BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13310.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478714 jgi|Araly1|478714|fgenesh2_kg.3__1415__AT3G13310.1 1170 0.0
> Ahg478714 jgi|Araly1|478714|fgenesh2_kg.3__1415__AT3G13310.1
Length=793
Score = 1170 bits (633), Expect = 0.0
Identities = 746/799 (93%), Gaps = 14/799 (2%)
Strand=Plus/Plus
Query 1 ATATAAGTCTttctcactccttctctttcctttgtgattcatatccttcttcttctccaa 60
||||||| |||||||| ||| |||||||||||||||||||||||||| |||| || |
Sbjct 1 ATATAAGCCTTTCTCAATCCCTCTCTTTCCTTTGTGATTCATATCCTACTTC-TC-ATAC 58
Query 61 gaacctctctctctttctgcttctctatattttaacactttcttcCGAATTTGCCCCTCA 120
||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 59 GAA-CT-TCTCTCTCTCTGCTTCTCTAAATTTTAACACTTTCTTCCGAATTTGCCCCTCA 116
Query 121 AGTTTTATTTTAATTGCTAAAATGGCTGGAACCCTAGTTAACTCCGCCGGGAGATTCTCA 180
|||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 117 AGTTTTATTTTAATTGCTTAAATGGCCGGAACCCTAGTTTACTCCGCCGGGAGATTCTCA 176
Query 181 CCGGGAAATTGTATTCTTCCTCAACAGAGAACAGCCAGATTCTACAGCGGAACCGCGAGA 240
|||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 177 CCGGGAAATTGTCTTCTTCCCCAACCGAAAACAGCCAGATTCTACAGCGGAACCGCGAGA 236
Query 241 TTTCCCACCGGAGCTCCGTCGTTTAAGGCTTCAGCTCAGACGCTTAACGCCGAGCCAGCT 300
|||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 237 TTTCCCACAGGAGCTGCGTCGTTTAAGGCTTCGGCTCAGACGCTTAACGCCGAGCCAGCT 296
Query 301 GTAACGGAATCCGTTCGTCGGAGAGTTTCTAGCCTCTACGAATTACTGAAAGTGAATGAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTAACGGAATCCGTTCGTCGGAGAGTTTCTAGCCTCTACGAATTACTGAAAGTGAATGAT 356
Query 361 ACGGCGTCCTTGACGGAGATCAAGACGGCGTACCGGAGCTTAGCTAAAGTATATCATCCA 420
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 ACGGCGTCGTTGACGGAGATCAAGACGGCCTACCGGAGCTTAGCTAAAGTATATCATCCA 416
Query 421 GATGCGTCGGAATCGGACGGTCGAGATTTTATGGAGATTCACAAAGCTTACGCGACACTT 480
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 GATGCGTCGGAATCGGACGGTCGAGATTTCATGGAGATTCACAAAGCTTACGCGACACTG 476
Query 481 GCGGATCCGACTACAAGAGCGATTTACGACTCGACGCTTAGAGTACCACGGAGACGGGTA 540
||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct 477 GCGGATCCGACTACAAGAGCGATCTACGACTCGACGCTTAGAGCACCTCGGAGACGGGTA 536
Query 541 CACGCCGGAGCGATGGGTCGGTCGGGGCGGGTTTACGCTACGACCCGGAGATGGGAGACG 600
||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 537 CACGCTGGAGCGATGGGTCGGTCGGGTCGGGTTTACACGACGACCCGGAGATGGGAGACG 596
Query 601 GATCAGTGTTGGTGATTTTAGG-CTTCCTATGATTTTGCAGCAGCGAAAGGGCACTTTTT 659
||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 597 GATCAGTGTTGGTAATTTTAGCACTTCCGATGATTTTGCAGCAGCGAAAGGGCACTTTTT 656
Query 660 GACTTACTTT--CCCCTTTGATTACGtttttttttttCCTTGTCATATCTTTGGAAAATT 717
|||||| ||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||
Sbjct 657 GACTTATTTTTTCCCCTTTCATTACTTTTTTTTTTTTCCT-GTCATAACTTTGGAAAATT 715
Query 718 AAGGGGAAATTAA--GTTTAATCCGCTCttttttt-ttgtt-tttcttttAACTTAAGCA 773
||||||||||||| |||||||||||||||||||| || || ||| |||||||||||| |
Sbjct 716 AAGGGGAAATTAAAAGTTTAATCCGCTCTTTTTTTGTT-TTGTTT-TTTTAACTTAAGAA 773
Query 774 GTTAACAATGTATAAAGAA 792
|||||||||||||||||||
Sbjct 774 GTTAACAATGTATAAAGAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5