BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13350.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478718 jgi|Araly1|478718|fgenesh2_kg.3__1419__AT3G13350.1 1912 0.0
> Ahg478718 jgi|Araly1|478718|fgenesh2_kg.3__1419__AT3G13350.1
Length=1268
Score = 1912 bits (1035), Expect = 0.0
Identities = 1207/1286 (94%), Gaps = 27/1286 (2%)
Strand=Plus/Plus
Query 110 GAAAAATAAAAATCTGAAATACGGTGGTCTCAATTGCTCTTACCTTTACCAAGACGGCCA 169
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3 GAAAAAT-AAAATCTTAAATACGGTCGTCTCAATTGCTCTTACCTTTACCAAGACGGCC- 60
Query 170 TAAGaaaaaaaaGATGTCGACCGATATTTCACCACCCTACTCTCAAACTCACGTGGAGCC 229
| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 --A-AAAGAAAAGATGTCGACCGATATTT---CACCCTACTCTCAAACTCACGTGGAGCC 114
Query 230 CGTTAATGGTTATCCTTCTGACAACAAGAGATGCGACGATTCCTCTGTTCCTGCCAAATA 289
|||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 115 CGTTAATGGTTATCCTTCAGACAACAAGCGATGCGACGATTCCTCTGCTCCTGCCAAATA 174
Query 290 TGATGATCTTGTCCGTAACTCTGCTCTCTTCTGGGAAAAGCTCCGAGCT-TTCCTCGGAT 348
|||||||||||||||||||||| ||||||||||||| |||||||||||| || ||||||
Sbjct 175 TGATGATCTTGTCCGTAACTCTTCTCTCTTCTGGGATAAGCTCCGAGCTGTT-CTCGGAC 233
Query 349 TAACCAG-CAAGACTTTGAAGGTTCCTACTGTGGGAGGAAACACTCTTGATCTGCATCGG 407
||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 234 TAACCAGCCAA-ACTTTGAAGGTTCCTACTGTGGGAGGGAACACTCTTGATCTGCATCGG 292
Query 408 CTTTTCATCGAGGTTACGTCTCGAGGTGGTATCGAAAGGGTGGTGAAGGATCGGAAATGG 467
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 293 CTTTTCATTGAGGTTACGTCTCGAGGTGGTATCGAAAGGGTGGTTAAGGATCGGAAATGG 352
Query 468 AAAGAAGTGATTGGTGCATTCAGTTTTCCGACAACGATAACAAGTGCATCGTTTGTCTTG 527
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AAAGATGTGATTGGTGCATTCAGTTTTCCGACAACGATAACAAGTGCATCGTTTGTCTTG 412
Query 528 AGGAAGTATTATCTCAAGTTTCTTTTTCAGCTGGAACATGTGTATTACCTTGAAAAACCG 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGGAAGTATTATCTCAAGTTTCTTTTTCAGCTGGAACATGTGTATTACCTTGAAAAACCA 472
Query 588 GTGTCTTC-ACTCCAATCAACAGATGAAGCATTGAAGAGCCTTGCCAATGAATCTCCAAA 646
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 473 GTGTCTTCGA-TCCAATCAACAGATGAAGCAATGAAGAGCCTTGCCAATGAATCTCCAAA 531
Query 647 CCCTGAGGAAGGTATTGATGAACCACAAGTTGGGTATGAGGTTCAAGGATTCATTGATGG 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 532 TCCTGAGGAAGGTATTGATGAACCACAAGTTGGGTATGAGGTTCAAGGATTCATTGACGG 591
Query 707 GAAGTTTGATAGCGGCTATCTGGTGACGATGAAATTGGGTTCTCAAGAGCTGAAAGGTGT 766
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GAAGTTTGATAACGGCTATCTGGTGACGATGAAATTGGGTTCTCAAGAGCTGAAAGGTGT 651
Query 767 CCTTTACCACATTCCTCAAACGCCAAGTCAGTCTCAACAAACCATGGAAACACCTTCAGC 826
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 652 GATTTACCACATTCCTCAAACGCCAAGTCAGTCCCAACAAACCATGGAAACAGCTTCAGC 711
Query 827 CATTGTACAATCATCACAACGCCGGCATAGGAAGAAATCAAAGTTGGCTGTAGTCGATAC 886
|| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 712 CACTGTACCATCATCACAACGCCGGCATAGGAAGAAATCAAAGTTGGCTGTCGTCGATAC 771
Query 887 TCAAAAACCCAAATGCCACAGGAGTGGCTACAACTTCTTTTTTGCTGAGCAGTACGCGAG 946
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 772 TCAGAAGCCCAAATGCCACAGGAGTGGCTACAACTTCTTTTTTGCTGAGCAGTACGCTAG 831
Query 947 GCTTAAACCTGAGTACCATGGACAAGAACGATCCATCACTAAGAAAATAGGACACATGTG 1006
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 832 GCTTAAACCTGAGTACCATGGACAAGAACGAAGCATCACCAAGAAAATAGGACACATGTG 891
Query 1007 GAGCAATCTCACTGAATCTGAGAAACAGGTTTATCAAGACAAAGGAGTTAAGGATGTGGA 1066
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GAGCAACCTCACTGAATCTGAGAAACAGGTTTATCAAGACAAAGGAGTTAAGGATGTGGA 951
Query 1067 GAGATACAGAATTGAGATGTTGGAATATAAGTCTTCACATGAATCAGGAGCTACTGCTTC 1126
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 952 GAGATACAGAATTGAGATGTTGGAATATAAGTCTTCACATGAGTCAGGAGCTGCTGCTTC 1011
Query 1127 TACAGTGGCTCAGTAGCTTTTCTCCCTTTTGTTGTCTTACGTGTCTGTTGTAACAttttt 1186
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct 1012 TACAGTGGCTCAGTAGCTTTTCTCCCTTTTGTTGTCTTATGTGTTTGTTGTAACATTGT- 1070
Query 1187 ccttttctctatagaacttgttttctttttctttctaa-atgtaatgttttctATCAGTT 1245
| ||||||||||| |||||||||| ||||||||||| | ||| || ||||||| ||||
Sbjct 1071 CTTTTTCTCTATAAAACTTGTTTTTTTTTTCTTTCTTTTA-GTAGTGATTTCTATGAGTT 1129
Query 1246 GGAGGATTTGTCA-GCTTTATTATGGCTTTAGAGCTAGTGAGGAGGTTACTAACTGTGAA 1304
| || ||||| || | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 GCAGAATTTGCCATG-TTTATTATGGCTTTAGAGCTAGTGAGGAGGTTACTAACTGCGAA 1188
Query 1305 CTAGTGTCTCTCTTGTTGTTTC-TTTT-AGTAAGTGCCATTTTTGTAGTGAATTACAGGC 1362
|||||||||||||||||||||| |||| || |||||||||||| ||||| | | |||
Sbjct 1189 CTAGTGTCTCTCTTGTTGTTTCCTTTTTAGCAAGTGCCATTTT-GTAGT-A----CGGGC 1242
Query 1363 ATATCCATATATCCAGATCTTTCTTC 1388
||| ||||||||||||||||||||||
Sbjct 1243 ATAGCCATATATCCAGATCTTTCTTC 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5