BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13226.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904224 jgi|Araly1|904224|Al_scaffold_0003_1352 1663 0.0
> Ahg904224 jgi|Araly1|904224|Al_scaffold_0003_1352
Length=1137
Score = 1663 bits (900), Expect = 0.0
Identities = 1073/1154 (93%), Gaps = 22/1154 (2%)
Strand=Plus/Plus
Query 77 ATGCTGAAACTAGGGTTTCGGTTAGCGATTGGCATTCAACATCATCGCCTCTTCCG-TAT 135
|||||||||||||||||||| ||| |||||| ||||| | | |||||| |||| || |||
Sbjct 1 ATGCTGAAACTAGGGTTTCGTTTATCGATTGCCATTC-A-A-CATCGCGTCTT-CGTTAT 56
Query 136 TCCATGGGCGAAGAGACACTCTGTACCTAGAATCTTGTGTTCTGAGCAGCGGGATTACTG 195
|||||||| |||||||||||||| |||||||||| ||||||| || |||||||| ||| |
Sbjct 57 TCCATGGGTGAAGAGACACTCTGCACCTAGAATCGTGTGTTCAGACCAGCGGGACTACAG 116
Query 196 TTCATCAGGTCTGACAAAGTATGTTCCTAAGAAGTCTCGGAAGATTACTGAAGATTTGAC 255
||| || ||||||| ||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 117 TTCGTCGGGTCTGATTAAGTATGTTCCAAACAAGTCTCGGAAGATTACTCAAGATTTGAC 176
Query 256 ATCTCAGCAAT-TTGATGTTACTAGAGTGGATCATAGTGTGTTGGGATTTCAAGTTAAGG 314
|||||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 177 ATCTCAGC-CTCTTGATGTTACTAGATTGGATCATAGTGTGTTGGGATCTCAAGTTAAGG 235
Query 315 GTAACAGCAAAGAGGCTAGAGATGGCTCATTTTTGGATCTGCAAGAGGAA-AATGATACT 373
|||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 236 GTAACAGCAAAGAGGCTAGAGATGGCACATTTTTGGATCTGCAAGA-GAAGAATGATACT 294
Query 374 GGAAGTTACACGAATGTGTCTTGTGATGACTCTGATGAAGGT-TTTATGAGTTTGGACAA 432
|||||||||| ||||||||| |||||||| |||||||||||| ||| |||||||||||||
Sbjct 295 GGAAGTTACATGAATGTGTCCTGTGATGATTCTGATGAAGGTATTT-TGAGTTTGGACAA 353
Query 433 GGGTATAGATGCTAGTAGATTGGATCATAGTGTATTGGGGTCTAAAGTGAAGGCTAACAT 492
||||||| |||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 354 GGGTATAAATGCTAGTAGATGGGATCATAGTGTTTTGGGGTCTAAAGTCAAGG------- 406
Query 493 CAAAGAGACTGGAGAGGATACTGATTTT-CATCTGCGGGATAAAAATGATGCTGATATGT 551
||||||| ||||||| ||||| |||| |||||||| | ||||||||||||||| ||||
Sbjct 407 --AAGAGACCGGAGAGGGTACTG-TTTTACATCTGCGAGTTAAAAATGATGCTGAAATGT 463
Query 552 ACTCTGATGTTTCTTGTGATGACTCTAATGATGAAAGCAGCAACGAAGTTAGATCTACAG 611
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 464 ACTCTGATGCTTCTTGTGATGACTCTAATGAAGAAAGCAGCAACGAAGTTAGATCTACAG 523
Query 612 GCTATAAGTCGACGAGACAACACAAACAAGCTTATGATAAAATCAAACTACATTTGGAAG 671
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 524 GCTATAAGTCGACGAGACAACACAAACAAGCTTATGATAAAGTCAAACTACATATAGAAG 583
Query 672 CTGAACAGGCCAAGAGTAGCAAAGAAGCCTGCAAAACCACGCAAGATGCAGAGCACATGG 731
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 584 CTGAGCAGGCCAAGAGTAGCAAAGAAGCCTGCAAAACCACGCAAGAGGCAGAGCACATGG 643
Query 732 CTATTCGCTATCTCGGTTTAAGAGCATATTCAGCAGCTGACCTGAAGAAGAAGCTCATAG 791
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 644 CTATTCGCTATCTCGGTTTAAGAGCATATTCAGCAGCTGACCTCAAAAAGAAGCTCATGG 703
Query 792 GAAAGAAATATCCTATTGAAGTCGTTGACAAAGTGATCGATGATTTCCAGATTCGAGGTT 851
|||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 704 GAAAGAAATATCCTCTTGAAGTCGTTGACCGAGTGATCAATGATTTCCAGATTCGAGGTT 763
Query 852 TTGTCAATGATAGCTTGTACGCGGAGTCATTCACTCGATCTAGATGGTCTTCCTTAAGTT 911
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TTATCAATGATAGCTTGTACGCGGAGTCATTCACTCGATCTAGATGGTCTTCCTTAAGTT 823
Query 912 GGGGACCAAGGCGGATCAAACAAGCATTGTTTAAGAAAGGCATAAGCAACAAAGACTCAG 971
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GGGGACCAAGGCGGATCAAGCAAGCATTGTTTAAGAAAGGCATAAGCAACAAAGACTCAG 883
Query 972 AGACGGCCATAAAGCTGGTTTTTGAGAAACGCCAATGCAATGAAGGAGATGAAGAAGCAG 1031
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 884 AGACAGCCATAAAGCTGGTTTTTGAGAAACGCCAATGCAATGAAGGAGATGAAGAACCAG 943
Query 1032 AACTAAACCACGGGCTGTCCAAGGAAGCAGTGGACCAGCTTTATGTCCAGGCATCAAAGC 1091
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 944 AACTAAACCACGGGCTGTCCAAGGAAGCAGTGGATCAGCTTTATGTTCAGGCATCAAAGC 1003
Query 1092 GGTGGCTTCAAGGTCGAGACTTGCCTACAGAAACTCGTAAAACTAGAGTCATCCGGTGGC 1151
||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1004 GGTGGCTCCAAGGCCGAGACTTGCCTATAGAAACTCGTAAAGCTAGAGTCATCCGGTGGC 1063
Query 1152 TTCAGTACCGGGGTTTCAACTGGGGTGTCGTTACCCAGCTTCTAAAGAGGTTAGAGTCTA 1211
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TTCAGTACCGGGGCTTCAACTGGGGTGTCGTTACCCAGCTTCTAAAGAGGTTAGAGTCTA 1123
Query 1212 CTCATGAGTCGTGA 1225
||||||||||||||
Sbjct 1124 CTCATGAGTCGTGA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5