BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13228.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341444 jgi|Araly1|341444|fgenesh1_pg.C_scaffold_3001207 623 1e-177
Ahg920819 jgi|Araly1|920819|scaffold_102100.1 309 3e-83
> Ahg341444 jgi|Araly1|341444|fgenesh1_pg.C_scaffold_3001207
Length=948
Score = 623 bits (337), Expect = 1e-177
Identities = 514/597 (86%), Gaps = 22/597 (4%)
Strand=Plus/Plus
Query 510 GGATCCTGAACCAAAAGATTCCGGCGGCACAATCAGAGTCAATGCAGTGATCAAGAATGA 569
||||| ||||||| |||| | | |||||||||||||||| ||||| ||||| |||
Sbjct 357 GGATCTTGAACCAGAAGA-T--GCCGGCACAATCAGAGTCGATGCATTGATCTTCTGTGA 413
Query 570 AAATGATATCTTGACTTTCACGACTTTGACGTTTGTCAACGAATTCCTCAA-CCAAGAT- 627
| |||||||||||||||||||||||||| | | || |||||||||| | || | | |||
Sbjct 414 AGATGATATCTTGACTTTCACGACTTTGTCCTCTGCCAACGAATTCAT-AATCGATGATC 472
Query 628 -T----TTTGTC---TC---GTAGACTGGTGTAATTTCATGAAGGAAGCAGGGATCAGCG 676
| |||| | ||||||| | | ||||| |||| ||||||||||| ||||
Sbjct 473 GTGACGAGTGTCGAAGCAAAGTAGACTTGAATGATTTCTTGAAAGAAGCAGGGATTAGCG 532
Query 677 ACCAAAATATTCCAGTTGTGATTTATCATATTTTA-TATGTTATTAAAATAACTTCTTCT 735
|||| | ||||| | ||| ||| ||||| | || | |||||| | |||||||||||||
Sbjct 533 ACCACAGTATTCAACTTGCGATGTATCA-AATTGACTATGTTGCTCAAATAACTTCTTCC 591
Query 736 GCAAGTAATGGGCATTCTCCCGGGTGTGCTTTACAAGTGTCGTTGTATCTTTTTCCTCAC 795
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 592 GCAAGTAATGGGTATTCTCCAGGGTGTGCTTTACAAGTGTCGTTGAATCTTTTTCCTCAC 651
Query 796 GACGAG--AC-TGATATCGAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTC 852
|||||| | |||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 652 GACGAGCCTCATGATATCGAAGAAGTGGTTCAAGTCTCGTTTGACGAGACCGCTAATATC 711
Query 853 TGTTTGGGACCCGCAAGCAAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAG 912
||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 712 TGTTTGGGACCAGCAAGCAAGCTCGTGGTCAAGTCCTTAACCAGGGAAATATACGACAAG 771
Query 913 ATTAATTATACAGGCGAAAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATA 972
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 772 ATTAATTATACAGGCGAAAGATGCACAATTTGTCTGGAAGAGTTTAACAATGGAGGAAGA 831
Query 973 CTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CTTGTGGCTTTACCTTGTGGACATGACTTTGACGATGAGTGTGCCGTAAAGTGGTTTGAG 891
Query 1033 ACCAATCACTTTTGTCCATTGTGTCGTTACGAGTTGCCACGCGAAGAAGATCAATGA 1089
||||||||| |||||||| |||||||||||||||||||| | |||||||| ||||||
Sbjct 892 ACCAATCACGTTTGTCCACTGTGTCGTTACGAGTTGCCATGTGAAGAAGAGCAATGA 948
Score = 329 bits (178), Expect = 2e-89
Identities = 299/356 (84%), Gaps = 13/356 (4%)
Strand=Plus/Plus
Query 125 TACGCGTGGATTTCAGTCACAAAATCAAAGACGATCCTAAACCAGAAGAAGCGGGCATAA 184
||||| |||||| || ||||||||||||| | |||||| |||||||||| ||||||| ||
Sbjct 14 TACGCTTGGATTACAATCACAAAATCAAACATGATCCTGAACCAGAAGATGCGGGCACAA 73
Query 185 TTATAGTCAATGCAATGATCTACCGTGAAACTGATACCTTGACTTTGACGACGTCGTCGT 244
||| | ||||||||| | ||| ||||||| |||||| |||||| | ||||||| ||||
Sbjct 74 TTAGAATCAATGCAAGGGTCTTCCGTGAAGCTGATATCTTGACATACACGACGTTTTCGT 133
Query 245 CTGCCGACGAACTCATCAGCGATGATGGCAACGAGTGTCAAATCAAAATGGATTTGATTA 304
| ||||||||||||||| | ||| | | | ||||||| |||| ||| |||||||
Sbjct 134 TTCCCGACGAACTCATCA---ACGAT-G--A--A-TGTCAAAGCAAAGTGGTTTTGATTC 184
Query 305 ATATCTTGAAGGTAGCAGGGCTCAGCGACTACGATACTGCACATATGATGTATCACTTTA 364
|| ||||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 185 ATCTCTTGAAGGAAGCTGGGATGAGCGACTACGATACTGCACATATGATGTATCACTTTA 244
Query 365 TTCCCCATGTTGCTGAAATAA-TGTCTTCCCCAAGTGAAGGGTATTCTCCAGGGTCTGCT 423
|| ||||||||||||||| | |||||| |||||||||||||||||||||||| ||||
Sbjct 245 TTGGTTATGTTGCTGAAATAACT-TCTTCCGCAAGTGAAGGGTATTCTCCAGGGTGTGCT 303
Query 424 TTAGAAGTGTCGT-GGTGTCTTCTTCTTCTCGATGTGAGTCATATTGAGGCAGCGG 478
||||||||||||| || |||||||||| |||||| |||| ||||||| | |||||
Sbjct 304 TTAGAAGTGTCGTTGGA-TCTTCTTCTTATCGATGAGAGTTATATTGAAGAAGCGG 358
> Ahg920819 jgi|Araly1|920819|scaffold_102100.1
Length=1075
Score = 309 bits (167), Expect = 3e-83
Identities = 238/272 (88%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 811 GAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTCTGTTTGGGACCCGCAAGC 870
|||||||| || ||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct 780 GAAGAAGCGGTACAAATCTCGTTTGACGAGACCACTAACATCTGTTTGAGACCCGCAAGC 839
Query 871 AAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAGATTAATTATACAGG-CGA 929
| ||||||||||||||||||||||||||||||| || ||||||| | ||| || | |
Sbjct 840 GAGGTCGTGGTCAAGTCCTTAACCAGGAAAATATACGAGAAGATTAGCTGTACTGGTC-A 898
Query 930 AAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATACTTGTGGCTTTACCTTG 989
|| |||||||||||||||||| |||||||||| |||| ||| | ||||| ||||||||||
Sbjct 899 AAAATGCACAATTTGTTTGGAGGAGTTTAACGATGGAAGAAGAGTTGTGACTTTACCTTG 958
Query 990 TGGACATGACTTTGACGATGAGTGTG-CCGTAAAGTGGTTTGAGACCAATCACTTTTGTC 1048
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 959 TGGACATGACTTTGACGATGAGTGTGTCC-TAAAGTGGTTTGAGACCAATCACGATTGTC 1017
Query 1049 CAT-TGTGTCGTTACGAGTTGCCACGCGAAGA 1079
| | ||||||||| | |||||||| | |||||
Sbjct 1018 C-TCTGTGTCGTTTCAAGTTGCCATGTGAAGA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5