BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13230.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929064 jgi|Araly1|929064|scaffold_301521.1 1131 0.0
Ahg337656 jgi|Araly1|337656|fgenesh1_pg.C_scaffold_1004221 375 2e-103
> Ahg929064 jgi|Araly1|929064|scaffold_301521.1
Length=689
Score = 1131 bits (612), Expect = 0.0
Identities = 663/688 (96%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 92 TAATT-T-ACCATAGAAGAAATGGCAGAGTCTACTCAGATGGAAGTTGAGACAGCAACAG 149
||||| | || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2 TAATTATCACAATTGAAGAAATGGCAGAGTCTACTCAGATGGAAGTTGAGACTGCAACAG 61
Query 150 AAGGAACTGTGCCATTGCCGCCTAAACCAACCTTCAAGCCTTTGAAAGCTCATGAAATGT 209
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 62 GAGGAACTGTGCCATTGCCGCCTAAACCAACATTCAAGCCTTTGAAAGCTCATGAAATGT 121
Query 210 CTGATGGTAAAGTCCAGTTCAGGAAAATAGCTGTACCACCAAACCGATACTCGCCTCTCA 269
||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 122 CTGATGGTAAAGTTCAATTCAGGAAAATATCCGTACCACCAAACCGATACTCGCCTCTCA 181
Query 270 AGAAAGCATGGTTGGATATCTACACACCCATTTACGATCAGATGAAGGTTGACATAAGGA 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 182 AGAAAGCATGGTTGGATATCTACACACCCATTTACGATCAGATGAAGGTTGACATTAGGA 241
Query 330 TGAATCTCAAAGCCCGCAAAGTCGAGCTTAAAACCCGAGCTGACACTCCCGACATCAGTA 389
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 242 TGAATCTCAAAGCCCGCAAAGTCGAGCTTAAAACCCGAGCTGACACTCCCGATATCAGTA 301
Query 390 ATCTTCAGAAGTCTGCGGATTTTGTACACGCTTTCATGCTTGGTTTTGATATCCCTGATG 449
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 302 ATCTCCAGAAGTCTGCGGATTTTGTACACGCTTTCATGCTGGGTTTTGATATCCCTGATG 361
Query 450 CTATCTCTCTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGA 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CTATCTCTCTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGA 421
Query 510 AGACTCTTAAAGGTGAGCATTTGTCTAGAGCCATTGGTAGGTTGTCTGGTAAAGGAGGGA 569
|||||||||||||||||||||||||| |||| || || || |||||||||||||||||||
Sbjct 422 AGACTCTTAAAGGTGAGCATTTGTCTCGAGCTATCGGGAGATTGTCTGGTAAAGGAGGGA 481
Query 570 AGACAAAGTTTGCTATTGAGAACTCGACCAAGACGAGGATTGTGATTGCAGACACTAGGA 629
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 AGACAAAGTTTGCTATTGAGAACTCCACCAAGACGAGGATTGTGATTGCAGACACTAGGA 541
Query 630 TTCATATTTTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGAGTTCACTTTGCAGTCTTA 689
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 542 TTCATATTTTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGGGTTCACTTTGCAGTCTTA 601
Query 690 TTATGGGATCTCCTGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCTAGATTGA 749
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTATGGGATCTCCCGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTGCTAGATTGA 661
Query 750 ACGAATAGTTTTGAATGGCGAAATTTTG 777
|||||||||||||||||| || ||||||
Sbjct 662 ACGAATAGTTTTGAATGGTGATATTTTG 689
> Ahg337656 jgi|Araly1|337656|fgenesh1_pg.C_scaffold_1004221
Length=603
Score = 375 bits (203), Expect = 2e-103
Identities = 304/353 (86%), Gaps = 6/353 (2%)
Strand=Plus/Plus
Query 398 AAGTCTGCGGATTTTGTACACGCTTTCATGCTTGGTTTTGATATCCCTGATGCTATCTCT 457
|||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||| |||
Sbjct 238 AAGTCTGCGGATTTCGTACACGCTTTCATGCTCGGTTTCGATATCCCCGACGCTATTTCT 297
Query 458 CTTTTGAGAATGGACGAGCTTTATGTTGAGTCTTTTGAGATCAAGGATGTGAAGACTCTT 517
||| || ||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTTCTGCGAATGGATGAACTGTATGTTGAGTCTTTTGAGATCAAGGATGTGAAGACTCTT 357
Query 518 AAAGGTGAGCATTTGTCTAGAGCCATTGGTAGGTTGTCTGGTAAAGGAGGGAAGACAAAG 577
||||| ||||| |||| |||| || |||| |||||||| |||||||| ||||| |||
Sbjct 358 AAAGGCAAGCATCTGTCCCGAGCTATCAGTAGATTGTCTGGGAAAGGAGGAAAGACGAAG 417
Query 578 TTTGCTATTGAGAACTCGACCAAGACGAGGATTGTGATTGCAGACACTAGGATTCATATT 637
|||||||||||||| || || ||||| |||||||||||||||||||| | |||||||||
Sbjct 418 TTTGCTATTGAGAATTCTACAAAGACAAGGATTGTGATTGCAGACACAAAGATTCATATC 477
Query 638 TTGGGAGCTTTCTCTAATATTAAAGTCGCAAGGAG-TTCACTT-TGCAGTCTTATTATGG 695
|| |||||||||||||| | ||||||||| ||| | ||| || ||| ||||||||||||
Sbjct 478 TTAGGAGCTTTCTCTAACAGTAAAGTCGCGAGG-GCTTCG-TTGTGCGGTCTTATTATGG 535
Query 696 GATCTCCTGCTGGGAAAGTTTACTCTAAGCTCAGATCTGTCTCTG-CTAGATT 747
||||||| ||||| || |||||||| |||||| || | ||||||| | |||||
Sbjct 536 GATCTCCAGCTGGTAAGGTTTACTCCAAGCTCCGAGCAGTCTCTGTC-AGATT 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5