BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13410.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478722 jgi|Araly1|478722|fgenesh2_kg.3__1423__AT3G13410.1 2028 0.0
Ahg314773 jgi|Araly1|314773|fgenesh1_pm.C_scaffold_1003553 1031 0.0
Ahg898066 jgi|Araly1|898066|Al_scaffold_0005_2032 335 6e-91
Ahg334493 jgi|Araly1|334493|fgenesh1_pg.C_scaffold_1001058 324 1e-87
> Ahg478722 jgi|Araly1|478722|fgenesh2_kg.3__1423__AT3G13410.1
Length=1246
Score = 2028 bits (1098), Expect = 0.0
Identities = 1198/1247 (96%), Gaps = 4/1247 (0%)
Strand=Plus/Plus
Query 127 ATTGTTTCGACGACGAAGATGAAGAAGATTCAAATTGGTGCGGTGGCGCTATTGGTGTTT 186
|||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||| |
Sbjct 2 ATTGTTCCGACGACGAAGATGATGAAGATTCAAATTGGTGCGCTGGCGTTATTGGTGGCT 61
Query 187 CTATCTGTGGCCTCTCTCTTTGAAATCGGATTGGCTTCTCCGAACACAGTTCCTGCTTTC 246
||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||
Sbjct 62 CTATCTGTGGCCTCTCTCTGTGAAATTGGATTGGCTTCTCCAAACACCGTTCCTGCTTTC 121
Query 247 CTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAGGCTGTAAATTATCAG 306
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 122 CTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAGGTTGTAAATTATCAG 181
Query 307 GTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTT 366
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 182 GTCATGTCTGCAAAGGATCTAGTAGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTT 241
Query 367 CTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGCAGA 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 242 CTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGAAGA 301
Query 427 GAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCTGCCCTTGTTAACACA 486
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 302 GAGTTACTGTCTTCTGATGTTTCTTCTAAAAGGAACTCGGATTCTGCCCTTGTTAACACA 361
Query 487 TTGAATAATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCTCCA 546
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 TTGAGTAATCTGTTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCGCCA 421
Query 547 GAGGAAGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAAT 606
|||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||
Sbjct 422 GAGGAAGAAAGGATGGAGAATTTGTTGCTATCAGGACTTAAAGAAGCTTGCCCCAACAAT 481
Query 607 GTAGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAG 666
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GTTGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAG 541
Query 667 AAACTTTCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAACAAGGAAA 726
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AAACTATCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAACAAGGAAA 601
Query 727 GAAGGAGAAACTGACTTGGTTGTGCTCTGTTCCGAGGGTTCTGAATCGAATAGTCAAGCT 786
|||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 602 GAAGGAGAAACTGATTTGGTTGTGCTTTGTTCCGAGGGTTCTGAATCAAAAAGTCAAGCT 661
Query 787 GGACAGTCACATTCAGAGCGTGAAAGCTTCTTGGAACTTGTTAGTTCTGTAGAACAATCC 846
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 662 GGACAGTCACACTCAGAGCGTGAAAGCATCTTGGAACTTGTTAGTTCTGTAGAACAATCC 721
Query 847 GGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTTATTGGTACACATCTTACAAAACT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTTATTGGTACACATCTTACAAAACT 781
Query 907 CTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACAGTACTCCTGAAATTGCTACTGGC 966
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |
Sbjct 782 CTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACAGCACTCCTGAAGTTGCAACTGCC 841
Query 967 TGTGATGAACTCTGCAAATTTAAGTCATCACTTTTGGAGGGCATACTAGTGGGAATCGTT 1026
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 842 TGTGATGAACTCTGCAAATTTAAGTCATCACTCTTGGAGGGTATACTAGTGGGAATCGTT 901
Query 1027 TTTCTTCTCATCTTGATCAGTGGACTTTGCTGTATGGCGGGTATCGATACACCGACTAGA 1086
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 902 TTTCTTCTCATCTTGATCAGTGGACTTTGTTGTATGGCGGGTATTGATACACCGACTAGA 961
Query 1087 TTCGAGACTCCTCAAGATTCTTAAGCTGTTGACCTTAAGAGCCATCCCC-ACCTTTTGCT 1145
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 962 TTCGAGACTCCTCAAGATTCTTAAGCTGTTGACCTTAAGAGCCATCCCCCACCTTTTGCT 1021
Query 1146 TTGCTTTTGACGAGTCTTTTCTTGTGCATAGTGCGCATTGTGGAAGGTACTTCAATGTCG 1205
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TTGTTTTTGACGAGTCTTTTCTTGTGCATAGTGCGCATTGTGGAAGGTACTTCAATGTCG 1081
Query 1206 ATTTGTTACATTATTACTTCAAAA-CAAAATCTGCATATGCCATAAAATCCCCTTGTATC 1264
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1082 ATTTGTTACATTATTACTTCAAAAACAAAATCTGCATATGCCATAAAATCCCCTTGTATC 1141
Query 1265 ATTTATTCATCTTGTTTGTGAGTCTTTCTTAAACGTCATAAATTAATAATGGAGAACGAG 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 ATTTATTCATCTTGTTTGTGAGTCTTTCTTAAACGTCATAAATTAATAATGGAGAACGAG 1201
Query 1325 TAAAAAACCAGAGATACATACACTGGAGAACGGATTACATTCttttt 1371
||||||| | ||| | ||||||||||||||||||||||| |||||
Sbjct 1202 TAAAAAAATACAGAGA--TACACTGGAGAACGGATTACATTGTTTTT 1246
> Ahg314773 jgi|Araly1|314773|fgenesh1_pm.C_scaffold_1003553
Length=942
Score = 1031 bits (558), Expect = 0.0
Identities = 782/888 (88%), Gaps = 24/888 (3%)
Strand=Plus/Plus
Query 232 ACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAG 291
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 70 ACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAAATGGATG-- 127
Query 292 GCTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGA 351
| ||||||||| || |||||||||||||||||||| | |||||||| |||||||||
Sbjct 128 --T--AAATTATCAAGTTATGTCTGCAAAGGATCTAGTAGACTCTGTTTTTACTCAAGGA 183
Query 352 GGTTGGTCAAACTTTCTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTT 411
|| ||||| || ||||||||||| ||||| || ||| ||||||||||||||||||||||
Sbjct 184 GGCTGGTCTAATTTTCTGTGCTCGGAGAAAAACCTTCAGCAACCTGTTGATGTTGCACTC 243
Query 412 GTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCT 471
|||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 244 GTGTTCATTGGCAGAGAGTTACTGTCTTCAGATGTTTCTTCAAATCGGAACTCGGATCCT 303
Query 472 GCCCTTGTTAACACATTGAATAATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCA 531
||||||||||| | ||||| ||||| | |||||||||||| |||||||||||||||||
Sbjct 304 GCCCTTGTTAATATTTTGAAGAATCTGTATACAGCTTCCAATTTCTCATTGGCATTCCCG 363
Query 532 TATATTGCTGCTCCAGAGGAAGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAA 591
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 364 TATATTGCTGCACCAGAGGAGGAAAGGATGGAAAATTTGTTGCTTTCAGGGCTTAAAGAA 423
Query 592 GCTTGTCC-CAACAATGTAGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTT-GTTG 649
|||||| | || |||||||||||||| |||| ||||||||||||| ||||| ||| ||||
Sbjct 424 GCTTGTGCTCA-CAATGTAGGAGTCACCAATGTCGTGTTCTCAGACTCGTG-TTTCGTTG 481
Query 650 AGGATGGAACAATTCAGAAACTTTCAGACT-TGCAGTCTTTCAAAGATCATTT-GCTTGC 707
|||||||||||||||||||||| || || | |||||||||||||||||||||| | ||||
Sbjct 482 AGGATGGAACAATTCAGAAACTATC-GAATGTGCAGTCTTTCAAAGATCATTTAG-TTGC 539
Query 708 TAGAAGAGAAACAAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCCGAGGGTTC 767
||||| |||||| || |||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 540 TAGAAAAGAAACGAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGCTCTGGGGGATC 599
Query 768 TGAATCGAAT-A-GTCAAGCTGGAC-AGTCACATTCAGAGCGTGAAAGCTTCT-TGGAAC 823
|||||| | | | ||||| ||| || ||||||||||||| ||||||| | ||| || | |
Sbjct 600 TGAATC-A-TCAAGTCAATCTG-ACCAGTCACATTCAGATCGTGAAATCATCTCTG-AGC 655
Query 824 TTGTTAGTTCTGTAGAACAATCCGGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTT 883
|||||||||| || || || || | | |||||| |||||||| ||||||||||||||||
Sbjct 656 TTGTTAGTTCAGTGGAGCAGTCTGAAACTAAATACACAGCTCTATATGTTTCTGATCCTT 715
Query 884 ATTGGTACACATCTTACAAAACTCTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACA 943
|||||||||| || ||| ||||||||||||||||| | |||||| | |||| ||||||||
Sbjct 716 ATTGGTACACTTCATACCAAACTCTCCAAAGGTTTTTGGCTGAAGCCGCTACAGGAAACA 775
Query 944 GTACTCCTGAAATTGCTACTGGCTGTGATGAACTCTGCAAATTTAAGTCATCACTTTTGG 1003
|| ||||| | |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 776 CCACAGCTGAAGCTACTACAACCTGTGATGAACTCTGCAAATTTAAGTCATCACTCTTGG 835
Query 1004 AGGGCATACT-AGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGCTGTATG 1062
|||| || || |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 836 AGGGTAT-CTTAGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGTTGTATG 894
Query 1063 GCGGGTATCGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA 1110
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCGGGTATTGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA 942
> Ahg898066 jgi|Araly1|898066|Al_scaffold_0005_2032
Length=570
Score = 335 bits (181), Expect = 6e-91
Identities = 202/212 (95%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 286 GATGAGGCTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACT 345
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GATGAGGTTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTAGGTTCTGTTTTCACT 60
Query 346 CAAGGAGGTTGGTCAAACTTTCTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTT 405
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 61 CAAGGAGGTTGGTCAAACTTTCTGTTCTCAGAGAAGAAGCTTGAGCAACGTGTTGATGTT 120
Query 406 GCACTTGTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCA 465
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GTACTTGTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCTAAAAGGAACTCG 180
Query 466 GATCCTGCCCTTGTTAACACATTGAATAATCT 497
||| ||||||||||||||||||||| || |||
Sbjct 181 GATTCTGCCCTTGTTAACACATTGAGTA-TCT 211
Score = 324 bits (175), Expect = 1e-87
Identities = 194/203 (96%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 493 AATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGC-TCCAGAGGA 551
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 274 AATCTGTTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCGTC-AGAGGA 332
Query 552 AGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAATGTAGG 611
||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| ||
Sbjct 333 AGAAAGGATGGAGAATTTGTTGCTATCAGGACTTAAAGAAGCTTGCCCCAACAATGTTGG 392
Query 612 AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAGAAACT 671
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 393 AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGCATGGAACAATTCAGAAACT 452
Query 672 TTCAGACTTGCAGTCTTTCAAAG 694
|||||||||||||||||||||||
Sbjct 453 TTCAGACTTGCAGTCTTTCAAAG 475
> Ahg334493 jgi|Araly1|334493|fgenesh1_pg.C_scaffold_1001058
Length=519
Score = 324 bits (175), Expect = 1e-87
Identities = 194/203 (96%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 493 AATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGC-TCCAGAGGA 551
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 250 AATCTGTTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCGTC-AGAGGA 308
Query 552 AGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAATGTAGG 611
||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| ||
Sbjct 309 AGAAAGGATGGAGAATTTGTTGCTATCAGGACTTAAAGAAGCTTGCCCCAACAATGTTGG 368
Query 612 AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAGAAACT 671
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 369 AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGCATGGAACAATTCAGAAACT 428
Query 672 TTCAGACTTGCAGTCTTTCAAAG 694
|||||||||||||||||||||||
Sbjct 429 TTCAGACTTGCAGTCTTTCAAAG 451
Score = 302 bits (163), Expect = 6e-81
Identities = 180/188 (96%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 310 ATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTTCTG 369
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGCAAAGGATCTAGTAGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTTCTG 60
Query 370 TGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGCAGAGAG 429
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTCAGAGAAGAAGCTTGAGCAACGTGTTGATGTTGCACTTGTGTTCATAGGCAGAGAG 120
Query 430 TTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCTGCCCTTGTTAACACATTG 489
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 121 TTACTGTCTTCTGATGTTTCTTCTAAAAGGAACTCGGATTCTGCCCTTGTTAACACATTG 180
Query 490 AATAATCT 497
| || |||
Sbjct 181 AGTA-TCT 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5