BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13235.1 Length=1586 Score E Sequences producing significant alignments: (Bits) Value Ahg897459 jgi|Araly1|897459|Al_scaffold_0005_1425 298 9e-80 Ahg905064 jgi|Araly1|905064|Al_scaffold_0003_2192 163 3e-39 Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850 73.1 6e-12 > Ahg897459 jgi|Araly1|897459|Al_scaffold_0005_1425 Length=627 Score = 298 bits (161), Expect = 9e-80 Identities = 179/188 (95%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 811 GATTGCTGAGACTTATGGACCAACGCTACAAAGGTATTGCCCATGGTGTTGGCCAAACAG 870 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct 104 GATTGCTGAGACTTATGGATCAACGCTATAAAGGTATTGCCCATGGTGTTGGCCAGTCAG 163 Query 871 AGATATTGGGCCGCATTCATGTTGCTCCTATCAAGATTGGAAACAACTTTTACCCTTGTT 930 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct 164 AGATATTGGGCCGCATTCATGTTGCTCCTATCAAGATCGGAAATAACTTTTACCCGTGTT 223 Query 931 CATTCGTGGTGCTGGACTCACCTAACATGGAATTTCTGTTTGGCCTGGATATGCTGCGTA 990 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 224 CATTCGTGGTGCTGGACTCACCTAACATGGAATTTCTATTTGGCCTGGATATGTTGCGTA 283 Query 991 AGCATCAG 998 |||||||| Sbjct 284 AGCATCAG 291 > Ahg905064 jgi|Araly1|905064|Al_scaffold_0003_2192 Length=354 Score = 163 bits (88), Expect = 3e-39 Identities = 106/114 (93%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 1026 ATGACTGTTGGAGGAGGAGAGGTCTCGGTTCCCTTTTTGCAAGAGAAAGACATCCCGTCC 1085 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1 ATGACTGTT---GGAGGAGAGGTCTCGGTTCCCTTTTTGCAAGAGAAAGATATCCCTTCC 57 Query 1086 CGATTTCTGGATGAAGAGCGTGTTCCAAATGATGCATCTAGCTCTGGAGCAACG 1139 ||||||||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 58 CGATTTCTGGATGAAGAACGTGTACCGAATGATGCATCTAGCTCTGGAGCAACG 111 > Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850 Length=1026 Score = 73.1 bits (39), Expect = 6e-12 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 457 AGAATGATCCTGAGCTTGCACAAGTGATTTCTGGAAGCGATTTAA 501 |||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 101 AGAATGATACTGAGCTTGCACAAGTGATTTCTGGAAGGGATTTAA 145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59420782200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5