BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13220.1 Length=2058 Score E Sequences producing significant alignments: (Bits) Value Ahg318095 jgi|Araly1|318095|fgenesh1_pm.C_scaffold_3001111 3380 0.0 > Ahg318095 jgi|Araly1|318095|fgenesh1_pm.C_scaffold_3001111 Length=2058 Score = 3380 bits (1830), Expect = 0.0 Identities = 1984/2060 (96%), Gaps = 4/2060 (0%) Strand=Plus/Plus Query 1 ATGGAGATCAGAAGATCAACAGAAGAAGTTGAAGAGAATCATGTAATGCAGATTACAGGA 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGAGATCAGAAGATCAACAGAAGAAGTTGAAGAAAATCATGTAATGCAGATTACAGGA 60 Query 61 AGCAATGGCATAGTTCACAACATGGAGTTCATGCCACAAGCTTACCTCAGAAACCAATAC 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 AGCAATGGCATAGTTCACAACATGGAGTTCATGCCCCAAGCTTACCTCAGAAACCAATAC 120 Query 121 TCATCCGAGATTGACATTGATGAAGAGTTCGTTTCCACTTATCCTCTCGAAGATGCCCCT 180 ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| Sbjct 121 TCATCCGAGATTGACATCGATGAAGAGTTTGTTTCCTCTTATCCTCTCGAAGATGCCCCA 180 Query 181 CTTCCCATCTTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGAAACAGTCATGCTAGC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 CTTCCCATCTTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGAAACAGTCAAGCTAGC 240 Query 241 TCAGCAAACCTGGTGAAAACAATGGTGTCAAAGGTGGTAACACATACAAATCCGGATCCA 300 || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 241 TCGGCAAACCTGGTGAAAACCATGGTGTCAAAGGTGGTAACACATACGAATCCGGATCCA 300 Query 301 GATGGATACAAGCACATTTTGAAAGGCATAACAGGAAGCACAGGTCCTGGCGAAATCCTT 360 ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 301 GATGGGTACAAACACATTTTGAAAGGCATAACAGGAAGCACAGGTCCCGGCGAAATCCTT 360 Query 361 GCGCTAATGGGGCCTTCGGGTAGTGGCAAAACAACTCTTC-TGAAGATAATGGGAGGAAG 419 ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 361 GCGCTGATGGGTCCTTCGGGTAGTGGCAAAACAACTC-TCTTGAAGATAATGGGAGGAAG 419 Query 420 ATTGACAGATAATGTCAAGGGGAAGCTTACCTATAATGACATTCCTTACAGTCCATCTGT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 ATTGACAGATAATGTCAAGGGGAAGCTTACCTATAATGACATTCCTTACAGTCCATCTGT 479 Query 480 TAAGAGGAGAATTGGCTTTGTGACGCAAGACGATGTTCTGTTGCCACAACTTACTGTGGA 539 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TAAGAGGAGAATTGGTTTTGTGACGCAAGACGATGTTCTGTTGCCACAACTTACTGTGGA 539 Query 540 AGAGACCTTGGCATTTGCTGCGTTTTTAAGACTTCCAAGTAGCATGAGCAAGGAACAAAA 599 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 540 AGAGACCTTGGCATTTGCTGCGTTTTTGAGACTTCCAAGTAGCATGAGCAAGGAACAGAA 599 Query 600 ATACGCCAAAATAGAGATGATCATCAAAGAGCTCGGCCTCGAAAGATGCCGTCGGACAAG 659 |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 600 ATACGCCAAAATAGAGATGATCATTAAAGAGCTTGGCCTTGAAAGATGCCGTCGGACAAG 659 Query 660 AGTTGGAGGAGGTTTTGTCAAGGGAATATCAGGTGGAGAAAGAAAAAGAGCAAGTATAGC 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AGTTGGAGGAGGTTTTGTCAAGGGAATATCAGGTGGAGAAAGAAAAAGAGCAAGTATAGC 719 Query 720 TTATGAGATTCTCGTAGATCCTTCTCTGTTGCTTCTAGACGAGCCAACTTCTGGACTTGA 779 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTACGAGATTCTCGTAGATCCTTCTCTGTTGCTTCTAGACGAGCCAACTTCTGGACTTGA 779 Query 780 CTCCACTTCTGCCACCAAACTTCTTCATATTCTTCAAGGAGTAGCTAAGGCAGGCAGGAC 839 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 780 CTCCACTTCTGCCACCAAACTTCTTCATATTCTGCAAGGAGTAGCTAAGGCAGGAAGGAC 839 Query 840 CGTTATAACGACAATTCACCAACCATCAAGCAGAATGTTTCACATGTTTGACAAGCTCTT 899 |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 840 CGTTATTACGACAATTCACCAACCATCAAGCAGAATGTTTCACATGTTCGATAAGCTCTT 899 Query 900 ACTGATATCAGAAGGACACCCTGCCTTTTACGGCAAAGCCAGAGAATCTATGGAGTATTT 959 |||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 900 ACTGATCTCAGAAGGGCACCCTGCCTTTTACGGCAAAGCCAAAGAATCTATGGAGTATTT 959 Query 960 CTCATCTTTGAGAATCTTACCTGAGATTGCAATGAACCCAGCAGAGTTCTTGCTAGACTT 1019 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 960 CTCATCTTTGAGAATCTTACCTGAAATTGCAATGAACCCAGCAGAGTTCTTGCTAGACTT 1019 Query 1020 GGCAACCGGACAAGTTTCAGACATTAGTCTACCCGACGAACTATTGGCTGCCAAAACTGC 1079 ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || Sbjct 1020 GGCAACCGGACAAGTGTCAGACATTAGTCTACCCGACGAACTATTGTCTGCCAAAACCGC 1079 Query 1080 ACAGCCTGATTCTGAGGAAGTTTTACTCAAATACTTGAAACAAAGGTACAAGACAGACTT 1139 |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| Sbjct 1080 TCAGCCTGATTCTGAGGAAGTCTTAGTGAAATACTTGAAACAAAGGTACAAGACAGACTT 1139 Query 1140 GGAGCCAAAAGAGAAGGAAGAAAATCATAGAAATAGAAAGGCCCCAGAGCATCTTCAAAT 1199 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1140 GGAGCCAAAAGAGAAGGAAGAAAACCATAGAAATAGAAAGGCCCCAGAGCATCTTCAAAT 1199 Query 1200 AGCAATCCAAGTGAAGAAGGACTGGACTCTTTCATGGTGGGATCAGTTCTTGATTCTTTC 1259 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1200 AGCAATCCAAGTGAAGAAGGATTGGACTCTTTCATGGTGGGATCAGTTCTTGATTCTTTC 1259 Query 1260 AAGAAGAACATTCAGAGAGCGGCGTAGAGATTACTTTGATAAGCTAAGGCTAGTTCAATC 1319 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1260 AAGAAGAACATTCAGAGAGCGGCGTAGAGACTACTTTGATAAGCTAAGGCTAGTTCAATC 1319 Query 1320 ACTTGGTGTGGCCGTCGTGTTGGGTCTTCTCTGGTGGAAGTCAAAGACAGATACAGAGGC 1379 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 ACTTGGTGTGGCCGTTGTGTTGGGTCTTCTCTGGTGGAAGTCAAAGACAGATACAGAGGC 1379 Query 1380 TCACCTTAGAGACCAAGTTGGTTTGATGTTCTATATCTGCATCTTCTGGACATCGTCATC 1439 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1380 GCACCTTAGAGACCAAGTTGGTTTGATGTTCTATATCTGCATCTTCTGGACATCATCATC 1439 Query 1440 ACTCTTTGGAGCAGTATACGTGTTCCCCTTCGAGAAGATCTACCTGGTGAAAGAAAGAAA 1499 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 ACTCTTTGGAGCGGTATATGTGTTCCCCTTCGAGAAGATCTACCTGGTGAAAGAAAGAAA 1499 Query 1500 AGCAGAAATGTACAGACTTAGTGTGTATTACGTATGCAGTACACTATGTGATATGGTGGC 1559 |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1500 AGCAGACATGTACAGACTAAGCGTGTATTACGTATGCAGTACACTATGTGATATGGTGGC 1559 Query 1560 ACACGTTTTGTACCCGACATTCTTCATGATCATTGTCTACTTCATGGCTGAGTTCAATAG 1619 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1560 ACACGTTTTGTACCCTACATTCTTCATGATCATTGTCTACTTCATGGCTGGGTTCAATAG 1619 Query 1620 GAACATCCCCTGCTTCCTTTTCACCGTGTTGACAATACTACTGATAGCCATCACTAGCCA 1679 || |||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| Sbjct 1620 GACCATCCCCTGCTTCCTTTTCACCGTGTTGACTATACTATTGATAGCCATAACTAGCCA 1679 Query 1680 AGGTGCAGGAGAGTTCTTAGGAGCTTCAGTATTGAGCATTAAGAGAGCTGGTATGATCGC 1739 ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1680 AGGAGCAGGAGAGTTCTTGGGAGCTTCAGTTTTGAGCATTAAGAGAGCTGGTATGATCGC 1739 Query 1740 CTCTTTGGTACTAATGCTGTTTCTACTAACCGGAGGTTACTATGTCCAGCACATACCAAA 1799 |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || Sbjct 1740 CTCTTTGGTACTAATGCTGTTTCTTCTAACCGGAGGTTACTATGTTCAGCACATACCCAA 1799 Query 1800 ATTCATGCAGTGGTTGAAGTACTTGTCATTCATGCACTACGGCTTCAGGCTACTTTTGAA 1859 ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 1800 ATTCATGCAGTGGTTGAAGTACTTGTCCTTCATGCACTACGGCTTCAGGCTGCTATTGAA 1859 Query 1860 AGTTCAATACTCAGCTGACCAACTTTTCGAATGTGGGAGCAAAGGCGGCTGCAGGACACT 1919 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1860 AGTTCAATACTCAGCGGACCAACTTTTCGAATGTGGGAGCAAAGGCGGGTGCAGGACACT 1919 Query 1920 GCAAAGCTCATCGTCCTTTGACAC-GATAAACTTGAATGGCGGCTTACAAGAACTGTGGG 1978 |||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| Sbjct 1920 GCAAAGCTCATCGTCCTTTGACACAG-TCAACTTGAATGGCGGCTTGCAAGAACTGTGGG 1978 Query 1979 TTCTGCTTGCCATGGCATTCGGCTACCGTCTCTGTGCATACTTTTGCCTTCGCAAGAAAA 2038 |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1979 TTCTGCTTGCTATGGCATTCGGCTACCGTCTCTGTGCATACTTCTGTCTTCGCAAGAAAA 2038 Query 2039 TAAGCATTTGCCATCTTTGA 2058 |||| ||||||||||||||| Sbjct 2039 TAAGTATTTGCCATCTTTGA 2058 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77399377840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5