BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13229.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478708 jgi|Araly1|478708|fgenesh2_kg.3__1409__AT3G13229.1 1561 0.0
> Ahg478708 jgi|Araly1|478708|fgenesh2_kg.3__1409__AT3G13229.1
Length=1075
Score = 1561 bits (845), Expect = 0.0
Identities = 1005/1080 (93%), Gaps = 19/1080 (2%)
Strand=Plus/Plus
Query 90 AGTTCGTTTCACCAAACAAATTAAGGTCATCAA-ATTTTCTCTTGAG-AACAATTC-AGA 146
|||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| || |||
Sbjct 1 AGTTCGTTTCACCAAACAAATTCAGGTCGGCAAGATTTTCTCTTGAGAAACAA-TCAAGA 59
Query 147 GTTCTTAAATCTCCAGATGACAATCAAAAACCTGAGGCCAAGCCTGTGGGTTTTGTTCAT 206
||||||||||||||| |||||||| | | |||||||||||||||| ||||||||||||||
Sbjct 60 GTTCTTAAATCTCCAAATGACAATTATATACCTGAGGCCAAGCCTTTGGGTTTTGTTCAT 119
Query 207 ACCTCGTTCAGACCGATAAAGATTTCAAGAAACAACACAACGTACGAGAAATGTTTAATC 266
|||| || | ||| |||||||||| |||| || | ||||| ||||||||||||||||||
Sbjct 120 GCCTCATTTATACCTATAAAGATTTTAAGACAC-A-ACAACTTACGAGAAATGTTTAATC 177
Query 267 AATCCAGCTCTGTCTCGTTAATCTACGTAGTTGAAATCGCCAAAAC-ACCACAAAACGTA 325
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 178 AATCCAGCTCTGTCTCGTTACTCTACGTAGTTGAAATCGCCAAAACTA-CACAAAACGTA 236
Query 326 GACGTCACTTGGTCTAAAACCACCTCCTCACATTCTTTAACCATCAAAATCGAGAA-CGT 384
|||||||||||||| ||||||| || |||||||| || ||||||||||||||||| | |
Sbjct 237 GACGTCACTTGGTCCAAAACCATGTCATCACATTCCTTGACCATCAAAATCGAGAATC-T 295
Query 385 CAAAGACGAGCAACAGAATCATCATCAACCGGTGAAGATAGATCTTTCAGGTTCTTCGTT 444
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CAAAGACGAGCAACATAATCATCATCAACCGGTGAAGATAGATCTTTCAGGTTCTTCGTT 355
Query 445 TTGGGCCAAAAAGGGTCTCAAGAGCTTAGAAGCTAACGGAACTAGAGTCGACGTATACTG 504
||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 356 TTGGGCCAAAAAGGGTCTCAAGAGCTTAGAAGCTAACGGGGCTAGGGTTGACGTATACTG 415
Query 505 GGATTTTCGTCAAGCCAAATTCTCGAACTTCCCTGAACCTTCCTCTGGCTTCTACGTCTC 564
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 416 GGATTTTCGTCAGGCCAAATTCTCAAACTTCCCTGAACCTTCCTCTGGCTTCTACGTCTC 475
Query 565 TCTCGTATCCCAAAACGCAACCGTTTTAACGATCGGGGATTTAAGGAACGAAGCTTTAAA 624
|||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||
Sbjct 476 TCTCGTATCCCAAAACGCAACCATTTTAACGATGGGGGATTTAAAGAACGAAGCTTTGAA 535
Query 625 GAGGACGAAGAAGAACCCTTCAGCTACAGAAGCTGCCTTGGTCTCCAAGCAAGAACACGT 684
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 536 GAGGACAAAGAAGAACCCTTCAGCCACAGAAGCTGCCTTGGTCTCCAAGCAAGAACACGT 595
Query 685 CCACGGGAAACGCGTTTTCTACACGCGGACGGCGTTTGGCGGTGGGGAGTCGAGGCGGGA 744
|||||| ||||| |||||||||||||||||||||||||| ||||| |||||| | |||||
Sbjct 596 CCACGGAAAACGTGTTTTCTACACGCGGACGGCGTTTGGTGGTGGAGAGTCGCGTCGGGA 655
Query 745 GAATGAGGTGGTGATCGAAACATCTCTGTCGGGTCCTAGCGATCCAGAGATGTGGATCAC 804
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAACGAGGTGGTGATCGAGACATCTCTGTCGGGTCCTAGCGATCCAGAGATGTGGATCAC 715
Query 805 GGTGGACGGTGTGCCGGCGATTAGGATCATGAATTTGAATTGGAGATTTAGAGGGAATGA 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GGTGGACGGTGTGCCGGCGATTAGGATCATGAATTTGAATTGGAGATTTAGAGGGAATGA 775
Query 865 GGTTGTGACTGTGAGTGATGGTGTTTCTTTGGAGATCTTTTGGGACGTTCATGATTGGCT 924
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GGTTTTGACTGTGAGTGATGGTGTTTCTTTGGAGATCTTTTGGGACGTTCATGATTGGCT 835
Query 925 GTTTGAACCCTCTGGTTCGTCTAGTGGGTTGTTTGTTTTCAAGCCTAAAGCTGGATTTGA 984
||||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 836 GTTTGAAACATCCGGTTCGTCTAGTGGGTTGTTTGTTTTCAAGCCTAAAGCTGGATTCGA 895
Query 985 ATCTAAATGTCTTAGTTTTAATGGTGGCTATGGTGATGGTGAAGGTGAGGATCATGATGT 1044
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATCTAAAAGTCTTAGCTTTAATGGTGGCTATGGTGATGGTGAAGGTGAGGATCATGATGT 955
Query 1045 GGAAGATGACGATTCGTCGCCCAAGTATTGTCATGTCCTATATGCCGTCAAAGAACTAGA 1104
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 956 GGAAGATGACGATTCGTCGCCCAAGTATTGTCATGTTCTATATGCTGTCAAAGAACTAGA 1015
Query 1105 ATTTCCATGT---C-a----aaaaaaTT-AGTTTTGTCAGGTAGTTAATTATTTAGCATA 1155
|||||||||| | | |||||||| ||||| ||||| ||||||||| |||||||||
Sbjct 1016 ATTTCCATGTGGACCATGTCAAAAAATTTAGTTTCGTCAGCTAGTTAATTGTTTAGCATA 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5