BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13235.1

Length=1586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897459 jgi|Araly1|897459|Al_scaffold_0005_1425                    298    9e-80
  Ahg905064 jgi|Araly1|905064|Al_scaffold_0003_2192                    163    3e-39
  Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850          73.1    6e-12


> Ahg897459 jgi|Araly1|897459|Al_scaffold_0005_1425
Length=627

 Score =  298 bits (161),  Expect = 9e-80
 Identities = 179/188 (95%), Gaps = 0/188 (0%)
 Strand=Plus/Plus

Query  811  GATTGCTGAGACTTATGGACCAACGCTACAAAGGTATTGCCCATGGTGTTGGCCAAACAG  870
            ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  |||
Sbjct  104  GATTGCTGAGACTTATGGATCAACGCTATAAAGGTATTGCCCATGGTGTTGGCCAGTCAG  163

Query  871  AGATATTGGGCCGCATTCATGTTGCTCCTATCAAGATTGGAAACAACTTTTACCCTTGTT  930
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct  164  AGATATTGGGCCGCATTCATGTTGCTCCTATCAAGATCGGAAATAACTTTTACCCGTGTT  223

Query  931  CATTCGTGGTGCTGGACTCACCTAACATGGAATTTCTGTTTGGCCTGGATATGCTGCGTA  990
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct  224  CATTCGTGGTGCTGGACTCACCTAACATGGAATTTCTATTTGGCCTGGATATGTTGCGTA  283

Query  991  AGCATCAG  998
            ||||||||
Sbjct  284  AGCATCAG  291


> Ahg905064 jgi|Araly1|905064|Al_scaffold_0003_2192
Length=354

 Score =  163 bits (88),  Expect = 3e-39
 Identities = 106/114 (93%), Gaps = 3/114 (3%)
 Strand=Plus/Plus

Query  1026  ATGACTGTTGGAGGAGGAGAGGTCTCGGTTCCCTTTTTGCAAGAGAAAGACATCCCGTCC  1085
             |||||||||   |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  1     ATGACTGTT---GGAGGAGAGGTCTCGGTTCCCTTTTTGCAAGAGAAAGATATCCCTTCC  57

Query  1086  CGATTTCTGGATGAAGAGCGTGTTCCAAATGATGCATCTAGCTCTGGAGCAACG  1139
             ||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct  58    CGATTTCTGGATGAAGAACGTGTACCGAATGATGCATCTAGCTCTGGAGCAACG  111


> Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850
Length=1026

 Score = 73.1 bits (39),  Expect = 6e-12
 Identities = 43/45 (96%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  457  AGAATGATCCTGAGCTTGCACAAGTGATTTCTGGAAGCGATTTAA  501
            |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct  101  AGAATGATACTGAGCTTGCACAAGTGATTTCTGGAAGGGATTTAA  145



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59420782200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5