BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13360.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904239 jgi|Araly1|904239|Al_scaffold_0003_1367 2163 0.0
> Ahg904239 jgi|Araly1|904239|Al_scaffold_0003_1367
Length=1383
Score = 2163 bits (1171), Expect = 0.0
Identities = 1315/1385 (95%), Gaps = 7/1385 (1%)
Strand=Plus/Plus
Query 154 ATGAATGAGTCAGTCCCTGATTCTGTGGAAGACAACGGTAATTCAGTCCCTGCAAATGGA 213
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAATGAGTCAGTCCCTGAATCTGTGGAAGACAATGGTAATTCAGTCCCTGCAAATGGA 60
Query 214 TTATTAGTATTGCCTGATAATGATCATGAGGAAGGAGGTGTTGGATCACCTCAACGATCG 273
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATTAGTATTGCCTGATATTGATCATGAGGAAGGAGGTGTTGGATCACCTCAACGATCG 120
Query 274 AACAGCGTTGAATCTCCTGGTGGATCAGTACATTCTACGAGGAAAGGTTTTGGTTTGAAG 333
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACAGCGTTGGATCTCCGGGTGGATCAGTACATTCTACGAGGAAAGGTTTTGGTTTGAAG 180
Query 334 AAATGGAGACGGATCAAAAGAGATGGTCCTGTGAGAGATGAGGCTGCTCCTGTTGATGAT 393
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AAATGGAGACGGATCAAAAGAGATGGTCCTGTGAGAGACGAGGCTGCTCCTGTTGATGAT 240
Query 394 GGTAGTAAGTTACTGAAACGTGGATTGGCTGGTTTGGTGAATCCTCCTTCTAAACATGTA 453
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTAGTAAGTTGCTGAAGCGTGGATTGGCTGGTTTGGTGAATCCTCCTTCTAAACATGTA 300
Query 454 GAATTTTCTTCAGTTGAAGCAAGGCAGAGTAGTGAAGGCTCTGTTGGGTCAGTGAATATG 513
|| || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 301 GACTTGTCTTCAGTCGAAGCAAGACAGAGTAGTGAAGGCTCTGTTGGGTCTGTGAATATG 360
Query 514 GTGCATCATCCAGGGGTAGCCAACGGGTTTAGTCCCGATATAGGTTGTATGTTTGCTGTT 573
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 GTGCATCATCCAGGAGTAGCCAACGGGTTTAATCCCGATATAGGTTGTATGTTTGCTGTT 420
Query 574 GGGCAAGCGTTTGAGAAAAGTGAAGAGCATAGTGGTAATACCATAGGTGGAAAGAATGTA 633
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 GGCCAAGCGTTTGAGAAAAGTGAAGAGCATAGTGGTAATACCATAGGTGCAAAGAATGTA 480
Query 634 GTAGGAGGGAAGGTTGTTTCAGGTAGCCAAGAGAAACTCTGGAGTGATACCATCAAGAGG 693
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 GTAGGAGGGAAGATTGTTTCAGGTAGCCAAGAGAAACTCTGGAGTGATACCATCAAGAAG 540
Query 694 GCTAGCGAAGAGCGGGGGGATA-TCGAGAAGGAGAAGCCTTGTTCCAGCTTGGATTCCGA 752
|||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 541 GCTAGCGAGGAGCGGGGGAATAGT-GAGAAGGAGAAGCCTTGTTCCAGCTTGGATTCCGA 599
Query 753 CTTGAGAAGTAGTGATTTTGTGTTTTCGACTGGCTCGGTTTCTGTTGGTAACCATGGAGA 812
|||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 600 CTTGAGAAGTAGCGATTTTGTGTTTTCGAGTGGCTCGGTTTCTGTTGCTAACCATGGAGA 659
Query 813 GAAAGATGAGAGATTGACGATGAATTATATTGGGGGATTTAGCAATGAAGGTCAAGTTAA 872
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 GAAAGATGAGAGATTGACGATGAATTATATTGGGGGATTTAGCAATGAAGGTCAAGTTCA 719
Query 873 GGAGGAAGTTCAAACATATAGCAGAAGCGAAAACGGGAATAAAGAAGACGATGGAGA-GA 931
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 720 GGAGGAAGTTCAAACATATAGCAGAAGCAAAAACGGGTATAAAGAAGACGATGGAGATGA 779
Query 932 G--TAAGAAAAACAACAATCATTGGGCAGATAAAGA-CGCACTTGCAGATTCTATCAGAA 988
| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 780 GAGTAAGAAAAACAATAATCATTGGGCAGATAAAGATC-CACTTGCAGATTCTATCAGAA 838
Query 989 GCTTTGCAGTTCTGCAGGAAGTTCTTTGGAAAGAGGTTCAAAGTTTCCAGGAGCTAGGTA 1048
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 839 GCTTTGCAGCTCTGCAGGAAGCTCTTTGGAAAGAGGTTCAAAGTTTCCAGGAGCTGGGTA 898
Query 1049 AGGAATCTGTACTACTACATTCGAACACCGATGAATTGAGTTCAGACCAGCCAAGTCATC 1108
| |||||| ||||||||||||| |||||||||||| ||||| ||||||| |||||||||
Sbjct 899 ATGAATCTATACTACTACATTCAAACACCGATGAAATGAGTGCAGACCAACCAAGTCATG 958
Query 1109 AAAATTGTAAAGAAGATAACTCAACATCCTCAGGATCAAAGGCACTGATCTTGAAGGAGA 1168
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAAATTGTAGAGAAGATAACTCAACATCCTCAGGATCAAAGGCACTGATCTTGAAGGAGA 1018
Query 1169 AGGTAAAACTTCTGGAACACAAACTCGAGGAAGCGAGAGCTGCTCTCGAGGCAAAGGAAG 1228
||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1019 AGGTAAAACATCTGGAACACAAACTCGAGGAAGCGAGAACTGCGCTCGAGGCAAAGGAAG 1078
Query 1229 CTAGGATCCAAGAACTCGAAAACTCAAAGATTGAATCTGAACTTGAATGCATCTTCCAGA 1288
| |||||||| ||||||||||||| |||||||||||||||||| ||| |||| |||||||
Sbjct 1079 CCAGGATCCATGAACTCGAAAACTTAAAGATTGAATCTGAACTCGAAGGCATTTTCCAGA 1138
Query 1289 GAAAGATTGAAACTGAAATCGAACATTTGATGCTCACAAGATCTCTGAGTTCACTACAAG 1348
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1139 GAAAGATCGAAACTGAAATCGAGCATTTGATGCTCACAAGAACTCTGAGTTCACTACAAG 1198
Query 1349 TACTCCAAGAAACTAAGAAGTTACATTCTCTGAAAGAAGATCCTGTATCAAACCGTGGAA 1408
|||||||||| ||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1199 CACTCCAAGAACCTAAGAAGTTACATTCTCTGACAGAAGATCTTGAATCAAACCGTGGAG 1258
Query 1409 ACATCTTAGGAAAAACATGTAAGCTCGGTTTCTATATCTTGACACAATTGATCTTGCTCG 1468
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACATCTTTGGAAAAACATGTAAGCTCGGTTTCTATATCTTGACACAATTGATCTTGCTCG 1318
Query 1469 TCTCTATACTTCGGTTTCTCGTCCTACAATTCTCTCCTGCTTCACGATTAGTAATACCAA 1528
| |||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 1319 TTTCTATACTTCGGCTTCTAGTCCTACAATTCTCTCCTGATTCACGATTAGTTATACCAA 1378
Query 1529 CTTGA 1533
|||||
Sbjct 1379 CTTGA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5