BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13224.2
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478704 jgi|Araly1|478704|fgenesh2_kg.3__1405__AT3G13224.1 1762 0.0
> Ahg478704 jgi|Araly1|478704|fgenesh2_kg.3__1405__AT3G13224.1
Length=2150
Score = 1762 bits (954), Expect = 0.0
Identities = 1211/1327 (91%), Gaps = 50/1327 (4%)
Strand=Plus/Plus
Query 641 AGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCTCTAAACCGTTCACCTCCTTCTTACG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCTCTAAACCGTTCACCTCCTTCTTACG 909
Query 701 GTAGTCACCCTAGAGGTCGTTCTTCTAACGATAGTTAT-GCAAGTTATGGTGGACCTTAC 759
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 910 GTAGTCACCCTAGAGGTCGTTCTTCTAACGATAGTTATGGC-GGTTATGGTGGACCTTAC 968
Query 760 GGAGGTTTTGATGGAGGGTATGGTCATCCTCCAGGTCCCATTAGGTCACATGGAGGTCCT 819
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 969 GGAGGTTTTGATGGAGGTTATGG---TCCTCCAGGTCCCATTAGGTCACATGGAGGTCCT 1025
Query 820 GCTAGTAGATATGCTGGGGGATATGGGTATGGTCGTGGCAGTGTAGGCCCTGAATTTGGA 879
||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1026 CCTAGTAGGTTTGCTGGGGGATATGGGTATGGTCGTGGCGGTGTAGGCCCTGAATTTGGA 1085
Query 880 GGAGGTTATAATAATTATGGGGGTGGTAGTTTAGGAGGTTACCGGAATGAACCACCCCTT 939
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGAGGATATGGTAATTATGGGGGTGGTAGTTTAGGAGGTTACCGGAATGAACCACCCCTT 1145
Query 940 GGCTATTCTAGTCGTTTTGGACCCTATGGGAGTGGGTTTGGTGGTGAGGGATATGGCCGT 999
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct 1146 GGCTATTCTAGTCGTTTTGGACCCTATGGGAATGGGTTTGGTGGCGAGGGATATGGTCGT 1205
Query 1000 GGAGGAGAAGG-AGCCTATTTGGG-ATATCCTCGTGGAGGAGGGGAAGGCTATGGGGGAT 1057
||||||| || || ||| | ||| |||| ||||||||| |||||||||||||||||||
Sbjct 1206 GGAGGAG-GGGAAGGCTA-TGGGGCATATGGTCGTGGAGGTGGGGAAGGCTATGGGGGAT 1263
Query 1058 ATGGTGGGCCTGGTTACGGCGGTGCATATGAATCTGGTGGCCCAGGTGGCAGTTATGAAG 1117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 ATGGTGGGCCTGGTTACGGTGGTGCATATGAATCTGGTGGCCCAGGTGGCAGTTATGAAG 1323
Query 1118 GAGCAGGTGGTCCATATGGGAGGGGTTATAGTAGCAGTAGTCGATACCATCCGTATGCAA 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GAGCAGGTGGTCCATATGGGAGGGGTTATAGTAGCAGTAGTCGATACCATCCGTATGCAA 1383
Query 1178 GGTAGGGTCGAGGTAATAGCAATCAGTTGGAGCTATAGAAGCTTCTCTCACAGGTTCCTC 1237
| ||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 1384 GATAGGGTCGAGGTAATAGCAATCAATAGAAGCTATAGAAGCTTCTCTCACAGGTTTCTC 1443
Query 1238 TAGATTGTTCCAATTGCTCTAGGTGCATTCTAGAGTTATCATGTAGCGCCAACATCAGGA 1297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TAGATTGTTCCAATCGCTCTAGGTGCATTCTAGAGTTATCATGTAGCGCCAACATCAGGA 1503
Query 1298 AGGGTTGCTAAGGACAGGAAGAGCATCAAAAAGCTTTTATTAGTCATCTTTTAGTTGTGT 1357
||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1504 AGGATTGCTAAGGACAGGAAGAGCATCAAAAAACTTTTATTAGACATCTTTTAGT-GTGT 1562
Query 1358 GTTTACCTAATTTAAGTGTTGTCTTATCTCTATAACTTAGATTGTGTTATGTAGACTTTA 1417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1563 GTTTACCTAATTTAAGTGTTGTCTTATCTCTTTAACTTAGATTGTGTTATGTAGACTTTA 1622
Query 1418 GCATATTTGGGCTTGGAGTTTGTTTCTCACTGGCACAAGAATGATTTATCATTTGGTAGT 1477
| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1623 GAATATTTGGGTTTGGAGTTTGTTTCTCACTGGCACAAGAATAATTTATCATTTGGTAGT 1682
Query 1478 CTTGTTAGATGATCAATTACTCGCTTAGCTTAGTTTT-CACAATCATACGAATTAGCTTA 1536
||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 1683 CTTGTTAGATGATCAATCACTCGCTTAGCTTAGGTTTGCACAATCATACGAATTAGCTAA 1742
Query 1537 AGAAGCTCTGCAAAATGTGCACTCATCTATTCTTTAGAGCTCAAGTTGAATGCTTTATGT 1596
|||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1743 AGAAGCTCGGCAAAATGTGCATTCATCTATTCTTTAGAGCTCAAGTTAAA--CTTTATGT 1800
Query 1597 GGTCTCTTGT-ATCTCTGTACATTTTGTTGTGCTGAACAAAGGTTTGACGGCAGTTAGTG 1655
||| |||| | ||||||||| |||||||||| | ||||||||||| || |||||||||||
Sbjct 1801 GGTGTCTTCTTATCTCTGTAGATTTTGTTGTTCCGAACAAAGGTTCGAGGGCAGTTAGTG 1860
Query 1656 CATGTGTAAGTA-G--G-CATATTTTTGTCAGCTGCATACGTAGGTTCTAGCTACAAATT 1711
||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1861 TATGTGTAAGTAAGTAGGCATATTTTTGTCAGCTGCGTACGTAGGTTCTAGCTACAAATT 1920
Query 1712 GGAATTGTATGTGTTTGAAAACGTAAAATCAATTATAAATGTTTTTGAAAATCATCTATA 1771
|||||||||| ||||| |||||| || | |||||||||||| |||||||
Sbjct 1921 GGAATTGTATATGTTTTAAAACG-AA--T-----------GTTTTTGAAAATTATCTATA 1966
Query 1772 CAAGCATGGTTATT-T--GGTTCTTGTTTCCTTATTTTTTCGGGTAAGGGCCACGGATAA 1828
||||||||||||| | |||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1967 TAAGCATGGTTATTATTTGGTTTTTGTTTCCTTATTTTTTAGGGTAAGGACCACGGATAT 2026
Query 1829 TTGGTTAGACATT-G--GTTCTAATAATGTGGGTTTTGTTATCTGTAATTTCTCGTCAAA 1885
|| ||| || ||| | ||||| ||||||||| ||||||||||| ||||||||| | |||
Sbjct 2027 TTTGTTTGAGATTCGTTGTTCTGATAATGTGGATTTTGTTATCTATAATTTCTCATTAAA 2086
Query 1886 ATGATGTAC-T----GT----ATCATTAAATGAATATCACTTATTGTACATGCTTTTATA 1936
||||| ||| | || |||||||||| ||| |||| |||||||||||||||| |
Sbjct 2087 ATGAT-TACATTTTAGTTTGTATCATTAAATAAATTTCAC--ATTGTACATGCTTTTAGA 2143
Query 1937 AGTTAAT 1943
|||||||
Sbjct 2144 AGTTAAT 2150
Score = 966 bits (523), Expect = 0.0
Identities = 595/628 (95%), Gaps = 12/628 (2%)
Strand=Plus/Plus
Query 28 CAGATCTTATCAAAACCCTAGCTTTCGGTGTCTCTCTCGATCCTT---T---AG-----C 76
||||||||||||||||||||||||||||| ||||||||||||||| | || |
Sbjct 1 CAGATCTTATCAAAACCCTAGCTTTCGGTTTCTCTCTCGATCCTTAGCTCGGAGAATTTC 60
Query 77 TCAATCGAAAACTGAATTTAGGAGCTGCGATGGGTTCCAGATCTCGTAATGATAATTTCC 136
|||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 61 TCAATCGAAAACTGTA-TTAGGAGCTACCATGGGTTCCAGATCTCGTAATGATAATTTCC 119
Query 137 AGTCCGGCGATGGCGCTAGTCCTGGGAAAATATTCATTGGAGGATTGCACAAAGACACGA 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGTCCGGCGATGGCGCTAGTCCTGGGAAAATATTCATTGGAGGATTGCACAAAGACACGA 179
Query 197 CTAATACTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTA 256
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCAATACTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTA 239
Query 257 TGCGAGATCGACATACTGGACAACCTAGGGGTTTCGGTTTCATCACCTTCGCTGACCCTT 316
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TGCGTGATCGACATTCTGGACAACCTAGGGGTTTCGGTTTCATCACCTTTGCTGACCCTT 299
Query 317 CTGTTGTTGACAAAGTTATCGAAGATACTCATGTCATCAATGGCAAACAGGTTGAGATCA 376
|||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 300 CTGTCGTTGACAAAGTTATCGAAGATAATCATATCATCAATGGCAAACAGGTTGAGATCA 359
Query 377 AAAGGACTATTCCGAAAGGTGCTGGTGGCAATCAGTCAAAGGACATCAAAACAAAGAAGA 436
||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 360 AAAGGACTATTCCAAAAGGTGCTGGCGGCAATCAGTCTAAGGATTTCAAAACAAAGAAGA 419
Query 437 TTTTCGTTGGTGGTATACCCTCAACGGTTACAGAAGATGAACTTAAGGACTTCTTTGCCA 496
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 420 TTTTCGTTGGTGGTATACCCTCCACTGTTACAGAAGATGAACTTAAGGACTTCTTTGCCA 479
Query 497 AGTATGGGAACGTGGTGGAGCACCAGGTTATTCGAGACCATGAAACAAACAGGTCCAGAG 556
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 AGTATGGGAACGTGGTGGAGCACCAGGTTATCCGAGACCATGAAACAAACAGGTCCAGAG 539
Query 557 GTTTTGGTTTTGTAATTTTTGATAGCGAAGAAGTCGTAGATGAATTATTGTCCAAAGGAA 616
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTTTGGTTTTGTTATTTTTGACAGCGAAGAAGTCGTAGATGAATTATTGTCCAAAGGAA 599
Query 617 ACATGATCGATATGGCAGACACTCAGGT 644
||||||||||||||||||||||||||||
Sbjct 600 ACATGATCGATATGGCAGACACTCAGGT 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73971255790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5