTGCAGCACGAC 119 Query 134 CAACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCAT 193 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 120 CTACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCTT 179 Query 194 CTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAG 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAG 239 Query 254 GGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGATGAGCTTGAAGAGCGTG 313 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 240 GGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGAGGAGCTTGAAGAGCGTG 299 Query 314 AGAGGAGACATTTCTCATCAAAAGACAAATCATACAATGATGATAGAGATCGCAGAAGAG 373 ||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||| Sbjct 300 AGAGGAGACATTTCTCATCCAAGGACAAATCATACAGTGATGATAGAGAGCGCAGAAGAG 359 Query 374 GAAGTCAGCTTTTACTGGAAGACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCA 433 ||||||||||||||||||||| ||| ||| |||| |||||||| ||||| |||||||||| Sbjct 360 GAAGTCAGCTTTTACTGGAAGGCTCTAAACGGGACCCTGAAGATCGGATAATTCCTCGCA 419 Query 434 GTGTAGATGCtgatgattctgatgttgatatcaaaagtgacgatgatagtgatgacgaaa 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTGTAGATGCTGATGATTCTGATGTTGATATCAAAAGTGACGATGATAGTGATGACGAAA 479 Query 494 gtgacgatgatgatgaGGACGACACTGAAGCTCTTATGGCGGAACTCGACCAGATAAAGA 553 ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 480 GTGACGATGATGACGAGGACGACACTGAAGCTCTTATGGCTGAACTTGACCAGATAAAGA 539 Query 554 AAGAAAGAGTGGAAGAGAGGCTCAGGAAGGAAAAAG-AGCAGCAGATGGAAGAGCTAAAC 612 |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| Sbjct 540 AAGAAAGAGTGGAAGAGAGGCTGAGGAAGGAAAA-GCAGCAGCAGATGGAAGAGCTAAAC 598 Query 613 GCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCTTTTAGC 672 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 599 GCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCCTTTAAT 658 Query 673 GTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAAAACCAGGCACGTGGTGAAATGAAA 732 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 659 GTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAGAACCAGGCACGTGGTGAAATGAAA 718 Query 733 GCTCCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCAT 792 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GCACCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCAC 778 Query 793 AGATACATGAAGTGATTGTTTGTCAAGA-GTGTTATTGCTACTTCTTTGTATGATGATTA 851 |||||||||||||||||||| | || | ||||||||||||||| | ||||||||||||| Sbjct 779 AGATACATGAAGTGATTGTT-GAAAA-ATGTGTTATTGCTACTTGTCTGTATGATGATTA 836 Query 852 TGA-CTAAAAGCTTTTATTCTGTCTGGAATTACGATGTCTCTGTACTCAAACAACAA-AT 909 ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 837 TGAACTAAAAGCTTTTATTCTGTCTGGAATTATGATGTCTCTGTACTCAAACAACAACA- 895 Query 910 GTTTTTAAGCTTTATATCAAAAACTTATGCATTTGATTTTAATGTAATATCTCACAGATT 969 ||||| |||||||||||||||| | |||||||||||||| ||||| ||||||||||||| Sbjct 896 GTTTT-AAGCTTTATATCAAAAGCCTATGCATTTGATTT-AATGTTTTATCTCACAGATT 953 Query 970 CCTG 973 |||| Sbjct 954 CCTG 957 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36254894067 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5