BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13320.1
Length=2120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929070 jgi|Araly1|929070|scaffold_301527.1 2379 0.0
Ahg914699 jgi|Araly1|914699|Al_scaffold_0001_4953 1424 0.0
Ahg474631 jgi|Araly1|474631|fgenesh2_kg.1__4585__AT1G55720.1 1044 0.0
> Ahg929070 jgi|Araly1|929070|scaffold_301527.1
Length=1366
Score = 2379 bits (1288), Expect = 0.0
Identities = 1340/1366 (98%), Gaps = 0/1366 (0%)
Strand=Plus/Plus
Query 421 TGTGTTGGTAGCACAAGGGTATGAGTTGTTGTAAAGTGCCAGTTCTTATTGAAGCACAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTGTTGGTAGCACAAGGGTATGAGTTGTTGTAAAGTGCCAGTTCTTATTGAAGCACAAG 60
Query 481 TTGAAATGGTGTCGGCTAATGAACTTGAGAACAAAAGCCTATTTAGGCAAGAAGAAGATG 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TTGAAATGGTGTCGGCTAATGAACTTGAGAACAAAAGCCTATTTAGACAAGAAGAAGATG 120
Query 541 CCACACAAACTAAAGAAGCTTCTTTAATGGAGCAAGGATCACTTTCTACAAGTTTCCCCC 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CCGCACAAACTAAAGAAGCTTCTTTAATGGAGCAAGGATCACTTTCTACAAGTTTTCCCC 180
Query 601 AGCACACGCCTAAAGCACCAAAGAACAGCGTACTTAATAGCATAAAGATCGTGATTTTTT 660
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 AACACACGCCTAAAGCACCAAAGAATAGCGTACTTAATAGCATAAAGATCGTGATTTTTT 240
Query 661 GTAATAAACTCAATCTACTACTACCTTTCGGTCCTCTAGCCATATTGGTCCACTACATGA 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTAATAAACTCAATCTACTATTACCTTTCGGTCCTCTAGCCATATTGGTCCACTACATGA 300
Query 721 TAGATAGTAAGGGGTGGGTGTTCTTGCTGACGTTAGTAGGCATTACACCATTGGCTGAAC 780
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TAGATAGTAAGGGGTGGGTGTTCTTGCTGACCTTAGTAGGCATTACACCATTGGCTGAAC 360
Query 781 GTCTAGGATATGCCACAGAGCAACTGGCTTGTTACACGGGTCCAACTGTTGGAGGCCTCT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCTAGGATATGCCACAGAGCAACTGGCTTGTTACACGGGTCCAACTGTTGGAGGCCTCC 420
Query 841 TAAATGCTACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCTTTGAAAAATG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAAATGCTACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCTTTGAAAAATG 480
Query 901 GAATGATACGTGTTGTTCAGCTGACGTTACTAGGCTCAATTCTGTCTAACATGTTACTTG 960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 481 GAATGATACGTGTTGTTCAGCTGACGTTACTAGGCTCGATTCTGTCTAACATGTTGCTTG 540
Query 961 TACTTGGCTGCGCCTTCTTTTGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTG 1020
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 541 TACTTGGCTGCGCCTTCTTTTGCGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTATTTG 600
Query 1021 ACAAAGGAATTGCTACTGTGAATTCAGGATTGCTTTTGATGGCTGTCATGGGGATACTCT 1080
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAAAGGAATTGCAACTGTGAATTCAGGATTGCTTTTGATGGCTGTCATGGGGATACTCT 660
Query 1081 TCCCGGCTGTTCTTCACTACACCCATAGCGAGGTTCATGCTGGATCATCAGAGCTAGCCC 1140
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 661 TCCCGGCTGTTCTTCATTACACCCATAGTGAGGTTCATGCCGGATCATCAGAGCTAGCCC 720
Query 1141 TGTCAAGGTTCAGCAGTTGCATAATGCTTATAGCTTATGCTGCTTACCTCTTCTTCCAGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTCAAGGTTCAGCAGTTGCATAATGCTTATAGCTTATGCTGCTTACCTCTTCTTCCAGT 780
Query 1201 TAAAGAGCCAATCTAATTCTTATAGCCCTCTCGATGAGGAATCAAATCAGAACGAAGAAA 1260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 TAAAGAGCCAATCTAATTCTTATAGCCCTCTTGATGAGGAATCAAATCAGAACGAAGAAA 840
Query 1261 CTTCTGCCGAAGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATTTGGCTTTCAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTCTGCCGAAGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATTTGGCTTTCAA 900
Query 1321 TATTGACTGCTTGGGTCTCTCTTCTTTCTGGCTATCTTGTTGATGCCATAGAGGGTGCCT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TATTGACTGCTTGGGTCTCTCTTCTTTCTGGCTATCTTGTTGATGCCATAGAGGGTGCCT 960
Query 1381 CAGTCTCATGGAATATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGA 1440
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAGTCTCATGGAACATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGA 1020
Query 1441 ACGCAGCTGAACATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACGCAGCTGAACATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTT 1080
Query 1501 TGGGAGTGGCTATTGGGTCCTCGATCCAGATTTCCATGTTTGCGGTCCCATTCTGCGTGG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1081 TGGGAGTGGCTATTGGGTCCTCGATCCAGATTTCCATGTTTGCGGTCCCATTCTGTGTGG 1140
Query 1561 TGATTGGATGGATGATGGGTCAACAGATGGACCTTAACTTCCAGCTTTTTGAGACGGCGA 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGATTGGATGGATGATGGGTCAACAGATGGACCTTAACTTCCAGCTTTTTGAGACGGCGA 1200
Query 1621 TGCTGTTCATCACTGTTATAGTAGTAGCATTTTTTCTCCAGGAAGGGTCATCGAATTACT 1680
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1201 TGCTGTTCATCACCGTTATAGTAGTAGCTTTTTTTCTCCAGGAAGGGTCATCAAATTACT 1260
Query 1681 TCAAAGGATTGATGCTGATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTACACG 1740
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCAAAGGATTGATGCTCATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTACACG 1320
Query 1741 AAGATCCTCACCAAGATGGTATATAAACCGGAAGAAGAGTCTGGTG 1786
|||||||||| |||||||||||||||||| || |||||||||||||
Sbjct 1321 AAGATCCTCATCAAGATGGTATATAAACCCGAGGAAGAGTCTGGTG 1366
> Ahg914699 jgi|Araly1|914699|Al_scaffold_0001_4953
Length=1326
Score = 1424 bits (771), Expect = 0.0
Identities = 1154/1339 (86%), Gaps = 26/1339 (2%)
Strand=Plus/Plus
Query 441 ATGAGTTGTTGTAAAGTGCCAGTTCTTATTGAAGCACAAGTTGAAATGGTGTCGGCTAAT 500
||| |||||||||| ||||||| ||||||| | || || || ||||||| || || ||||
Sbjct 1 ATGGGTTGTTGTAAGGTGCCAGCTCTTATTCAGGCGCAGGTAGAAATGGGGTTGGTTAAT 60
Query 501 GAACTTGAGAACAAAAGCCTATTTAGGCAAGAAGA-AGATGCCACACAAACTAAAGAAGC 559
|| ||||| |||||||||| ||||| | || | | |||| || |||||| |||| |||
Sbjct 61 GATGTTGAGCACAAAAGCCTTTTTAGACGAG-ATACAGATTCCCCACAAAGAAAAGCAGC 119
Query 560 TTCTTTAATGGAGCAAGGATCACTTTCTACAAGTTTCCCCCAGCACACGC--CTAAAGCA 617
||| || ||||| ||||||||||||||| ||||||| | || || ||| ||||| ||
Sbjct 120 TTCCTTGATGGAACAAGGATCACTTTCTGCAAGTTT--TCGAGAACGCGCAACTAAAACA 177
Query 618 CCAAAGAACAGCGTACTTA-ATAGCATAAAGATCGTGATTTT-TTGTAATAAACTCAATC 675
|| | |||||| || | || | ||| | |||||||||||||| | | |||||||||||||
Sbjct 178 CCTATGAACAGTGTGC-TACAGAGCTTCAAGATCGTGATTTTATCG-AATAAACTCAATC 235
Query 676 TACTACTACCTTTCGGTCCTCTAGCCATATTGGTCCACTACATGA-TAGATAGTAAGGGG 734
| | | ||||| ||||||||||| ||| | |||||||| ||| | |||| ||||||
Sbjct 236 TTTTGTTGCCTTTTGGTCCTCTAGCAATACTACTCCACTACTTGACT-GATAATAAGGGA 294
Query 735 TGGGTGTTCTTGCTGACG-TTAGTAGGCATTACACCATTGGCTGAACGTCTAGGATATGC 793
||| | ||||| |||| | ||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 295 TGGATCTTCTTACTGA-GCTTAGTAGGCATCACACCATTAGCTGAACGTCTCGGATATGC 353
Query 794 CACAGAGCAACTGGCTTGTTACACGGGTCCAACTGTTGGAGGCCTCTTAAATGCTACATT 853
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 354 CACAGAGCAATTGGCTTGTTACACGGGTCCAACTGTTGGAGGCCTCCTAAATGCTACATT 413
Query 854 CGGGAATGTGACAGAGCTGATCATATCAATTTTCGCT-TTGAAAAATGGAATGATACGTG 912
|| || |||||||||||||||||||| ||||||||| || ||||||||||||||||| |
Sbjct 414 TGGAAACGTGACAGAGCTGATCATATCGATTTTCGCTCTT-AAAAATGGAATGATACGCG 472
Query 913 TTGTTCAGCTGACGTTACTAGGCTCAATTCTGTCTAACATGTTACTTGTACTTGGCTGCG 972
|||| |||||||| | || ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 473 TTGTACAGCTGACACTGCTCGGCTCGATTCTTTCTAACATGTTGCTTGTACTTGGCTGCG 532
Query 973 CCTTCTTTTGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTGACAAAGGAATTG 1032
|||| |||||||||||||| || |||| ||| ||||| ||||||||||||||||||| ||
Sbjct 533 CCTTTTTTTGTGGTGGGCTTGTATTTTCCCAGAAAGAGCAAGTCTTTGACAAAGGAAATG 592
Query 1033 CTACTGTGAATTCAGGATTGCTTTTGATGGCTGTCATGGGGATACTCTTCCCGGCTGTTC 1092
| ||||||||| ||||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 593 CCGTTGTGAATTCGGGATTGCTTTTGATGGCTGTCATGGGGCTACTCTTCCCTGCAGTTC 652
Query 1093 TTCACTACACCCATAGCGAGGTTCATGCTGGATCATCAGAGCTAGCCCTGTCAAGGTTCA 1152
|||| ||||| || || |||||||||||||| ||||||||||| || || ||||||||||
Sbjct 653 TTCATTACACGCACAGTGAGGTTCATGCTGGCTCATCAGAGCTTGCTCTCTCAAGGTTCA 712
Query 1153 GCAGTTGCATAATGCTTATAGCTTATGCTGCTTACCTCTTCTTCCAGTTAAAGAGCCAAT 1212
|||||||||||||||| | || ||||||||||||||||| |||||||||||||||||
Sbjct 713 GCAGTTGCATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGC 772
Query 1213 CTAATTCTTATAGCCCTCTCGA-TGAGGAATCAAATCAGAACGAAGAAACTTCTGCCGAA 1271
| | |||||||| |||||| | |||||| |||| ||||| |||||| |||| | |||
Sbjct 773 CGAGTTCTTATACCCCTCT-TACCGAGGAAACAAACCAGAATGAAGAAGCTTCAGACGAT 831
Query 1272 GATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATTTGGCTTTCAATATTGACTGCT 1331
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 832 GATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATCTGGCTTTCAATCTTGACGGCT 891
Query 1332 TGGGTCTCTCTTCTTTCTGGCTATCTTGTTGATGCCATAGAGGGTGCCTCAGTCTCATGG 1391
||||||||||||||||| ||||||||||| |||||||| |||||||| || |||||||||
Sbjct 892 TGGGTCTCTCTTCTTTCCGGCTATCTTGTCGATGCCATTGAGGGTGCTTCGGTCTCATGG 951
Query 1392 AATATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGAACGCAGCTGAA 1451
|| |||||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 952 AAGATACCAATCTCTTTTATCAGTGTAATCTTGCTTCCTATAGTTGGGAATGCGGCTGAG 1011
Query 1452 CATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTGGGAGTGGCT 1511
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CATGCAGGTGCCATTATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTGGGAGTGGCT 1071
Query 1512 ATTGGGTCCTCGATCCAGATTTCCATGTTTGCGGTCCCATTCTGCGTGGTGATTGGATGG 1571
||||| ||||| || |||||||| ||||||||||| || ||||| |||||||| ||||||
Sbjct 1072 ATTGGATCCTCAATTCAGATTTCTATGTTTGCGGTTCCTTTCTGTGTGGTGATCGGATGG 1131
Query 1572 ATGATGGGT-CAACAGATGGACCTTAACTTCCAGCTTTTTGAGACGGCGATGC--TGTTC 1628
||||||||| || || |||||||| || |||||||| |||||||| || ||| ||||
Sbjct 1132 ATGATGGGTGCA-CAAATGGACCTAAATTTCCAGCTATTTGAGACAGC--TGCACTGTTT 1188
Query 1629 ATCACTGTTATAGTAGTAGCATTT-TTTCTCCAGGAAGGGTCATCGAATTACTTCAAAGG 1687
|| |||||||| || ||||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct 1189 ATAACTGTTATTGTTGTAGC-TTTCTTTCTCCAGGAAGGGACATCGAATTACTTCAAAGG 1247
Query 1688 ATTGATGCTGATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTACACGAAGATCC 1747
||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1248 ATTGATGCTCATTCTTTGTTACTTGATAGTCGCTGCTAGTTTCTTTGTACACGAAGATCC 1307
Query 1748 TCACCAAGATGGTATATAA 1766
||| ||||||| |||||||
Sbjct 1308 TCATCAAGATGATATATAA 1326
> Ahg474631 jgi|Araly1|474631|fgenesh2_kg.1__4585__AT1G55720.1
Length=1167
Score = 1044 bits (565), Expect = 0.0
Identities = 966/1156 (84%), Gaps = 41/1156 (4%)
Strand=Plus/Plus
Query 610 CTAAAGCACCAAAGAACAGCGT-ACTTAATAGCATAAAGATCGTGATTTTTTGTAATAAA 668
||||||| || | |||||| || | | | ||| | |||||||||||||| | ||||||
Sbjct 32 CTAAAGCGCCTAGGAACAGTGTGA-TCCAGAGCTTCAAGATCGTGATTTTATCAAATAAA 90
Query 669 CTCAATCTACTACTACCTTTCGGTCCTCTAGCCATATTGGTCCACTACATGATAGATAGT 728
|||||||| | | ||||||||||||||||| ||| | ||||| ||| ||| ||||| |
Sbjct 91 CTCAATCTTTTGTTGCCTTTCGGTCCTCTAGCTATACTAGTCCATTACTTGACAGATACT 150
Query 729 AAGGGGTGGGTGTTCTTGCTGACG-TTAGTAGGCATTACACCATTGGCTGAACGTCTAGG 787
||||| ||| | ||||| || | | ||||||||||| |||||||| ||||||||||| ||
Sbjct 151 AAGGGATGGTTCTTCTTACT-AAGCTTAGTAGGCATCACACCATTAGCTGAACGTCTCGG 209
Query 788 ATATGCCACAGAGCAACTGGCTTGTTACACGGGTCCAACTGTTGGAGGCCTCTTAAATGC 847
|||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||| ||
Sbjct 210 ATATGCCACAGAGCAATTGGCTTGTTACACAGGTTCAACTGTTGGAGGCCTCCTAAACGC 269
Query 848 TACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCT-TTGAAAAATGGAATGA 906
|||||| || || |||| ||||||||||||||| ||| ||||| || ||||| || ||||
Sbjct 270 TACATTTGGAAACGTGATAGAGCTGATCATATCGATTATCGCTCTT-AAAAACGGGATGA 328
Query 907 TACGTGTTGTTCAGCTGACGTTACTAGGCTCAATTCTGTCTAACATGTTACTTGTACTTG 966
|||| ||||| ||| ||||| | || ||||| ||||||||||||||||| ||||||||||
Sbjct 329 TACGCGTTGTACAGTTGACGCTGCTTGGCTCGATTCTGTCTAACATGTTGCTTGTACTTG 388
Query 967 GCTGCGCCTTCTTT-TGTGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTCTTTGACAAA 1025
| |||||||| ||| ||||| || || || |||| || ||||| |||||||||||||||
Sbjct 389 GGTGCGCCTT-TTTCTGTGGCGGCCTTGTGTTTTCCCGGAAAGATCAAGTCTTTGACAAA 447
Query 1026 GGAATTGCTA-CTGTGAATTC-AGGATTGCTTTTGA-TGGCTGTCATGGGGATACTCTTC 1082
|||| ||| | ||||| ||| ||| ||||||| | |||| ||||||||| | || |||
Sbjct 448 GGAAATGC-AGTTGTGAGTTCGGGGA-TGCTTTT-ATTGGCAGTCATGGGGCTGCTTTTC 504
Query 1083 CCGGCTGTTCTTCACTACACCCATAGCGAGGTTCATGCTGGATCATCAGAGCTAGCCCTG 1142
|| | |||||||| ||||| || |||||||||||||| || ||||||||||| || ||
Sbjct 505 CCCACGGTTCTTCATTACACGCACAGCGAGGTTCATGCCGGGTCATCAGAGCTTGCTCTC 564
Query 1143 TCAAGGTTCAGCAGTTGCATAATGCTTATAGCTTATGCTGCTTACCTCTTCTTCCAGTTA 1202
||||| || | |||||| |||||||| | || ||||| ||||| ||||| |||||||||
Sbjct 565 TCAAGATTTATCAGTTGTATAATGCTCCTTGCCTATGCAGCTTATCTCTTTTTCCAGTTA 624
Query 1203 AAGAGCCAATCTAA-TTCTTATAGCCCTCTCGATGAGGAATCAAATCAGAACGAAGAAAC 1261
||||||| | | || || ||||| | | || ||| | || |||| | |
Sbjct 625 AAGAGCC-AGCCAAGTTTTTATA-----C-C---GA-GAA-C-AA--AGAA--ATG---- 663
Query 1262 TTCTGCCGAAGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATTTGGCTTTCAAT 1321
|| | || ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 664 -TCAGAAGATGATGAAGATCCCGAGATCTCCAAGTGGGAAGCTATCATCTGGCTTTCAAT 722
Query 1322 ATTGACTGCTTGGGTCTCTCTTCTTTCTGGCTATCTTGTTGATGCCATAGAGGGTGCCTC 1381
|| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 723 TTTTACGGCTTGGGTCTCTCTTCTTTCCGGCTATCTTGTTGATGCCATAGAGGGTGCTTC 782
Query 1382 AGTCTCATGGAATATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGAA 1441
|||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 783 AGTCTCATGGAAGATACCAATCTCTTTTATCAGTGTCATCTTGCTTCCAATAGTTGGGAA 842
Query 1442 CGCAGCTGAACATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTT 1501
|| || || |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 843 TGCGGCCGAGCATGCAGGTGCTATTATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTT 902
Query 1502 GGGAGTGGCTATTGGGTCCTCGATCCAGATTTCCATGTTTGCGGTCCCATTCTGCGTGGT 1561
||||||||||||||| ||||| || |||||||| ||||| ||||| || ||||| |||||
Sbjct 903 GGGAGTGGCTATTGGATCCTCAATTCAGATTTCTATGTTCGCGGTTCCTTTCTGTGTGGT 962
Query 1562 GATTGGATGGATGATGGGTCAACAGATGGACCTTAACTTCCAGCTTTTTGAGACGGCGA- 1620
||| ||||||||||||||| ||| |||||||| || |||||||| |||||||| || |
Sbjct 963 GATCGGATGGATGATGGGTGTACAAATGGACCTAAATTTCCAGCTATTTGAGACAGCTAC 1022
Query 1621 TGCTGTTCATCACTGTTATAGTAGTAGCATTT-TTTCTCCAGGAAGGGTCATCGAATTAC 1679
| |||| || |||||||| || ||||| ||| ||||||||||||||| |||| ||||||
Sbjct 1023 TA-TGTTTATAACTGTTATTGTTGTAGC-TTTCTTTCTCCAGGAAGGGACATCAAATTAC 1080
Query 1680 TTCAAAGGATTGATGCTGATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTACAC 1739
||||||||| |||||||||||||||| |||||| |||| |||||||| ||||||||||||
Sbjct 1081 TTCAAAGGACTGATGCTGATTCTTTGCTATTTGGTAGTCGCTGCCAGCTTCTTTGTACAC 1140
Query 1740 GAAGATCCTCACCAAG 1755
||||||||||| ||||
Sbjct 1141 GAAGATCCTCATCAAG 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79760973030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5