BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13228.1 Length=1288 Score E Sequences producing significant alignments: (Bits) Value Ahg341444 jgi|Araly1|341444|fgenesh1_pg.C_scaffold_3001207 623 1e-177 Ahg920819 jgi|Araly1|920819|scaffold_102100.1 309 3e-83 > Ahg341444 jgi|Araly1|341444|fgenesh1_pg.C_scaffold_3001207 Length=948 Score = 623 bits (337), Expect = 1e-177 Identities = 514/597 (86%), Gaps = 22/597 (4%) Strand=Plus/Plus Query 510 GGATCCTGAACCAAAAGATTCCGGCGGCACAATCAGAGTCAATGCAGTGATCAAGAATGA 569 ||||| ||||||| |||| | | |||||||||||||||| ||||| ||||| ||| Sbjct 357 GGATCTTGAACCAGAAGA-T--GCCGGCACAATCAGAGTCGATGCATTGATCTTCTGTGA 413 Query 570 AAATGATATCTTGACTTTCACGACTTTGACGTTTGTCAACGAATTCCTCAA-CCAAGAT- 627 | |||||||||||||||||||||||||| | | || |||||||||| | || | | ||| Sbjct 414 AGATGATATCTTGACTTTCACGACTTTGTCCTCTGCCAACGAATTCAT-AATCGATGATC 472 Query 628 -T----TTTGTC---TC---GTAGACTGGTGTAATTTCATGAAGGAAGCAGGGATCAGCG 676 | |||| | ||||||| | | ||||| |||| ||||||||||| |||| Sbjct 473 GTGACGAGTGTCGAAGCAAAGTAGACTTGAATGATTTCTTGAAAGAAGCAGGGATTAGCG 532 Query 677 ACCAAAATATTCCAGTTGTGATTTATCATATTTTA-TATGTTATTAAAATAACTTCTTCT 735 |||| | ||||| | ||| ||| ||||| | || | |||||| | ||||||||||||| Sbjct 533 ACCACAGTATTCAACTTGCGATGTATCA-AATTGACTATGTTGCTCAAATAACTTCTTCC 591 Query 736 GCAAGTAATGGGCATTCTCCCGGGTGTGCTTTACAAGTGTCGTTGTATCTTTTTCCTCAC 795 |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 592 GCAAGTAATGGGTATTCTCCAGGGTGTGCTTTACAAGTGTCGTTGAATCTTTTTCCTCAC 651 Query 796 GACGAG--AC-TGATATCGAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTC 852 |||||| | |||||||||||||| |||||||||||||||||||||||| ||||| || Sbjct 652 GACGAGCCTCATGATATCGAAGAAGTGGTTCAAGTCTCGTTTGACGAGACCGCTAATATC 711 Query 853 TGTTTGGGACCCGCAAGCAAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAG 912 ||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||| Sbjct 712 TGTTTGGGACCAGCAAGCAAGCTCGTGGTCAAGTCCTTAACCAGGGAAATATACGACAAG 771 Query 913 ATTAATTATACAGGCGAAAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATA 972 ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 772 ATTAATTATACAGGCGAAAGATGCACAATTTGTCTGGAAGAGTTTAACAATGGAGGAAGA 831 Query 973 CTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAG 1032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 CTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAG 891 Query 1033 ACCAATCACTTTTGTCCATTGTGTCGTTACGAGTTGCCACGCGAAGAAGATCAATGA 1089 ||||||||| |||||||| |||||||||||||||||||| | |||||||| |||||| Sbjct 892 ACCAATCACGTTTGTCCACTGTGTCGTTACGAGTTGCCATGTGAAGAAGAGCAATGA 948 Score = 329 bits (178), Expect = 2e-89 Identities = 299/356 (84%), Gaps = 13/356 (4%) Strand=Plus/Plus Query 125 TACGCGTGGATTTCAGTCACAAAATCAAAGACGATCCTAAACCAGAAGAAGCGGGCATAA 184 ||||| |||||| || ||||||||||||| | |||||| |||||||||| ||||||| || Sbjct 14 TACGCTTGGATTACAATCACAAAATCAAACATGATCCTGAACCAGAAGATGCGGGCACAA 73 Query 185 TTATAGTCAATGCAATGATCTACCGTGAAACTGATACCTTGACTTTGACGACGTCGTCGT 244 ||| | ||||||||| | ||| ||||||| |||||| |||||| | ||||||| |||| Sbjct 74 TTAGAATCAATGCAAGGGTCTTCCGTGAAGCTGATATCTTGACATACACGACGTTTTCGT 133 Query 245 CTGCCGACGAACTCATCAGCGATGATGGCAACGAGTGTCAAATCAAAATGGATTTGATTA 304 | ||||||||||||||| | ||| | | | ||||||| |||| ||| ||||||| Sbjct 134 TTCCCGACGAACTCATCA---ACGAT-G--A--A-TGTCAAAGCAAAGTGGTTTTGATTC 184 Query 305 ATATCTTGAAGGTAGCAGGGCTCAGCGACTACGATACTGCACATATGATGTATCACTTTA 364 || ||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 185 ATCTCTTGAAGGAAGCTGGGATGAGCGACTACGATACTGCACATATGATGTATCACTTTA 244 Query 365 TTCCCCATGTTGCTGAAATAA-TGTCTTCCCCAAGTGAAGGGTATTCTCCAGGGTCTGCT 423 || ||||||||||||||| | |||||| |||||||||||||||||||||||| |||| Sbjct 245 TTGGTTATGTTGCTGAAATAACT-TCTTCCGCAAGTGAAGGGTATTCTCCAGGGTGTGCT 303 Query 424 TTAGAAGTGTCGT-GGTGTCTTCTTCTTCTCGATGTGAGTCATATTGAGGCAGCGG 478 ||||||||||||| || |||||||||| |||||| |||| ||||||| | ||||| Sbjct 304 TTAGAAGTGTCGTTGGA-TCTTCTTCTTATCGATGAGAGTTATATTGAAGAAGCGG 358 > Ahg920819 jgi|Araly1|920819|scaffold_102100.1 Length=1075 Score = 309 bits (167), Expect = 3e-83 Identities = 238/272 (88%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 811 GAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTCTGTTTGGGACCCGCAAGC 870 |||||||| || ||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct 780 GAAGAAGCGGTACAAATCTCGTTTGACGAGACCACTAACATCTGTTTGAGACCCGCAAGC 839 Query 871 AAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAGATTAATTATACAGG-CGA 929 | ||||||||||||||||||||||||||||||| || ||||||| | ||| || | | Sbjct 840 GAGGTCGTGGTCAAGTCCTTAACCAGGAAAATATACGAGAAGATTAGCTGTACTGGTC-A 898 Query 930 AAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATACTTGTGGCTTTACCTTG 989 || |||||||||||||||||| |||||||||| |||| ||| | ||||| |||||||||| Sbjct 899 AAAATGCACAATTTGTTTGGAGGAGTTTAACGATGGAAGAAGAGTTGTGACTTTACCTTG 958 Query 990 TGGACATGACTTTGACGATGAGTGTG-CCGTAAAGTGGTTTGAGACCAATCACTTTTGTC 1048 |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 959 TGGACATGACTTTGACGATGAGTGTGTCC-TAAAGTGGTTTGAGACCAATCACGATTGTC 1017 Query 1049 CAT-TGTGTCGTTACGAGTTGCCACGCGAAGA 1079 | | ||||||||| | |||||||| | ||||| Sbjct 1018 C-TCTGTGTCGTTTCAAGTTGCCATGTGAAGA 1048 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48149244171 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5