BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13390.1
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478720 jgi|Araly1|478720|fgenesh2_kg.3__1421__AT3G13390.1 3421 0.0
Ahg924070 jgi|Araly1|924070|scaffold_105351.1 1511 0.0
Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1 893 0.0
> Ahg478720 jgi|Araly1|478720|fgenesh2_kg.3__1421__AT3G13390.1
Length=2117
Score = 3421 bits (1852), Expect = 0.0
Identities = 2034/2121 (96%), Gaps = 16/2121 (1%)
Strand=Plus/Plus
Query 1 GAAATTCAAACCCCAAAGCATAATTATATATAACAATAAACAATTAGTA--CCA--AAAC 56
||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||
Sbjct 1 GAAATTCAAACCCCAAAGCATAA-T-TATATAACAATAAACAATTAGTACCCCACCAAA- 57
Query 57 ACATAAAAAATCTATAACTGTTATCTCAACC--AAAAATTGTTTATTGTTATGCGAGGGG 114
||| ||| |||||| ||||||||||| | || |||||||||||||||||||||||||||
Sbjct 58 ACACAAATAATCTAAAACTGTTATCTGAGCCAAAAAAATTGTTTATTGTTATGCGAGGGG 117
Query 115 TTAAACTCTTGGCCGCGTGCCTCTACCTGGCCGCTGCCGCAACGGTGGTAGTCCGAGCCG 174
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 118 TTAAACTCTTGGCCGCGTGCCTCTACCTGGCCGCAGCCGCAACGGTGGTGGTCCGAGCAG 177
Query 175 AAGATCCTTACTTCCATCACGTATGGAACGTGACCTACGGAACCGTGTCTCCTCTCGGTG 234
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 178 AAGACCCTTACTTCCATCACGTATGGAACGTGACCTACGGAACCGTGTCTCCGCTCGGCG 237
Query 235 TTCCACAACAAGTCATTCTCATCAACGGACAATTCCCTGGTCCCAACGTCAACTCAACCT 294
||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct 238 TTCCACAACAAGTCATTCTGATCAACGGCCAATTCCCTGGTCCCAACATCAACTCAACCT 297
Query 295 CCAACAACAACGTCATCATTAATGTCTTCAACAACCTCGACGAACCTTTCCTCCTCACAT 354
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCAACAACAACATCATCATCAATGTCTTCAACAACCTCGACGAACCTTTCCTCCTCACAT 357
Query 355 GGAATGGGATCCAACACAGGAAGAACTGTTGGCAAGATGGGACTCCAGGAACTATGTGTC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGAATGGGATCCAACACAGGAAGAACTGTTGGCAAGATGGGACTCCAGGAACTATGTGTC 417
Query 415 CGATCATGCCCGGCACCAACTACACTTACCATTTCCAGCCTAAGGATCAGATCGGAAGCT 474
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CGATAATGCCCGGCACCAACTACACTTACCATTTCCAGCCTAAGGATCAGATCGGAAGCT 477
Query 475 ATTTCTACTACCCCAGCACCGCGATGCACCGTTCCGCTGGTGGATTCGGTGGTCTCCGTG 534
|||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 478 ATTTCTACTACCCCAGCACCGCCTTGCACCGTTCTGCTGGTGGATTCGGTGGACTCCGTG 537
Query 535 TGAACAGCCGTCTCCTCATCCCGGTCCCTTATGCTGACCCAGAAGATGACTACACCGTCT 594
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 TGAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCAGAAGATGACTACACCGTCT 597
Query 595 TGATCGGTGACTGGTACACCAAGAGCCACACCCAGTTGAAGAAATTCCTTGACAGCGGTC 654
|||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 598 TGATCGGTGATTGGTACACTAAGAGCCACACCCAATTGAAGAAATTCCTTGATGGCGGTC 657
Query 655 GTACTCTTGGCCGTCCAGATGGTATTCTCATCAACGGAAAGTCCGGGAAAGGCGATGGAT 714
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 GTACTCTTGGCCGTCCAGATGGTATTCTCATCAACGGAAAGGCCGGGAAAGGCGATGGAT 717
Query 715 CCGATGCACCTCTCTTTACCTTGAAACCTGGAAAGACCTACAGGGTTAGGATCTGTAACG 774
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 718 CCGATGCACCTCTCTTTACCTTGAGACCTGGAAAGACCTACAGGGTTAGGGTCTGTAACG 777
Query 775 TGGGTCTCAAGACATCTCTTAACTTTAGGATTCAGAATCACAAGTTGAAGCTTGTTGAGA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 778 TGGGTCTCAAGACATCTCTTAACTTTAGGATTCAGAATCACAAGTTGAAGCTCGTTGAGA 837
Query 835 TGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCTCTCGACGTTCACGTTGGTCAGT 894
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 TGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCTCTCGACGTTCACGTCGGTCAGT 897
Query 895 GTTACGGAACCATCCTTACCGCTAATCAGGAAGCTAAAGATTACTACATGGTTGCATCCT 954
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTTACGGAACCATCCTTTCCGCTAATCAGGAAGCTAAAGATTACTACATGGTTGCATCCT 957
Query 955 CTAGGTTCTTGAAGTCGGTTATAACCACCACTGGTCTTCTCCGCTATGAGGGAGGCAAAG 1014
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct 958 CTAGGTTCTTGAAGTCGGTTATTACCACTACCGGTCTTCTCCGCTATGAGGGAGGAAAAG 1017
Query 1015 GTCCCGCTTCTTCGCAGCTACCCCCTGGTCCAGTCGGCTGGGCTTGGTCCTTGAACCAGT 1074
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 GCCCCGCTTCTTCGCAGCTACCCCCTGGTCCAGTTGGCTGGGCTTGGTCCTTGAACCAGT 1077
Query 1075 TCCGATCTTTCAGGTGGAACTTGACCGCCAGTGCAGCCAGGCCTAACCCTCAGGGATCTT 1134
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1078 TCCGATCTTTCAGATGGAACTTGACCGCCAGTGCGGCCAGGCCTAACCCTCAGGGTTCTT 1137
Query 1135 ACCACTACGGAAAGATCAACATCACACGCACCATCAAGCTTGTGAACACTCAAGGCAAGG 1194
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACCACTACGGAAAGATCAACATTACACGCACCATCAAGCTTGTGAACACTCAAGGCAAGG 1197
Query 1195 TCGATGGAAAGCTCAGGTACGCTTTGAACGGAGTCTCGCACACTGACCCCGAAACCCCAT 1254
|| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1198 TCAATGGAAAGCTCAGGTACGCGTTGAACGGAGTCTCGCACACTGACCCTGAAACCCCAT 1257
Query 1255 TGAAGCTTGCGGAGTACTTTGGTGTTGCCGACAAGGTTTTCAAGTACGACTCCATCACTG 1314
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1258 TGAAGCTTGCCGAGTACTTTGGTGTTGCCGACAAGGTTTTCAAGTACGACAGCATCACTG 1317
Query 1315 ATAACCCAACCCCAGAACAAATCAAGAGCATCAAGATCGTGCCAAATGTTCTTAACATCA 1374
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1318 ATAACCCAACCCCAGAACAAATCAAGAGCATCAAGATCGAGCCAAATGTTCTTAACATCA 1377
Query 1375 CTCACCGCACCTTCATCGAGGTGGTGTTTGAGAACCACGAGAAGAGTGTTCAGTCGTGGC 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTCACCGCACCTTCATCGAGGTGGTGTTTGAGAACCACGAGAAGAGTGTTCAGTCGTGGC 1437
Query 1435 ACTTGGACGGTTACTCCTTCTTTGCCGTCGCTGTCGAGCCAGGGACTTGGACCCCAGAGA 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1438 ACTTGGACGGTTACTCCTTCTTTGCCGTCGCTGTCGAGCCAGGGACTTGGACTCCAGAGA 1497
Query 1495 AGAGAAAAAACTACAACCTGCTGGACGCAGTGAGCAGACACACAGTCCAAGTCTACCCAA 1554
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGAGAAAGAACTACAACCTTCTGGACGCAGTGAGCAGACACACAGTCCAAGTCTACCCAA 1557
Query 1555 AATGTTGGGCAGCAATCTTGCTCACATTCGACAACTGTGGAATGTGGAACGTTCGATCTG 1614
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1558 AATGTTGGGCAGCAATCTTGCTCACATTCGACAACTGTGGAATGTGGAACATTCGATCTG 1617
Query 1615 AAAACTCCGAGAGACGCTACTTAGGACAGCAGCTTTACGCGAGTGTCTTGTCACCAGAGA 1674
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AAAACTCCGAGAGACGTTACTTAGGACAGCAGCTTTACGCGAGTGTCTTGTCACCAGAGA 1677
Query 1675 AATCACTGAGAGATGAATACAACATGCCTGAGACAAGCCTCCAATGTGGTCTAGTGAAGG 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1678 AATCACTGAGAGATGAATACAACATGCCTGAGACAAGCCTCCAATGTGGTCTAGTCAAGG 1737
Query 1735 GTACACCTAAGCCTAACCCTTACGCTGGAGCCTAAGTTAAATTTTACAAAAAATT-TACT 1793
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 1738 GTACACCTAAGCCTAATCCTTACGCTGGAGCCTAAGTTAAATTTTACAAAAAAAAATATT 1797
Query 1794 TTTAATGCAACAAAATAGTTTGGATTCTTCTGTTGATTCAATCGATTGAGAGGCATTTGC 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TTTAATGCAACAAAATAGTTTGGATTCTTCTGTTGATTCAATCGATTGAGAGGCATTTGC 1857
Query 1854 AAGACGTTTACCTAACGGAtttatttttctggttttttgggtcttttctttttaactgtt 1913
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1858 AAGACGTTTACCCAACGGATTTATTTTTCTGGTTTTTTGGGTCTTTT-TTTTTAATTGTT 1916
Query 1914 ttaaattttataaaattgatttttaaaaGTATATGGTTTATTCGTATATACATGAAATTG 1973
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 TTACATTTTATGAAATTGATTTTTAAAAGTATATGGTTTATTCGTATATACATGAAATTG 1976
Query 1974 AAATGTATGTATGTCTATCCCTTAA-GTAAttttttt---cttgttttaaaaagacgcat 2029
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||
Sbjct 1977 AAATGTATGTATGTCTATCCCTTAAAGTAATTTTTTTTTTCTTCTTTTAAAAAGAAGCAT 2036
Query 2030 taagtttc-tctttttttgttcttcatttttttGTAACGCTTATGTAATGTATCCATAAT 2088
||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 2037 TAATTTTTATCTTTTTTTGTTCTTCACTTTTTTGTAACGCGTATGTAATGTATCCATAAT 2096
Query 2089 CTTCAACGAAATAAGCAGAGA 2109
|||||| ||||||||||||||
Sbjct 2097 CTTCAATGAAATAAGCAGAGA 2117
> Ahg924070 jgi|Araly1|924070|scaffold_105351.1
Length=1709
Score = 1511 bits (818), Expect = 0.0
Identities = 1398/1679 (83%), Gaps = 36/1679 (2%)
Strand=Plus/Plus
Query 109 GAGGGGTTAAACTCTTGGCCGCGTGCCTCTACCTGGCCGCTGCCGCAACG--GTGGTAGT 166
||||||||||||| ||||||| |||||| | ||||| | | || | || || | ||
Sbjct 29 GAGGGGTTAAACTTTTGGCCGTGTGCCTTTGTGTGGCCAC-GGCG-ACCGTCATGATGGT 86
Query 167 CCGAGCCGAAGATCCTTACTTCCATCACGTATGGAACGTGACCTACGGAACCGTGTCTCC 226
|| ||| || || ||||||||||| ||||| ||||| ||||| |||||||||| |||||
Sbjct 87 CCAAGCGGAGGACCCTTACTTCCACCACGTGTGGAATGTGACGTACGGAACCGCATCTCC 146
Query 227 TCTCGGTGTTCCACAACAAGTCATTCTCATCAACGGACAATTCCCTGGTCCCAACGTCAA 286
||| || ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 147 TCTAGGCGTTCCACAACAAGTCATTCTCATTAACGGTCAATTCCCTGGTCCTAACATCAA 206
Query 287 CTCAACCTCCAACAACAACGTCATCATTAATGTCTTCAACAACCTCGACGAACCTTTCCT 346
||| || || ||||||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 207 CTCCACTTCTAACAACAACGTCATCGTTAATGTTTTCAACAACCTCGACGAGCCTTTCCT 266
Query 347 CCTCACATGGAATGGGATCCAACACAGGAAGAACTGTTGGCAAGATGGGACTCCAGGAAC 406
| | || |||||||| ||||| ||||| |||||||| ||||||||||| || | |||||
Sbjct 267 CATTACCTGGAATGGAATCCAGCACAGAAAGAACTGCTGGCAAGATGGAACAGCTGGAAC 326
Query 407 TATGTGTCCGAT-CATGCCCGG-CACCAACTACACTTACCATTTCCAGCCTAAGGATCAG 464
|||||||| || | | || || || |||| ||| |||||||||||||| ||||||||
Sbjct 327 AATGTGTCCCATCCCT-CCGGGTCA-GAACTTCACATACCATTTCCAGCCAAAGGATCAA 384
Query 465 ATCGGAAGCTATTTCTACTACCCCAGCACCGCGATGCACCGTTCCGCTGGTGGATTCGGT 524
||||| ||||| ||||||||||| | ||| || ||||| ||| |||||||||| || |||
Sbjct 385 ATCGGTAGCTACTTCTACTACCCGACCACAGCCATGCATCGTGCCGCTGGTGGCTTTGGT 444
Query 525 GGTCTCCGTGTGAACAGCCGTCTCCTCATCCCGGTCCCTTATGCTGACCCAGAAGATGAC 584
|| || |||||||||||||||||| | |||||||| || || |||||||| |||||||||
Sbjct 445 GGCCTTCGTGTGAACAGCCGTCTCTTGATCCCGGTTCCGTACGCTGACCCTGAAGATGAC 504
Query 585 TACACCGT-CTTGATCGGTGACTGGTACACCAAGAGCCACACCCAGTTGAAGAAATTCCT 643
||||| || ||| ||| |||||||||||||| |||||||| ||| | ||||| || ||
Sbjct 505 TACACTGTCCTT-ATCAACGACTGGTACACCAAAAGCCACACTCAGCTCAAGAAGTTTCT 563
Query 644 TGACAGCGGTCGTACTCTTGGCCGTCCAGATGGTATTCTCATCAACGG-AAAGTCCGGGA 702
||||| ||||| ||| |||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 564 CGACAGTGGTCGCACTATTGGCCGTCCAGATGGCATTCTCATCAACGGTAAA-TCCGGGA 622
Query 703 AAGGC-GATGGATCCGATGCACCTCTCTTT-ACCTTGAAACCTGGAAAGACCTACAGGGT 760
|| | ||||| || || |||||| ||| |||||||| || ||||| |||||||| ||
Sbjct 623 AA-ACTGATGGCTCTGACAAACCTCT-TTTCACCTTGAAGCCAGGAAAAACCTACAGAGT 680
Query 761 TAGGATCTGTAACGTGGGTCTCAAGACATCTCTTAACTTTAGGATTCAGAATCACAAGTT 820
| ||||||||||||||||||||| ||||||||||||| || |||||||| ||||| |
Sbjct 681 CCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTCAGAATTCAGAACCACAAAAT 740
Query 821 GAAGCTTGTTGAGATGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCTCTCGACGT 880
||||||||| ||||||||||| || |||||||| || ||||| |||||||| || || ||
Sbjct 741 GAAGCTTGTCGAGATGGAAGGTTCACACGTTCTACAAAACGACTATGACTCCCTTGATGT 800
Query 881 TCACGTTGGTCAGTGTTACGGAACCATCCTTACCGCTA-ATCAGGAAGC-TAAAGATTAC 938
|| || |||||||||| || ||| | || || | | || ||| | ||||||||||
Sbjct 801 CCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGC-AGACCAAGAA-CTTAAAGATTAC 858
Query 939 TACATGGTTGCATCCTCTAGGTTCTTGAAG--TCGGTTATAACCACCAC-TGGTCTTCTC 995
||||||||||| ||| | |||||||||||| | || | || || || ||| | |||
Sbjct 859 TACATGGTTGCTTCCACAAGGTTCTTGAAGAAAC-CTT-TGACAACGACAGGGT-TACTC 915
Query 996 CGCTATGAGGGAGGCAAAGGTCCCGCTTCTTCGCAGCTACC-CCCTGGTCCAGTCGGCTG 1054
||||| ||||||||||||||||| || ||||| |||||||| || | || || || ||
Sbjct 916 CGCTACGAGGGAGGCAAAGGTCCTGCCTCTTCTCAGCTACCTGCC-GCCCCCGTTGGTTG 974
Query 1055 GGCTTGGTCCTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACCGCCAGTGCAGCCAG 1114
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 975 GGCTTGGTCTTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACAGCCAGCGCAGCTAG 1034
Query 1115 GCCTAACCCTCAGGGATCTTACCACTACGG-AAAGATCAACATCACACGCACCATCAAGC 1173
|||||||| || || || ||||||||||| ||| || |||||||| |||||||||||||
Sbjct 1035 ACCTAACCCACAAGGCTCGTACCACTACGGTAAA-ATTAACATCACTCGCACCATCAAGC 1093
Query 1174 TTGTGAACACTCAAGGCAAGGTCGATGGAAAGCTCAGGTACGCTTTGAACGGAGTCTCGC 1233
| ||||||||||| || ||||||||||| ||||| |||||||| |||| ||| ||||| |
Sbjct 1094 TCGTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTGAGCGGGGTCTCCC 1153
Query 1234 ACACTGACCCCGAAACCCCAT-TGAAGCTTGCGGAGTACTTTGGTGTTGCCGACAAGGTT 1292
|||| ||||| || || || | | ||||| || |||||||| || ||||| || ||||||
Sbjct 1154 ACACCGACCCTGAGACACC-TCTCAAGCTCGCTGAGTACTTCGGCGTTGCTGATAAGGTT 1212
Query 1293 TTCAAGTACGACTCCATCACTGATAACCC-AACCCCAGAACAAATCAAGAGCATCAAGAT 1351
|||||||||||| ||||| | || ||||| || ||| || || ||||||| |||||||||
Sbjct 1213 TTCAAGTACGACACCATCTCGGACAACCCAAATCCC-GATCAGATCAAGAACATCAAGAT 1271
Query 1352 CGTGCCAAATGTTCTTAACATCACTCACCGCACCTTCATCGAGGTGGTGTTTGAGAACCA 1411
|| || |||||||||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct 1272 CGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTGTTCGAGAACCA 1331
Query 1412 CGAGAAGAGTGTTCAGTCGTGGCACTTGGACGGTTACTCCTTCTTTGCCGTCGCTGTCGA 1471
||||| |||||| ||||| ||||| |||||||| || |||||||| || || || || ||
Sbjct 1332 CGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCTGTAGCGGTTGA 1391
Query 1472 GCCAGGGACTTGGACCCCAGAGAAGAGAAAAAACTACAACCTGCTGGACGCAGTGAGCAG 1531
||||||||| ||||| ||||||||||| || ||||||||||| || |||||||||||| |
Sbjct 1392 GCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGACGCAGTGAGCCG 1451
Query 1532 ACACACAGTCCAAGTCTACCCAAAATGTTGGGCAGCAATCTTGCTCACATTCGACAACTG 1591
|||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1452 ACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACATTCGACAACTG 1511
Query 1592 TGGAATGTGGAACGTTCGATCTGAAAACTCCGAGAGACGCTACTTAGGACAGCAGCTTTA 1651
||||||||||||| || | || || ||||| |||||||| ||||| |||||||| || ||
Sbjct 1512 TGGAATGTGGAACATTAGGTCGGAGAACTCAGAGAGACGTTACTTGGGACAGCAACTGTA 1571
Query 1652 CGCGAGTGTCTTGTCACCAGAGAAATCACTGAGAGATGAATACAACATGCCTGAGACAAG 1711
||| || ||||||||||| || ||||| || | || |||||||||||||| ||||||||
Sbjct 1572 CGCAAGCGTCTTGTCACCGGAAAAATCTCTCCGGGACGAATACAACATGCCGGAGACAAG 1631
Query 1712 CCTCCAATGTGGTCTAGTGAAGGGTACA-CCTAAGCCTAACCCTTACGCTGGAGCCTAA 1769
||||||||||||||| || ||||| | | |||||| ||||||||| || ||||| |||
Sbjct 1632 CCTCCAATGTGGTCTCGTCAAGGGCA-AGCCTAAGGTTAACCCTTATGCCGGAGCTTAA 1689
> Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1
Length=1780
Score = 893 bits (483), Expect = 0.0
Identities = 1224/1569 (78%), Gaps = 101/1569 (6%)
Strand=Plus/Plus
Query 180 CCTTACTTCCA-T-CACGTATGGAACGTGACCTACGGAACCGT-GTCTCCTCTCGGTGTT 236
||||||||| | | |||| ||||||||||||||||||||||| | | ||||| || ||
Sbjct 103 CCTTACTTCTACTACACG--TGGAACGTGACCTACGGAACCGTCG-CGCCTCTGGGCATT 159
Query 237 CCACAACAAGTCATTCTCATCAACGGACAATTCCCTGGTCCC-AACGTCAACTCAACCTC 295
|| ||||| || ||||||||||||||||| |||||||| ||| ||| | ||||| |||||
Sbjct 160 CCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGG-CCCTAACCTAAACTCGACCTC 218
Query 296 CAACAACAACGTCATCATTAATGTCTTCAACAACCTCGACGAACCTTTCCTCCTCACATG 355
||||||||| ||| |||| ||||||||||||||||||||||| ||||||||| | || ||
Sbjct 219 CAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTG 278
Query 356 GAATGGGA-TCCAACACAGGAAGAACTGTTGGCAAGAT-G-G-GACTCCAGGAACTATGT 411
|| | ||| |||| ||||||||||||| ||||||||| | | |||| ||| || |
Sbjct 279 GAGT-GGACTCCAGCACAGGAAGAACTCCTGGCAAGATGGTGTGACT--GGGACCT-CAT 334
Query 412 GTCCGAT--CATGCCCGGCACCAACTACACTTACCATTTCCAGCCTAAGGATCAGATCGG 469
| || || || | | |||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 335 GCCCAATCCCA-G-CAGGCACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATTGG 392
Query 470 AAGCTATTTCTACTACCCCA-GCACCGCGATGCACCG-TTCCGCTGGTGGATTCGGTGGT 527
||||| |||||||| |||| |||||| | ||||| || ||| ||||| ||||||||
Sbjct 393 TAGCTACTTCTACTA-CCCATCCACCGCTCTCCACCGCTT-CGCCGGTGGTTTCGGTGGC 450
Query 528 CTCCGTGTGAACAGCCGTCTCCTCATCCCGGTCCCTTATGCTGACCCAGAAGATGACTAC 587
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| |
Sbjct 451 CTCCGTGTCAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCCGAAGACGACCGC 510
Query 588 ACCGTCTTGATCGGTGACTGGTACACCAAGAGCCACACC-CAGTTGAAGAAATTCCTTGA 646
||| || | ||| |||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 511 ACCATCCTCATCAACGACTGGTACACCAAGAGCCACACCGCTCTC-AAGAACTTCCTTGA 569
Query 647 CAGCGGTCGTACTCTTGG--CCGTCCAGATGGTATTCTCATCAACGG-AAAGTCCGGGAA 703
||| ||||| ||||| || || || || ||| ||||||||||||| ||| ||||| ||
Sbjct 570 CAGTGGTCGCACTCTAGGATCCC-CC-GACGGTGTTCTCATCAACGGGAAA-TCCGGTAA 626
Query 704 AGGCGATGGATCCGATGCACCTCTCTTTACCTTGAAACCTGGAAAGACCTACAGGGTT-A 762
| || ||| | | || |||||||| || |||| || |||||||| |||| | | |
Sbjct 627 AATCGGCGGAAACAACGCTCCTCTCTTCACAATGAAGCCCGGAAAGACTTACAAG-TACA 685
Query 763 GGATCTGTAACGTGGG-TCTCAAGA-C-ATCTCTTAACTTTAGGATTCAGAATC-ACAAG 818
||||||| || || || | |||| | | | |||||||||| ||||| || | | |||||
Sbjct 686 GGATCTGCAATGTTGGAT-TCAA-ATCCA-CTCTTAACTTCAGGATCCA-AGGCCACAAG 741
Query 819 TTGAAGCTTGTTGAGATGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCTCTCGAC 878
|||||||||||||||||||||| || ||||||||||||||||| || |||||||| ||
Sbjct 742 ATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTTGAT 801
Query 879 GTTCACGTTGGTCAGTG-TTACGGAACCATCCT--T-ACCGCTAATCAGGAAGCTAAAGA 934
|| || ||||| ||||| || || || | || | |||||| | || | || || ||
Sbjct 802 GTCCATGTTGGACAGTGCTT-CG---CCGTGCTAGTGACCGCTGACCAAGTGGCCAA-GA 856
Query 935 T-TACTACATGGTTGCATCCTCTAGGTTCTTGAAGTCGGTTA-TAACCACCACTGGTCTT 992
|||||||||||||||||| |||||||| | ||| || | | | ||| |||| |
Sbjct 857 ACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGA-AGTGAGCACTGTTGGTGTG 915
Query 993 CTCCGCTATGAGGGAGGCAAAGGTCCCGCTTCTT-CGCAGCTACCCCCTGG-TCCAGTCG 1050
| |||| || ||| |||| | || ||||| || || | |||| || ||| ||||
Sbjct 916 ATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAACG-AGAT-CCCCAAGGCTCCCGTCG 973
Query 1051 GCTGGGCTTGGTC-CTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACCGCCAGTGCA 1109
||||||||||||| || || |||||| |||| ||||| |||||||| |||||||||||
Sbjct 974 GCTGGGCTTGGTCTCTC-AATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGCC 1032
Query 1110 GCCAGGCCTAACCCTCAGGGATCTTACCACTACGGAAAGATCAACATCACACGCACCATC 1169
|| || ||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1033 GCTAGACCTAACCCTCAAGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCATC 1092
Query 1170 AAGCTTGTGAACACTCAAGGCAA---GGTCGA-TGGAAAGCTCAGGTACGCTTTGAACGG 1225
||||| | ||||| |||| || ||| || ||||||| |||||| | || |||||
Sbjct 1093 AAGCTCGCCAACAC-CAAG--AATTTGGT-GAATGGAAAGGTCAGGTTTGGGTTCAACGG 1148
Query 1226 AGTCTCGCACACTGACCCCGAAAC-CCCATTGAAGCTTGCGGAGTACTTTGGTGT-TGCC 1283
|| || ||| |||| |||| || ||| |||||||| || |||||||| ||| | | ||
Sbjct 1149 TGTGTCACACGTTGACACCGAGACTCCC-TTGAAGCTCGCTGAGTACTTCGGTATGT-CC 1206
Query 1284 GACAAGGTTTTCAAGTACGAC-TCCATCACTGAT-AACCCAACC-CCA-GAACA-AATCA 1338
|| ||||| ||||| ||| || || |||| || |||| | | ||| || || || ||
Sbjct 1207 GAGAAGGTCTTCAAATACAACGTC-ATCAAGGACGAACC-AGCAGCCAAGATCACAA-CA 1263
Query 1339 AGAGCATCAAGATCGTGCCAAATGTTCTTAACATCACTCACCGCACCTTCATCGAGGTGG 1398
| | || | ||| ||| ||||| || ||||||||| ||| ||||| |||| ||
Sbjct 1264 CTA--A-CA-G-TCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCA 1318
Query 1399 TGTTTGAGAACCACGAGAAGAGTGTTCAGTCGTGGCACTTGGACGGTTACTCCTTCTTTG 1458
| || |||||||||||||| || | || || | || |||||||||||||||||||| |
Sbjct 1319 TCTTCGAGAACCACGAGAAAAGCATGCAATCTTTCCATTTGGACGGTTACTCCTTCTTCG 1378
Query 1459 CCGTCGCTGTC-GAGCCAGGGACTTGGACCCCAGAGAAGAGAAAAAACTACAACCTGCTG 1517
| |||||| || |||||||| | ||||| |||||||||||||| ||||||||| ||||
Sbjct 1379 CTGTCGCT-TCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAAGAACTACAACTTGCTC 1437
Query 1518 GACGCAGTGAGCAGACACACAGTCCAAGTCTACCCAAAATGTTGGGCAGCAAT-CTTGCT 1576
|| || || ||||||||||| || || || ||||| |||| ||| |||| || || ||
Sbjct 1438 GATGCGGTTAGCAGACACACCGTGCAGGTGTACCCCAAATCCTGGTCAGCCATTCT--CT 1495
Query 1577 C-ACATTCGACAACTGT-GGAATGTGGAACGTTC-GATCTGAAAACTCCGAGAGACGCTA 1633
||||||||||| || || ||||||||| | | |||| || |||| |||||| | ||
Sbjct 1496 TGACATTCGACAA-TGCCGGTATGTGGAACAT-CAGATCAGAGAACTGGGAGAGAAGATA 1553
Query 1634 CTTAGGACAGCAGCTT-TACG-CGAGTGT-CTTGTCACCAGAGAAATCACTGAGAGATGA 1690
||| || ||||| || |||| | ||||| || |||||| || |||||||| ||||| ||
Sbjct 1554 CTTGGGCCAGCAA-TTGTACGTC-AGTGTTCT-GTCACCTGAAAAATCACTAAGAGACGA 1610
Query 1691 ATACAACAT 1699
||||||||
Sbjct 1611 GTACAACAT 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79951424255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5