BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13222.1
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478702 jgi|Araly1|478702|fgenesh2_kg.3__1403__AT3G13222.1 2835 0.0
> Ahg478702 jgi|Araly1|478702|fgenesh2_kg.3__1403__AT3G13222.1
Length=2039
Score = 2835 bits (1535), Expect = 0.0
Identities = 1895/2061 (92%), Gaps = 55/2061 (3%)
Strand=Plus/Plus
Query 9 CCCATATTtcctctctcctcctccctccgcttctct-t-tc--t-ctctGTA-ACCAACA 62
||||||||| ||| |||||||||||||||||||||| | || | ||| || |||||||
Sbjct 1 CCCATATTTTCTCGCTCCTCCTCCCTCCGCTTCTCTCTCTCTATAATCTATATACCAACA 60
Query 63 TGAGCAGGATCAGCGGCGATGGCGGCTCTAGGGTTTCTATTCCGGCTGATCTGCTTCAAA 122
||||||| | |||| |||||||||||||||||||||| |||||||| ||| ||||| |||
Sbjct 61 TGAGCAGCAGCAGCTGCGATGGCGGCTCTAGGGTTTCGATTCCGGCCGATTTGCTTGAAA 120
Query 123 CCATTCAAAACATCAGAGAGGTTACCGGTAAACAACATTCCGACGAGGATATCTTCTCTG 182
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCATTCAAAACATCAGAGAAGTTACCGGTAAACAACATTCCGACGAGGATATCTTCTCTG 180
Query 183 TCTTTAAGGAGTGTTTCAGTGATCCACATGAGACCACTCAGAAGCTTCTCTATTTAGATA 242
|||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 181 TCTTTAAGGAGTGTTTCAATGATCCACATGAGACCACTCAGAAGCTCCTCTTTTTAGATA 240
Query 243 CATTTCATGAGGTGAGAAGCAAACGGGAGAGAAAGAAAGAGAATTTAGTGCCAAATACAC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CATTTCATGAGGTGAGAAGCAAACGGGAGAGAAAGAAAGAGAATTTAGTGCCAAATACAC 300
Query 303 AAGGAAGGGGCCGGACTGGACGGAAGAACTTTGCTTCAAGTTACACAGATGCCAGTAATG 362
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGAAGGGGCCGGACCGGACGGAGGAACTTTGCTTCAAGTTACACAGATGCCAGTAATG 360
Query 363 GAAGAAGTGCAGCTTTTAAAAAGCAGAGTGGAGCTAATCACATAATAGGAGGTTCTGGAA 422
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 GAAGAACTGCAGCTTTTAAAAAGCAGAATGGAGCTAATCACATAATAGGAGGTTCTGGAA 420
Query 423 CTGCTTCGTCTGCTCCTAACAATGCAAGAAACGACACAAAACCTTCTTCCATAATGGCCC 482
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 CTGCTTCGTCTGCTCCTAACAATGCAAGAAACGACACAAAACCTTCTTCTATAATGGCCC 480
Query 483 CGAACCCTATAAGTCTTCCAAGTGGAATCAGTAACCAGAAAATTCAAGATGCTATCATAT 542
| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 481 CTAACCCTATAAGTCTTCCAAGTGGAATCAGTAACCATAAACTTCAAGATGCTATCATCT 540
Query 543 CCCCTGTGGACAAGGTG-GACACAGAGGAACAGCCTCTCTCCAAGGCTACTTCTTCTTCT 601
|||||||| |||||| | | ||||||||||||||||||| ||||| |||||||||| |||
Sbjct 541 CCCCTGTGAACAAGG-GAGTCACAGAGGAACAGCCTCTCCCCAAGTCTACTTCTTCGTCT 599
Query 602 AAGGATGTTGTTGAGCCGGATAAGTCTAAAGAAAGTAGTGTATCAGTGGCTGTATCAGAT 661
|||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||
Sbjct 600 GAGGATGTTGTTGAGCCGGATAAGTCTAAAGCAAGTACTCTACCAGTGGCTGTATCAGAT 659
Query 662 TCTGTTGTAGAAAACGATACTCAATATGCTGTAGTTGAAACTTTTCAGATCCCACAACAG 721
||||||||||| |||| | | || | || | ||||| ||||||||||||||||
Sbjct 660 TCTGTTGTAGAGAACG--A-T--GTA----G-AG--GGAACTTCTCAGATCCCACAACAG 707
Query 722 TCCGAGCGAGTCATTAAGAGTGAGGTTGCAGCCAGTAAATGCAAGAATGAGTCGCTTCTC 781
|| ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 708 TCAGAGCGAGTCATTAAGAGTGAGGTTGCAGCCAATAAAGGCAAGAATCAGTCGCTTCTC 767
Query 782 AAGTCGGATGTTGGTGAACGGCCGCACGTAACATTTCCTGTCCACATTCAGGTTGCCAAA 841
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 768 AAGTCAGATGTTGGTGAACGGCCACACGTAACATTTCCTGTCCACCTTCAGGTTGCCAAA 827
Query 842 ATGCTGGAAAATGGTCTGACATTTGGGAGCTTCGATTCTAATTTTGTGAGAGAGGCATCT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ATGCTGGAAAATGGTCTGACATTTGGGAGCTTCGATTCTAATTTTGTGAGAGAGGCATCT 887
Query 902 TCTGACAAGTT-TACTATTGGGTGTGATGACTCCAATATTGAGTCTTCTCATGGGACA-- 958
|||||||| || |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 888 TCTGACAA-TTGTACTATTGGGTGTGATGACTCCGATAGTGAGTCTTCTCATGGGACAGC 946
Query 959 -GCC------GCATCAGCTAGGAAAGATATATCAACTTTTTCTCAGGATAAGAATCATGA 1011
||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 947 GGCCTATGGGGCATCAGCTAGGAAAGATATATCATCTTTTTCTCAGGATAAGAATCATGA 1006
Query 1012 GATTTCAAATTCAGCAGCTCAGAACGAGTTAACATTGCAGCCAGATCAAACTGTTCTCCC 1071
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1007 GATTTCAAATTCAGCAGCTCAGAACGAGCTAACATTGCAGCCAGATCAAACTGTTCTCCC 1066
Query 1072 TGAAGAAGGTTCAGAAGGAGATAAAGTAAAGAACGAGGTTTTACCAATCACAGACACTCA 1131
|| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1067 TGTAGAAGGTTCAGAAGGAGATAAAGTAAAGGACGAGTTTTTACCAATCACAGACACTCA 1126
Query 1132 TCAGGCTGCAAAGTGTGATGCTCCACCTATCTCCTATCCTGATCAGTATTCCTTAGCAGC 1191
||||||||||||||||||||||||||| ||||| || ||||| ||||||||| |||| ||
Sbjct 1127 TCAGGCTGCAAAGTGTGATGCTCCACCGATCTCTTACCCTGACCAGTATTCCATAGCTGC 1186
Query 1192 CGCTCAACAGGCAATGCACCTTTATAGGCAACAATACTCTCTTAACTATTTCCCTTATGG 1251
|||||||||||||||||||||| | |||||||||||||||| |||| |||||||||| |
Sbjct 1187 CGCTCAACAGGCAATGCACCTT-A--GGCAACAATACTCTCTAAACTTTTTCCCTTATAG 1243
Query 1252 TCCATATTTCCCCCCTTATTATATGCCGCAACCATACATTCACCAGTACTTGAGCCCAAA 1311
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TCCATATTTCCCCCCCTATTATATGCCGCAACCATACATTCACCAGTACTTGAGCCCAAA 1303
Query 1312 TGGGTTCCAACAACAGTCTTACTTACCACCCGGAGATGATGCTCCAGCACCTCCAGGGGC 1371
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1304 CGGGTTCCAACAACAGTCTTACTTACCACCCAGAGATGATGCTTCAGCACCTCCAGGGGC 1363
Query 1372 TGAACTACCTCTCACTCACATCAAACCCGGAAGCGACATTGGAAACTCTCCACCTACCAC 1431
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1364 TGAACTACCTCTCACTCACATCAAACCAGGAAGCGACATTGGCAACTCTCCACCTACCAC 1423
Query 1432 GATTCCATTCTCATATACTTCATACGCCTTCAACCACATCCCATCAGCAGCCACCATAAA 1491
||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1424 AATTCCATTCCCATATGCTTTATACGCCTTCAACCACATCCCATCAGCAGCCACCGTAAA 1483
Query 1492 TGCTACTCACAAGGAAGAAAAGAAGGAAAACATGTACACAACTGGACCACTGAGTCTAGC 1551
| || | |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1484 CACCACCCTCAAGGAAGAAAAGAAGGAAAACATTTATACAACTGGACCACTGAGTCTAGC 1543
Query 1552 CAATCTGCAGGCCAGTCCCATGTACAACTTATCCCTTCAAGGTCAGCCTATAGCTTTCCC 1611
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1544 CAATCTGCAGGCCAGTCCCATGTACAACTTTTCCCTTCAAGGTCACCCAATAGCTTTCCC 1603
Query 1612 AACCATGCAGGCTGGGATCC-GTGG-GTTATATCAACAAACACAGCCAATACTGGCGCCT 1669
|||||||||| ||||||||| | || || ||| |||||||||||||| | |||||||||
Sbjct 1604 AACCATGCAGCCTGGGATCCCG-GGAGT-ATACCAACAAACACAGCCCGTGCTGGCGCCT 1661
Query 1670 C-TATCTATATCTGCGAGGACTGAACCCATAGGACCATCGCACGTAACTAATCAGCAACC 1728
| || |||||||| | |||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 1662 CCTA-CTATATCTACAAGGACTGAACCCATAGGACCCTCACACATAACTAATCAGCAACC 1720
Query 1729 TCAAGCTGCACGAACAAATCTGGGAAACAACTACTAGGTCAAGGAGTATTACTAGAAAGA 1788
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1721 TCAAGCTGCACTAACAAATCTGGGGAACAATTACTAGGTCAAGGAGTATTACTAGAAAGA 1780
Query 1789 TGCATATTCAGATTGGTACGAGATGTTTAAGTCTGGAATTTTGAGTGATTTTGTGTACAT 1848
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1781 TGCATATTCAGATTGGTAAGAGATGTTCAAGTCTGGAATTTTGAGTGATTTTGTGTACAT 1840
Query 1849 ACTTAGGATACATCACCCCCCAAGAAGAAGATTAGTATTTGGCAA---G----GGG-ACA 1900
|||||||||| |||||||| ||||||||| |||||||| |||||| | ||| |||
Sbjct 1841 ACTTAGGATATATCACCCCGCAAGAAGAA-ATTAGTATGTGGCAATTTGACAAGGGGACA 1899
Query 1901 AGAGAATTGGTGCC-ttttgttttttcaatttttGTGAGTGCCACAAACCGCTTT--G-A 1956
|||||||||||||| |||| |||||| ||||||||||| |||||||| |||| | |
Sbjct 1900 AGAGAATTGGTGCCCTTTTTTTTTTTTTTTTTTTGTGAGTACCACAAACAGCTTCAAGGA 1959
Query 1957 TCTCGTTTATCTGTAATTCTTCCGAATCTTACAATATAATCAAGTGATCAGTTTATATGA 2016
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 1960 TCTCGTTTATCTGTAATTCTTCCGGATCTTACAATATAACCAAGTGATCAGTTGATATGA 2019
Query 2017 GCAAGTG-GACATTTATTCTC 2036
|||| || | |||||||||||
Sbjct 2020 GCAAATGAG-CATTTATTCTC 2039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76637572940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5