BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13340.1
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929072 jgi|Araly1|929072|scaffold_301529.1 2290 0.0
Ahg924080 jgi|Araly1|924080|scaffold_105361.1 1354 0.0
> Ahg929072 jgi|Araly1|929072|scaffold_301529.1
Length=1384
Score = 2290 bits (1240), Expect = 0.0
Identities = 1336/1384 (97%), Gaps = 0/1384 (0%)
Strand=Plus/Plus
Query 222 TTTATTTATCTACCAAAAGAATGTCTAATTATCGAGGAGATGATGCTGAGTACATGGAAG 281
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 TTTATTTATCTACCAAAAGAATGTCCAATTATCAAGGAGATGATGCTGAGTACATGGAAG 60
Query 282 ACGTAGATGATGAGATGGAAGATGTTGAAGATGATATGGATGAGGAGTTTCGTGGTGATG 341
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 61 ACGTAGATGATGAGATGGAAGATGTTGAAGATGATATGGATGACGAGTTTCGTGGCGATG 120
Query 342 ATCTTGGTGCTTCAGATTCTGACGTTGAAGAATTTGACTATTCGAACAATAAAGTAGCTG 401
||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 121 ATCTTGGTGCTTCTGATTCTGACGTTGAGGAATTTGACTACTCGAATAATAAAGTAGCTG 180
Query 402 ATACCACGGCTGAGCAAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGAC 461
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATACCTCGGCTGAGCAAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGAC 240
Query 462 TTAATATTTCTAGAGAGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAA 521
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAGTATTTCTAGAGAGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAA 300
Query 522 ATGTCCCTAATTCTGGAGAATCATCAGAAAAGGTTTGCAAGGTCACACAGAAAGGAGGAC 581
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 301 ATGTCCCTAATTCTGGGGAATCCTCAGAAAAGGTTTGCAAGGTCACACAGAAAGGGGGAC 360
Query 582 TATTTTATGACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGC 641
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATTTTATGATTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGC 420
Query 642 TGAGAAATTTGGTATGGGCAACTTCTAAGCACGACGTGTATCTTATGTCAAATTTTCTGG 701
|||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 421 TGAGGAATTTGGTGTGGGCAACTTCTAAGCATGACGTGTATCTTATGTCAAACTTCCTGG 480
Query 702 TTACACATTATTCTTCTCTAACGTCTGGAAAGCATGAAGTTCTCAATGTCCGTGGTCATG 761
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 481 TTACACATTATTCTTCTCTAACTTCCGGAAAGCATGAAGTTCTCAATGTTCGTGGTCATG 540
Query 762 TTGCGCCATCTGAGAAACATCCTGGAAGTTTACTTGAAGGATTTACGCAGACTCAAGTAA 821
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TTGCACCATCCGAGAAACATCCTGGAAGTTTACTTGAAGGATTTACGCAAACTCAAGTAA 600
Query 822 GTACACTTGCAGTAAAAGATGACTTTCTGGTTGCTGGCGGGTTTCAAGGAGAACTTATTT 881
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 601 GTACACTTGCAGTAAAAGACGACTTTCTAGTTGCTGGCGGGTTTCAAGGAGAACTTATTT 660
Query 882 GCAAGCATCTTGATAGACCGGGTGTCAGCTTTTGCTCTCGTATGACTTATGATGATAATG 941
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 661 GCAAGCATCTTGATAGACCAGGTGTCAGCTTTTGCTCTCGTACGACTTATGATGATAATG 720
Query 942 CTATAACCAATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCGT 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 CTATAACCAATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCCT 780
Query 1002 CAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCATT 1061
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCATT 840
Query 1062 TCCGTTTTCCTTGGCCAGTGAATCACGCATCTTTGAGTCCTGATGGTAAATTACTGGCTA 1121
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 TCCGTTTTCCTTGGCCAGTGAATCACGCTTCTTTGAGTCCTGATGGTAAATTACTGGCTA 900
Query 1122 TTGTTGGAGACAACCCGGAGGGCCTTATTGTAGACCCCAACACAGGAAAGACGTTGGAAA 1181
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 901 TTGTTGGAGACAACCCGGAGGGCCTTATAGTAGACCCCAACACAGGAAAGACGTTGGAAA 960
Query 1182 CACTATCAGGACACTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTT 1241
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTCTATCAGGACACTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTT 1020
Query 1242 TCTCTACAGGAAACCAAGATAAGACTTGTCGTGTATGGGACATCCGTAACCTATCTCAGT 1301
|||| ||||||||||| || |||||||| ||||||||||||||||| ||||||||| |||
Sbjct 1021 TCTCAACAGGAAACCAGGACAAGACTTGCCGTGTATGGGACATCCGAAACCTATCTAAGT 1080
Query 1302 CTGTTACTGTCTTGAAGGGTAACCTGGGAGCAATCCGGTCAATCCGCTACACATCAGATG 1361
| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 CCGTTGCTGTCTTGAAGGGTAACCTAGGAGCAATCCGGTCAATCCGCTACACATCAGATG 1140
Query 1362 GAAAATACATGGCCATGGCTGAACCGGCTGACTTTGTCCATGTCTATGATGTCTCAAACG 1421
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1141 GAAAATACATGGCCATGGCTGAACCAGCTGACTTTGTCCATGTCTATGATGTCTCAAACG 1200
Query 1422 GGTATGAAACAGAGCAGGAAATCGACTTCTTTGGGGAAATCTCTGGAATATCTTTCAGCC 1481
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1201 GGTATGAAACAGAGCAGGAAATCGACTTCTTTGGGGAGATCTCAGGAATATCTTTCAGCC 1260
Query 1482 CTGACACAGAGGCGCTATTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGT 1541
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTGACACAGAGGCGCTGTTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGT 1320
Query 1542 TTGGTCGGCGCAGGAACTATTCCTACCTTGACTCGTATCTTTAAGCTAGAAGAGAAGTAT 1601
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1321 TTGGTCGGCGCAGGAACTATTCCTACCTTGACTCGTATCTTTAAGCAAGAAGAGAAGTAT 1380
Query 1602 ACAC 1605
||||
Sbjct 1381 ACAC 1384
> Ahg924080 jgi|Araly1|924080|scaffold_105361.1
Length=1378
Score = 1354 bits (733), Expect = 0.0
Identities = 1164/1373 (85%), Gaps = 25/1373 (2%)
Strand=Plus/Plus
Query 222 TTTATTTATCTACCAAAAGAATGTCTAATTATCGAGGAGATGATGCTGAGTACATGGAAG 281
|||||||||| | | || ||||||||||| | ||| || |||||||||||||||||||
Sbjct 2 TTTATTTATC-AACTGAACTATGTCTAATTACCAAGGGGACGATGCTGAGTACATGGAAG 60
Query 282 ACGTAGATGATGAGATGGAAGATGTTGAAGATGATATGGATGAGGAGTTTCGTGGTGATG 341
| || |||||||| |||||||| | |||||| |||||||||| |||||||| ||||
Sbjct 61 ATGTGGATGATGAAATGGAAGA----G--GATGATTTGGATGAGGATTTTCGTGGGGATG 114
Query 342 ATCTTGG-TGCTTCAGATTCTGACGTTGAAGAATTTGACTATTCGAACAATAAAGTAGCT 400
|| ||| ||| || |||||||| || || || |||||||| || || |||||| |||||
Sbjct 115 AT-ATGGCTGCCTCGGATTCTGATGTCGATGAGTTTGACTACTCAAATAATAAAATAGCT 173
Query 401 GATACCACGGCTGAGCAAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGA 460
||||| | ||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 174 GATACTTCAGCTGACCAAGCTCGCAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGG 233
Query 461 CTTAATATTTCTAGAGAGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAA 520
|||| |||| | |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 234 CTTAGTATTACGAGAGAGAAATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAA 293
Query 521 AATGTCCCTAATTCTGGAGAATCATCA-GAAAAGGTTTGCAAGGTCACACAGAAAGGAGG 579
||||||||||||||||| ||||| ||| | ||| | ||||| || |||||||||||| ||
Sbjct 294 AATGTCCCTAATTCTGGTGAATCCTCAGGGAAA-GATTGCATGGCCACACAGAAAGG-GG 351
Query 580 -ACTATTTTATGACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCC 638
|| ||||| || |||||||||||| || ||||||| || || | ||| || |||||||
Sbjct 352 CCCTTTTTTACGATTTCTGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCC 411
Query 639 AGCTGAGAAATTTGGTATGGGCAACTTCTAAGCACGACGTGTATCTTATGTCA-AATTTT 697
|| |||| |||||||| |||||||||||||||||||| || || ||||||||| ||| ||
Sbjct 412 AGTTGAGGAATTTGGTTTGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAATATT 471
Query 698 CTGGTTA-CACATTATTCTTCTCTAACGTCTGGAAAGCATGAAGTTCTCAATGTCCGTGG 756
|||| | | || |||||| || | || |||||||||||||||||||||||||| | ||
Sbjct 472 -TGGTGAGC-CACTATTCTACTTTGACATCTGGAAAGCATGAAGTTCTCAATGTTCAAGG 529
Query 757 TCATGTTGCGCCATCTGAGAAACATCCTGGAAGTTTACTTGAAGG-ATTTACGCAGACTC 815
||||||| | ||| |||||||||||||||||||||| ||| ||| |||||| ||||||
Sbjct 530 TCATGTTTCCCCAGCTGAGAAACATCCTGGAAGTTTG-TTGGAGGGATTTACAAAGACTC 588
Query 816 AAGTAAGTACACTTGCAGTAAAAGATGACTTTCTGGTTGCTGGCGGGTTTCAAGGAGAAC 875
|||| |||||||| ||||| | |||| | ||| | ||||| || || |||||||||||||
Sbjct 589 AAGTGAGTACACTCGCAGTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAAC 648
Query 876 TTATTTGCAAGCATCTTGATAGACCGGGTGTCAGCTTTTGCTCTCGTATGACTTATGATG 935
|||| |||||||||||||||||||| ||||| |||| ||| || |||| ||||||||||
Sbjct 649 TTATATGCAAGCATCTTGATAGACCTGGTGTGAGCTATTGTTCACGTACAACTTATGATG 708
Query 936 ATAATGCTATAACCAATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTA 995
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 709 ATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTA 768
Query 996 CTGCGTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTA 1055
|||| || |||||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 769 CTGCCTCGAATAATGATTGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTA 828
Query 1056 AGCATTTCCGTTTTCCTTGGCCAGTGAATCACGCATCTTTGAGTCCTGATGGTAAATTAC 1115
| ||||| || ||||| ||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 829 ACCATTTTCGCTTTCCATGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTAT 888
Query 1116 TGGCTATTGTTGGAGACAACCCGGAGGGCCTTATTGTAGACCCCAACACAGGAAAGACGT 1175
|| | ||||| ||||| ||||| || |||||| | ||||| |||||||| |||||||||
Sbjct 889 TGACGATTGTGGGAGATAACCCAGAAGGCCTTCTGGTAGAACCCAACACTGGAAAGACGC 948
Query 1176 TGGAAACACTATCAGGACACTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAG 1235
||| ||| |||||||||| ||||||||||||||||| || || |||||||| ||||| |
Sbjct 949 TGGCAACGTTATCAGGACATTTGGACTTTTCCTTTGCATCGGCATGGCATCCAGATGG-G 1007
Query 1236 T-CACTTTCTCTACAGGAAACCAAGATAAGACTTGTCGTGTATGGGACATCCGTAACCTA 1294
| ||||||||| || || ||||| || || || || || || |||||||| ||||||||
Sbjct 1008 TTCACTTTCTCCACTGGTAACCAGGACAAAACCTGCCGGGTTTGGGACATTCGTAACCTT 1067
Query 1295 TCTCAGTCTGTTACTGTCTTGAAGGGTAACCTGGGAGCAATCCGGTCAATCCGCTACACA 1354
||| | |||||| ||||||||| ||||||||| ||||||||||| || ||||||||||||
Sbjct 1068 TCTAAATCTGTTGCTGTCTTGAGGGGTAACCTTGGAGCAATCCGATCCATCCGCTACACA 1127
Query 1355 TCAGATGGAAAATACATGGCCATGGCTGAACCGGCTGACTTTGTCCATGTCTATGATGTC 1414
|| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1128 TCTGATGGGAAATACATGGCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTC 1187
Query 1415 TCAAACGGGTATGAAACAGAGCAGGAAATCGACTTCTTTGGGGAAATCTCTGGAATATC- 1473
||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||
Sbjct 1188 TCAAACGGGTATGAAACGGAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCA 1247
Query 1474 TTTCAGCCCTGACACAGAGGCGCTATTTATTGGGGTATGGGACCGCACTTATGGTAGCCT 1533
||| ||||| |||||||| || || || || || || |||||||||||||| || || ||
Sbjct 1248 TTT-AGCCCCGACACAGAAGCACTCTTCATCGGCGTTTGGGACCGCACTTACGGAAGTCT 1306
Query 1534 CCTTGAGTTTGGTCGGCGC-AGGAACTATTCCTACCTTGACTCGTATCTTTAA 1585
|||||| ||| |||||| | ||||| ||||||||||| || | ||| |||
Sbjct 1307 AATTGAGTATGGCCGGCGCCAC-AACTACTCCTACCTTGATTCATTTCTATAA 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77285107105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5