BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13227.1

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478705 jgi|Araly1|478705|fgenesh2_kg.3__1406__AT3G13227.1         699    0.0  


> Ahg478705 jgi|Araly1|478705|fgenesh2_kg.3__1406__AT3G13227.1
Length=485

 Score =  699 bits (378),  Expect = 0.0
 Identities = 458/493 (93%), Gaps = 19/493 (4%)
 Strand=Plus/Plus

Query  19   ACAAATGGAAGGGAAAGAGGAAGAAGCAAAGAGGAGGATGATGATGAAGATCAAACTTAA  78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ACAAATGGAAGGGAAAGAGGAAGAAGCAAAGAGGAGGATGATGATGAAGATCAAACTTAA  60

Query  79   GGAGACAGAAGCAGACG-TAAGCCAAGACGACATTAAAAGACAAGAAGCTTACAACATGT  137
            ||||||||||||||| | ||| |||||| || ||||||||||||||||||||||| ||||
Sbjct  61   GGAGACAGAAGCAGA-GATAAACCAAGATGATATTAAAAGACAAGAAGCTTACAATATGT  119

Query  138  CTCCACGCGTACGTCgtggtggtggtggtggcggtggCTCGGTAGGTATGAGCAAGTCAT  197
            ||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct  120  CTCCACGTGTACGTCGTGGTGGTGGTGGTGG---TGGCTCGGTAGGTATGAGCAAGTCAT  176

Query  198  CGAGCGTGAGGCAAAACTGTTTATGCGCACCAACTACACACCCTGGCTCCTTCAGGTGCC  257
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  177  CGAGCGTGAGGCAAAACTGTTTATGCGCACCAACGACACACCCTGGCTCCTTCAGGTGCC  236

Query  258  GTTACCACCGTCGTAACGCTGGACTCGGGATGTCTCGTGGCACATCCGTTCCCTCTAACC  317
            ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct  237  GTTACCACCGTCGCAACGCTGGACTCGGCATGTCTCGTGGCATATCCGTTCCCTCTAACC  296

Query  318  TTTCCATGTTGGCTGGTGGAGACTCTAA-T-T----CTCCCAAGTGATGATTAATATATA  371
            |||||||||||| ||||||||||||||  | |    ||||||||||||  | | ||||| 
Sbjct  297  TTTCCATGTTGGGTGGTGGAGACTCTATCTCTGGTTCTCCCAAGTGAT--TCA-TATAT-  352

Query  372  TTATGTGTTTCTTCTCATCAATTTAAAATTCTCGTATGTGTCTGTGTATATACAAAAATG  431
            | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  353  TAATGTGTTTCTTCTCATCAATTTAAAATTCTCGTATGTGTGTGTGTATATACAAAAATG  412

Query  432  CATAAGTCGAGAAATCTCTGGATATTCA--C--TTTGCTGTTTGCACAAATGAAATAAAT  487
            ||||||| ||||||||||||||||||||  |  |||||||||||||||||||||||||||
Sbjct  413  CATAAGTAGAGAAATCTCTGGATATTCATTCACTTTGCTGTTTGCACAAATGAAATAAAT  472

Query  488  TCAAATGATCGTG  500
            |||| ||||||||
Sbjct  473  TCAAGTGATCGTG  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18162060364


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5