BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13275.1

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929066 jgi|Araly1|929066|scaffold_301523.1                        346    1e-94


> Ahg929066 jgi|Araly1|929066|scaffold_301523.1
Length=253

 Score =  346 bits (187),  Expect = 1e-94
 Identities = 216/230 (94%), Gaps = 2/230 (1%)
 Strand=Plus/Plus

Query  189  agaatcagaggaagaagaagaTGTGTTGTGGACGGATTTGCATGCTGTGCACGTGTTTGC  248
            |||| || |||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AGAAACAAAGGGGGAAGAAGATGTGTTGTGGACGGATTTGCATGCTGTGCACGTGTTTGC  60

Query  249  TTCTTGTGGTGATCGCGATTGGGTTTCTATTTGGATTCGGTGTCTTCAAGGATGGATTTC  308
            | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   TCCTGGTGGTGATCGCGATTGGGTTTCTATTCGGATTCGGTGTCTTCAAGGATGGATTTC  120

Query  309  ACAAGATCCATGAATCAATTCATCTCGAATGCGATCCCAGATTTGGTTGCGGCGGTGGCC  368
            |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  ACAAGATCCAAGAATCAGTTCATCTCGAATGCGATCCCAGATTTAGTTGCGGCGGTGGCC  180

Query  369  TTGGACGTCGCGGTTATGGTTTCCCAGCTCC-GGCCGGTGGTTTTAATTA  417
            |||||||||||||||| |||||||||||||| ||| |||||| |||||||
Sbjct  181  TTGGACGTCGCGGTTACGGTTTCCCAGCTCCCGGC-GGTGGTATTAATTA  229



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23788700208


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5