BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13400.1
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1 3049 0.0
Ahg478720 jgi|Araly1|478720|fgenesh2_kg.3__1421__AT3G13390.1 798 0.0
> Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1
Length=1780
Score = 3049 bits (1651), Expect = 0.0
Identities = 1737/1780 (98%), Gaps = 0/1780 (0%)
Strand=Plus/Plus
Query 90 aaaaaaataaaaaGAAGCAGAAAAGAGATAATGCAGGGTGGTAGGCTTTTGACGGTGTTG 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAATAAAAAGAAGCAGAAAAGAGATAATGCAGGGTGGTAGGCTTTTGACGGTGTTG 60
Query 150 GTGTGCCTCGCCTCCACGGTGGCGTTGGTGAGCGCCGGTGACCCTTACTTCTACTACACG 209
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 GTGTGCCTCGCCTCCACGGTGGCGATGGTGAACGCCGGTGACCCTTACTTCTACTACACG 120
Query 210 TGGAACGTAACCTACGGAACCGCCGCGCCTCTCGGAATTCCTCAACAGGTGATTCTCATC 269
|||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 121 TGGAACGTGACCTACGGAACCGTCGCGCCTCTGGGCATTCCTCAACAGGTGATTCTCATC 180
Query 270 AACGGACAGTTCCCTGGTCCTAACCTAAACTCAACCTCCAACAACAATGTCGTCATCAAT 329
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AACGGACAGTTCCCTGGCCCTAACCTAAACTCGACCTCCAACAACAATGTCGTCATCAAT 240
Query 330 GTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGTGGACTCCAGCACAGGAAG 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGTGGACTCCAGCACAGGAAG 300
Query 390 AACTCATGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGCAGGCACCAACTTC 449
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACTCCTGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGCAGGCACCAACTTC 360
Query 450 ACTTACCATTTCCAGCCTAAGGACCAGATCGGTAGCTACTTCTACTACCCATCCACCGCT 509
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 ACTTACCATTTCCAGCCTAAGGACCAGATTGGTAGCTACTTCTACTACCCATCCACCGCT 420
Query 510 CTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCA 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCG 480
Query 570 GTCCCATACGCTGACCCCGAAGACGACCGCACCATCCTCATCAACGACTGGTACGCCAAG 629
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 GTCCCTTACGCTGACCCCGAAGACGACCGCACCATCCTCATCAACGACTGGTACACCAAG 540
Query 630 AGCCACACCGCCCTCAAGAACTTCCTTGACAGCGGACGTACTCTAGGATCCCCCGACGGT 689
||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 541 AGCCACACCGCTCTCAAGAACTTCCTTGACAGTGGTCGCACTCTAGGATCCCCCGACGGT 600
Query 690 GTTCTCATCAATGGGAAATCTGGTAAACTAGGCGGAAACAACGCTCCTCTCTTCACCATG 749
||||||||||| |||||||| |||||| | |||||||||||||||||||||||||| |||
Sbjct 601 GTTCTCATCAACGGGAAATCCGGTAAAATCGGCGGAAACAACGCTCCTCTCTTCACAATG 660
Query 750 AAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTGGATTCAAATCCACTCTTAAC 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTGGATTCAAATCCACTCTTAAC 720
Query 810 TTCAGGATCCAAGGACACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAG 869
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCAGGATCCAAGGCCACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAG 780
Query 870 AACGACTACGACTCTCTTGATGTCCACGTTGGACAGTGCTTCGCCGTTCTAGTGACCGCT 929
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 781 AACGACTACGACTCTCTTGATGTCCATGTTGGACAGTGCTTCGCCGTGCTAGTGACCGCT 840
Query 930 GACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTG 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTG 900
Query 990 AGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAGCGATATCCCC 1049
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 901 AGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAACGAGATCCCC 960
Query 1050 AAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTA 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTA 1020
Query 1110 ACCGCCAGTGCTGCTAGACCTAACCCCCAGGGATCTTACCATTACGGAAAGATCAACATC 1169
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1021 ACCGCCAGTGCCGCTAGACCTAACCCTCAAGGATCTTACCATTACGGAAAGATCAACATC 1080
Query 1170 ACCCGTACCATCAAGCTCGCCAACACCAAGAATTTGGTGAATGGAAAGGTCAGGTTTGGA 1229
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACCCGTACCATCAAGCTCGCCAACACCAAGAATTTGGTGAATGGAAAGGTCAGGTTTGGG 1140
Query 1230 TTCAACGGTGTATCACACGTTGACACCGAGACTCCCTTGAAGCTCGCTGAGTACTTCGGC 1289
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTCAACGGTGTGTCACACGTTGACACCGAGACTCCCTTGAAGCTCGCTGAGTACTTCGGT 1200
Query 1290 ATGTCCGAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACCAGCAGCCAAGATCACA 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATGTCCGAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACCAGCAGCCAAGATCACA 1260
Query 1350 ACACTAACCGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCGTC 1409
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 ACACTAACAGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCATC 1320
Query 1410 TTCGAGAACCACGAGAAAAGCATGCAATCCTTCCATTTGGACGGTTACTCCTTCTTCGCT 1469
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 TTCGAGAACCACGAGAAAAGCATGCAATCTTTCCATTTGGACGGTTACTCCTTCTTCGCT 1380
Query 1470 GTCGCTTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAACAACTACAACTTGCTCGAT 1529
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1381 GTCGCTTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAAGAACTACAACTTGCTCGAT 1440
Query 1530 GCCGTTAGCAGACACACCGTGCAGGTATACCCCAAATCCTGGTCAGCCATTCTCTTGACA 1589
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 GCGGTTAGCAGACACACCGTGCAGGTGTACCCCAAATCCTGGTCAGCCATTCTCTTGACA 1500
Query 1590 TTCGACAATGCCGGTATGTGGAACATCAGATCAGAGAACTGGGAGAGAAGATACTTGGGC 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTCGACAATGCCGGTATGTGGAACATCAGATCAGAGAACTGGGAGAGAAGATACTTGGGC 1560
Query 1650 CAGCAATTGTACGTCAGTGTTCTGTCCCCTGAAAAATCACTAAGAGACGAGTACAACATC 1709
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1561 CAGCAATTGTACGTCAGTGTTCTGTCACCTGAAAAATCACTAAGAGACGAGTACAACATC 1620
Query 1710 CCACTCAACACCAACCTTTGCGGCATCGTCAAGGGCTTGCCATTACCTACACCCTACACT 1769
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CCACTCAACACTAACCTTTGCGGCATCGTCAAGGGCTTGCCATTACCTACACCCTACACT 1680
Query 1770 ATTTAAACTCACTTCGACAAAGTTTTTTCAATTTATATGTAAAATTCTACTTTCCAAGTG 1829
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1681 ATTTAAACTCACTTCGACAAAGTTTTTTCTATTTATATGTAAAATTCTACTTTCCAAGTG 1740
Query 1830 AGTGTATTACGTGATTAATTAACCCTTTCCTAATTTCATT 1869
|||||| |||||||||||||||||||||||||||||||||
Sbjct 1741 AGTGTACTACGTGATTAATTAACCCTTTCCTAATTTCATT 1780
> Ahg478720 jgi|Araly1|478720|fgenesh2_kg.3__1421__AT3G13390.1
Length=2117
Score = 798 bits (432), Expect = 0.0
Identities = 1215/1578 (77%), Gaps = 113/1578 (7%)
Strand=Plus/Plus
Query 189 GACCCTTACTTCTACTACACG--TGGAACGTAACCTACGGAACCGCCG-CGCCTCTCGGA 245
|||||||||||| | | |||| |||||||| ||||||||||||| | | || |||||
Sbjct 180 GACCCTTACTTCCA-T-CACGTATGGAACGTGACCTACGGAACCG-TGTCTCCGCTCGGC 236
Query 246 ATTCCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGGTCCTAACCTAAACTCAACC 305
|||| ||||| || ||||| |||||||| || ||||||||||| ||| | |||||||||
Sbjct 237 GTTCCACAACAAGTCATTCTGATCAACGGCCAATTCCCTGGTCCCAACATCAACTCAACC 296
Query 306 TCCAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACC 365
||||||||||| || |||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 297 TCCAACAACAACATCATCATCAATGTCTTCAACAACCTCGACGAACCTTTCCTCCTCACA 356
Query 366 TGGAGTGG-ACTCCAGCACAGGAAGAACTCATGGCAAGATGGTGTGACTG--GGACCTCA 422
|||| ||| | |||| ||||||||||||| ||||||||||| | ||| ||| || |
Sbjct 357 TGGAATGGGA-TCCAACACAGGAAGAACTGTTGGCAAGATGG-G--ACTCCAGGAACT-A 411
Query 423 TGC--CC-A-A-TCCCAGCAGGCACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGA 477
|| || | | | || | |||||||||| |||||||||||||||||||||||| ||||
Sbjct 412 TGTGTCCGATAATGCC--C-GGCACCAACTACACTTACCATTTCCAGCCTAAGGATCAGA 468
Query 478 TCGGTAGCTACTTCTACTACCC-ATCCACCGCTCTC-CACCGCTTC-GCCGGTGGTTTCG 534
|||| ||||| ||||||||||| | | ||||| || ||||| ||| || ||||| ||||
Sbjct 469 TCGGAAGCTATTTCTACTACCCCAGC-ACCGC-CTTGCACCG-TTCTGCTGGTGGATTCG 525
Query 535 GTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCAGTCCCATACGCTGACCCCGAAGACG 594
|||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 526 GTGGACTCCGTGTGAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCAGAAGATG 585
Query 595 ACCGCACCATCCTCATCAACGACTGGTACGCCAAGAGCCACACCGCCCTC-AAGAACTTC 653
|| |||| || | ||| || |||||| | |||||||||||| | | ||||| |||
Sbjct 586 ACTACACCGTCTTGATCGGTGATTGGTACACTAAGAGCCACACC-CAATTGAAGAAATTC 644
Query 654 CTTGACAGCGGACGTACTCTAGGATCCC-CC-GACGGTGTTCTCATCAATGGGAAAT-CT 710
||||| |||| |||||||| || || || || ||| |||||||||| || ||| |
Sbjct 645 CTTGATGGCGGTCGTACTCTTGG--CCGTCCAGATGGTATTCTCATCAACGG-AAAGGCC 701
Query 711 GGTAAACTAGGCGGAAACAACGCTCCTCTCTTCACCATGAAGCCC-GGAAAGACTTACAA 769
|| ||| | ||| | | || |||||||| ||| ||| | || |||||||| ||||
Sbjct 702 GGGAAAGGCGATGGATCCGATGCACCTCTCTTTACCTTGA-GACCTGGAAAGACCTACAG 760
Query 770 G-TACAGGATCTGCAATGTTGGAT-TCAA-ATCCA-CTCTTAACTTCAGGATCCAAGGA- 824
| | ||| |||| || || || | |||| | | | |||||||||| ||||| || | |
Sbjct 761 GGTT-AGGGTCTGTAACGTGGG-TCTCAAGA-C-ATCTCTTAACTTTAGGATTCA-GAAT 815
Query 825 CACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCT 884
|||||| ||||||| |||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 816 CACAAGTTGAAGCTCGTTGAGATGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCT 875
Query 885 CTTGATGTCCACGTTGGACAGTGCTT-CG---CCGTTCTAGTGACCGCTGACCAAGTGGC 940
|| || || ||||| || ||||| || || || | || | ||||| | || | ||
Sbjct 876 CTCGACGTTCACGTCGGTCAGTG-TTACGGAACCATCCTT-T--CCGCTAATCAGGAAGC 931
Query 941 CAA-GAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGA-AGTGAGCACTGTT 998
|| || |||||||||||||||||| |||||||| | ||| || | | | ||||
Sbjct 932 TAAAGAT-TACTACATGGTTGCATCCTCTAGGTTCTTGAAGTCGGTTATT-ACCACTACC 989
Query 999 GGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAA-GC-GATATCCCCAAGGCTC 1056
||| | | |||| || ||| | || | | ||||| || | || |||| || ||
Sbjct 990 GGTCTTCTCCGCTATGAGGGAGGAAAAGGCCCCGCTTCTTCGCAGCTACCCCCT-GG-TC 1047
Query 1057 CCGTCGGCTGGGCTTGGTCTCTC-AATCAGTTCAGATCCTTCAGATGGAACTTAACCGCC 1115
| || |||||||||||||| || || |||||| |||| |||||||||||||| ||||||
Sbjct 1048 CAGTTGGCTGGGCTTGGTC-CTTGAACCAGTTCCGATCTTTCAGATGGAACTTGACCGCC 1106
Query 1116 AGTGCTGCTAGACCTAACCCCCAGGGATCTTACCATTACGGAAAGATCAACATCACCCGT 1175
||||| || || |||||||| ||||| |||||||| ||||||||||||||||| || ||
Sbjct 1107 AGTGCGGCCAGGCCTAACCCTCAGGGTTCTTACCACTACGGAAAGATCAACATTACACGC 1166
Query 1176 ACCATCAAGCTCGCCAACAC-CAAG--AATTTGGTGAATGGAAAGGTCAGGTTTG-GATT 1231
||||||||||| | ||||| |||| || ||| ||||||||| |||||| | | ||
Sbjct 1167 ACCATCAAGCTTGTGAACACTCAAGGCAA---GGTCAATGGAAAGCTCAGGTACGCG-TT 1222
Query 1232 CAACGGTGTATCACACGTTGACACC-GAGACTCCC-TTGAAGCTCGCTGAGTACTTCGGC 1289
||||| || || ||| |||| || || || ||| |||||||| || |||||||| ||
Sbjct 1223 GAACGGAGTCTCGCACACTGAC-CCTGAAAC-CCCATTGAAGCTTGCCGAGTACTTTGGT 1280
Query 1290 AT-GTCCGAGAAGGTCTTCAAATACAAC-GTCATCAAGGACGAACC-AGC---AGC-CAA 1342
| | |||| ||||| ||||| ||| || | ||||| || |||| | | || |||
Sbjct 1281 GTTG-CCGACAAGGTTTTCAAGTACGACAG-CATCACTGAT-AACCCAACCCCAGAACAA 1337
Query 1343 GATCACA-A-CA-CTAACCGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGT 1399
|||| | | || | || ||||||| ||||| || ||||||||| ||| ||||| |
Sbjct 1338 -ATCA-AGAGCATC-AAGA-TCGAGCCAAATGTTCTTAACATCACTCACCGCACCTTCAT 1393
Query 1400 CGAAGTCGTCTTCGAGAACCACGAGAAAAGCATGCAATCCTTCCATTTGGACGGTTACTC 1459
||| || || || |||||||||||||| || | || || | || ||||||||||||||
Sbjct 1394 CGAGGTGGTGTTTGAGAACCACGAGAAGAGTGTTCAGTCGTGGCACTTGGACGGTTACTC 1453
Query 1460 CTTCTTCGCTGTCGCT-TCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAACAACTACA 1518
|||||| || |||||| || |||||||| | ||||| |||||||||||||| |||||||
Sbjct 1454 CTTCTTTGCCGTCGCTGTC-GAGCCAGGGACTTGGACTCCAGAGAAGAGAAAGAACTACA 1512
Query 1519 AC-TTGCTCGATGCCGTTAGCAGACACACCGTGCAGGTATACCCCAAATCCTGGTCAGCC 1577
|| || || || || || ||||||||||| || || || ||||| |||| ||| ||||
Sbjct 1513 ACCTT-CTGGACGCAGTGAGCAGACACACAGTCCAAGTCTACCCAAAATGTTGGGCAGCA 1571
Query 1578 ATTCT--CTTGACATTCGACAA-TGCCGGTATGTGGAACAT-CAGATCAGAGAACTGGGA 1633
|| || || ||||||||||| || || ||||||||||| | |||| || |||| ||
Sbjct 1572 AT-CTTGCTC-ACATTCGACAACTGT-GGAATGTGGAACATTC-GATCTGAAAACTCCGA 1627
Query 1634 GAGAAGATACTTGGGCCAGCAA-TTGTACGTC-AGTGTTCT-GTCCCCTGAAAAATCACT 1690
|||| | ||||| || ||||| || |||| | ||||| || ||| || || ||||||||
Sbjct 1628 GAGACGTTACTTAGGACAGCAGCTT-TACG-CGAGTGT-CTTGTCACCAGAGAAATCACT 1684
Query 1691 AAGAGACGAGTACAACAT 1708
||||| || ||||||||
Sbjct 1685 GAGAGATGAATACAACAT 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71304938640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5