BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13200.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478699 jgi|Araly1|478699|fgenesh2_kg.3__1400__AT3G13200.1 1496 0.0
> Ahg478699 jgi|Araly1|478699|fgenesh2_kg.3__1400__AT3G13200.1
Length=957
Score = 1496 bits (810), Expect = 0.0
Identities = 915/964 (95%), Gaps = 14/964 (1%)
Strand=Plus/Plus
Query 17 tctctctctcGTAACACGCCTGAGAGT--TCTCGTCGTCCTTATCTCGATCTTGGTTGAT 74
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCGTAACGCGCCTGAGAGTCCTCTCGTCGTCCTTATCTCGATCTTGGTTGAT 60
Query 75 TCGCTCTCCGATCGGAAATTAGGGCTT-TTGTTTTCTGAAGATGACGACTGCAGCACGAC 133
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 61 TCGCTCTCTGATCGGAAATTAGGG-TTATTGTTTTCTAAAGATGACGACTGCAGCACGAC 119
Query 134 CAACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCAT 193
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 CTACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCTT 179
Query 194 CTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAG 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAG 239
Query 254 GGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGATGAGCTTGAAGAGCGTG 313
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 GGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGAGGAGCTTGAAGAGCGTG 299
Query 314 AGAGGAGACATTTCTCATCAAAAGACAAATCATACAATGATGATAGAGATCGCAGAAGAG 373
||||||||||||||||||| || ||||||||||||| |||||||||||| ||||||||||
Sbjct 300 AGAGGAGACATTTCTCATCCAAGGACAAATCATACAGTGATGATAGAGAGCGCAGAAGAG 359
Query 374 GAAGTCAGCTTTTACTGGAAGACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCA 433
||||||||||||||||||||| ||| ||| |||| |||||||| ||||| ||||||||||
Sbjct 360 GAAGTCAGCTTTTACTGGAAGGCTCTAAACGGGACCCTGAAGATCGGATAATTCCTCGCA 419
Query 434 GTGTAGATGCtgatgattctgatgttgatatcaaaagtgacgatgatagtgatgacgaaa 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTGTAGATGCTGATGATTCTGATGTTGATATCAAAAGTGACGATGATAGTGATGACGAAA 479
Query 494 gtgacgatgatgatgaGGACGACACTGAAGCTCTTATGGCGGAACTCGACCAGATAAAGA 553
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 480 GTGACGATGATGACGAGGACGACACTGAAGCTCTTATGGCTGAACTTGACCAGATAAAGA 539
Query 554 AAGAAAGAGTGGAAGAGAGGCTCAGGAAGGAAAAAG-AGCAGCAGATGGAAGAGCTAAAC 612
|||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 540 AAGAAAGAGTGGAAGAGAGGCTGAGGAAGGAAAA-GCAGCAGCAGATGGAAGAGCTAAAC 598
Query 613 GCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCTTTTAGC 672
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 GCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCCTTTAAT 658
Query 673 GTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAAAACCAGGCACGTGGTGAAATGAAA 732
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 GTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAGAACCAGGCACGTGGTGAAATGAAA 718
Query 733 GCTCCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCAT 792
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCACCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCAC 778
Query 793 AGATACATGAAGTGATTGTTTGTCAAGA-GTGTTATTGCTACTTCTTTGTATGATGATTA 851
|||||||||||||||||||| | || | ||||||||||||||| | |||||||||||||
Sbjct 779 AGATACATGAAGTGATTGTT-GAAAA-ATGTGTTATTGCTACTTGTCTGTATGATGATTA 836
Query 852 TGA-CTAAAAGCTTTTATTCTGTCTGGAATTACGATGTCTCTGTACTCAAACAACAA-AT 909
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 837 TGAACTAAAAGCTTTTATTCTGTCTGGAATTATGATGTCTCTGTACTCAAACAACAACA- 895
Query 910 GTTTTTAAGCTTTATATCAAAAACTTATGCATTTGATTTTAATGTAATATCTCACAGATT 969
||||| |||||||||||||||| | |||||||||||||| ||||| |||||||||||||
Sbjct 896 GTTTT-AAGCTTTATATCAAAAGCCTATGCATTTGATTT-AATGTTTTATCTCACAGATT 953
Query 970 CCTG 973
||||
Sbjct 954 CCTG 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5