BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13410.1 Length=1402 Score E Sequences producing significant alignments: (Bits) Value Ahg478722 jgi|Araly1|478722|fgenesh2_kg.3__1423__AT3G13410.1 2028 0.0 Ahg314773 jgi|Araly1|314773|fgenesh1_pm.C_scaffold_1003553 1031 0.0 Ahg898066 jgi|Araly1|898066|Al_scaffold_0005_2032 335 6e-91 Ahg334493 jgi|Araly1|334493|fgenesh1_pg.C_scaffold_1001058 324 1e-87 > Ahg478722 jgi|Araly1|478722|fgenesh2_kg.3__1423__AT3G13410.1 Length=1246 Score = 2028 bits (1098), Expect = 0.0 Identities = 1198/1247 (96%), Gaps = 4/1247 (0%) Strand=Plus/Plus Query 127 ATTGTTTCGACGACGAAGATGAAGAAGATTCAAATTGGTGCGGTGGCGCTATTGGTGTTT 186 |||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||| | Sbjct 2 ATTGTTCCGACGACGAAGATGATGAAGATTCAAATTGGTGCGCTGGCGTTATTGGTGGCT 61 Query 187 CTATCTGTGGCCTCTCTCTTTGAAATCGGATTGGCTTCTCCGAACACAGTTCCTGCTTTC 246 ||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| Sbjct 62 CTATCTGTGGCCTCTCTCTGTGAAATTGGATTGGCTTCTCCAAACACCGTTCCTGCTTTC 121 Query 247 CTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAGGCTGTAAATTATCAG 306 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 122 CTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAGGTTGTAAATTATCAG 181 Query 307 GTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTT 366 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 182 GTCATGTCTGCAAAGGATCTAGTAGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTT 241 Query 367 CTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGCAGA 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 242 CTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGAAGA 301 Query 427 GAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCTGCCCTTGTTAACACA 486 |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| Sbjct 302 GAGTTACTGTCTTCTGATGTTTCTTCTAAAAGGAACTCGGATTCTGCCCTTGTTAACACA 361 Query 487 TTGAATAATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCTCCA 546 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 362 TTGAGTAATCTGTTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCGCCA 421 Query 547 GAGGAAGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAAT 606 |||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||| Sbjct 422 GAGGAAGAAAGGATGGAGAATTTGTTGCTATCAGGACTTAAAGAAGCTTGCCCCAACAAT 481 Query 607 GTAGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAG 666 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 GTTGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAG 541 Query 667 AAACTTTCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAACAAGGAAA 726 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 AAACTATCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAACAAGGAAA 601 Query 727 GAAGGAGAAACTGACTTGGTTGTGCTCTGTTCCGAGGGTTCTGAATCGAATAGTCAAGCT 786 |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||| Sbjct 602 GAAGGAGAAACTGATTTGGTTGTGCTTTGTTCCGAGGGTTCTGAATCAAAAAGTCAAGCT 661 Query 787 GGACAGTCACATTCAGAGCGTGAAAGCTTCTTGGAACTTGTTAGTTCTGTAGAACAATCC 846 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 662 GGACAGTCACACTCAGAGCGTGAAAGCATCTTGGAACTTGTTAGTTCTGTAGAACAATCC 721 Query 847 GGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTTATTGGTACACATCTTACAAAACT 906 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTTATTGGTACACATCTTACAAAACT 781 Query 907 CTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACAGTACTCCTGAAATTGCTACTGGC 966 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| | Sbjct 782 CTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACAGCACTCCTGAAGTTGCAACTGCC 841 Query 967 TGTGATGAACTCTGCAAATTTAAGTCATCACTTTTGGAGGGCATACTAGTGGGAATCGTT 1026 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 842 TGTGATGAACTCTGCAAATTTAAGTCATCACTCTTGGAGGGTATACTAGTGGGAATCGTT 901 Query 1027 TTTCTTCTCATCTTGATCAGTGGACTTTGCTGTATGGCGGGTATCGATACACCGACTAGA 1086 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 902 TTTCTTCTCATCTTGATCAGTGGACTTTGTTGTATGGCGGGTATTGATACACCGACTAGA 961 Query 1087 TTCGAGACTCCTCAAGATTCTTAAGCTGTTGACCTTAAGAGCCATCCCC-ACCTTTTGCT 1145 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 962 TTCGAGACTCCTCAAGATTCTTAAGCTGTTGACCTTAAGAGCCATCCCCCACCTTTTGCT 1021 Query 1146 TTGCTTTTGACGAGTCTTTTCTTGTGCATAGTGCGCATTGTGGAAGGTACTTCAATGTCG 1205 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 TTGTTTTTGACGAGTCTTTTCTTGTGCATAGTGCGCATTGTGGAAGGTACTTCAATGTCG 1081 Query 1206 ATTTGTTACATTATTACTTCAAAA-CAAAATCTGCATATGCCATAAAATCCCCTTGTATC 1264 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1082 ATTTGTTACATTATTACTTCAAAAACAAAATCTGCATATGCCATAAAATCCCCTTGTATC 1141 Query 1265 ATTTATTCATCTTGTTTGTGAGTCTTTCTTAAACGTCATAAATTAATAATGGAGAACGAG 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1142 ATTTATTCATCTTGTTTGTGAGTCTTTCTTAAACGTCATAAATTAATAATGGAGAACGAG 1201 Query 1325 TAAAAAACCAGAGATACATACACTGGAGAACGGATTACATTCttttt 1371 ||||||| | ||| | ||||||||||||||||||||||| ||||| Sbjct 1202 TAAAAAAATACAGAGA--TACACTGGAGAACGGATTACATTGTTTTT 1246 > Ahg314773 jgi|Araly1|314773|fgenesh1_pm.C_scaffold_1003553 Length=942 Score = 1031 bits (558), Expect = 0.0 Identities = 782/888 (88%), Gaps = 24/888 (3%) Strand=Plus/Plus Query 232 ACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAG 291 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 70 ACAGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAAATGGATG-- 127 Query 292 GCTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGA 351 | ||||||||| || |||||||||||||||||||| | |||||||| ||||||||| Sbjct 128 --T--AAATTATCAAGTTATGTCTGCAAAGGATCTAGTAGACTCTGTTTTTACTCAAGGA 183 Query 352 GGTTGGTCAAACTTTCTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTT 411 || ||||| || ||||||||||| ||||| || ||| |||||||||||||||||||||| Sbjct 184 GGCTGGTCTAATTTTCTGTGCTCGGAGAAAAACCTTCAGCAACCTGTTGATGTTGCACTC 243 Query 412 GTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCT 471 |||||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||| Sbjct 244 GTGTTCATTGGCAGAGAGTTACTGTCTTCAGATGTTTCTTCAAATCGGAACTCGGATCCT 303 Query 472 GCCCTTGTTAACACATTGAATAATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCA 531 ||||||||||| | ||||| ||||| | |||||||||||| ||||||||||||||||| Sbjct 304 GCCCTTGTTAATATTTTGAAGAATCTGTATACAGCTTCCAATTTCTCATTGGCATTCCCG 363 Query 532 TATATTGCTGCTCCAGAGGAAGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAA 591 ||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct 364 TATATTGCTGCACCAGAGGAGGAAAGGATGGAAAATTTGTTGCTTTCAGGGCTTAAAGAA 423 Query 592 GCTTGTCC-CAACAATGTAGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTT-GTTG 649 |||||| | || |||||||||||||| |||| ||||||||||||| ||||| ||| |||| Sbjct 424 GCTTGTGCTCA-CAATGTAGGAGTCACCAATGTCGTGTTCTCAGACTCGTG-TTTCGTTG 481 Query 650 AGGATGGAACAATTCAGAAACTTTCAGACT-TGCAGTCTTTCAAAGATCATTT-GCTTGC 707 |||||||||||||||||||||| || || | |||||||||||||||||||||| | |||| Sbjct 482 AGGATGGAACAATTCAGAAACTATC-GAATGTGCAGTCTTTCAAAGATCATTTAG-TTGC 539 Query 708 TAGAAGAGAAACAAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCCGAGGGTTC 767 ||||| |||||| || |||||||||||||||||||||||||||||||| || | ||| || Sbjct 540 TAGAAAAGAAACGAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGCTCTGGGGGATC 599 Query 768 TGAATCGAAT-A-GTCAAGCTGGAC-AGTCACATTCAGAGCGTGAAAGCTTCT-TGGAAC 823 |||||| | | | ||||| ||| || ||||||||||||| ||||||| | ||| || | | Sbjct 600 TGAATC-A-TCAAGTCAATCTG-ACCAGTCACATTCAGATCGTGAAATCATCTCTG-AGC 655 Query 824 TTGTTAGTTCTGTAGAACAATCCGGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTT 883 |||||||||| || || || || | | |||||| |||||||| |||||||||||||||| Sbjct 656 TTGTTAGTTCAGTGGAGCAGTCTGAAACTAAATACACAGCTCTATATGTTTCTGATCCTT 715 Query 884 ATTGGTACACATCTTACAAAACTCTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACA 943 |||||||||| || ||| ||||||||||||||||| | |||||| | |||| |||||||| Sbjct 716 ATTGGTACACTTCATACCAAACTCTCCAAAGGTTTTTGGCTGAAGCCGCTACAGGAAACA 775 Query 944 GTACTCCTGAAATTGCTACTGGCTGTGATGAACTCTGCAAATTTAAGTCATCACTTTTGG 1003 || ||||| | |||| ||||||||||||||||||||||||||||||||| |||| Sbjct 776 CCACAGCTGAAGCTACTACAACCTGTGATGAACTCTGCAAATTTAAGTCATCACTCTTGG 835 Query 1004 AGGGCATACT-AGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGCTGTATG 1062 |||| || || |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 836 AGGGTAT-CTTAGTGGGAATCGTTTTTCTTCTCATCTTGATCAGTGGACTTTGTTGTATG 894 Query 1063 GCGGGTATCGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA 1110 |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 895 GCGGGTATTGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAA 942 > Ahg898066 jgi|Araly1|898066|Al_scaffold_0005_2032 Length=570 Score = 335 bits (181), Expect = 6e-91 Identities = 202/212 (95%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 286 GATGAGGCTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACT 345 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 GATGAGGTTGTAAATTATCAGGTCATGTCTGCAAAGGATCTAGTAGGTTCTGTTTTCACT 60 Query 346 CAAGGAGGTTGGTCAAACTTTCTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTT 405 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 61 CAAGGAGGTTGGTCAAACTTTCTGTTCTCAGAGAAGAAGCTTGAGCAACGTGTTGATGTT 120 Query 406 GCACTTGTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCA 465 | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 GTACTTGTGTTCATAGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCTAAAAGGAACTCG 180 Query 466 GATCCTGCCCTTGTTAACACATTGAATAATCT 497 ||| ||||||||||||||||||||| || ||| Sbjct 181 GATTCTGCCCTTGTTAACACATTGAGTA-TCT 211 Score = 324 bits (175), Expect = 1e-87 Identities = 194/203 (96%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 493 AATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGC-TCCAGAGGA 551 ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 274 AATCTGTTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCGTC-AGAGGA 332 Query 552 AGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAATGTAGG 611 ||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| || Sbjct 333 AGAAAGGATGGAGAATTTGTTGCTATCAGGACTTAAAGAAGCTTGCCCCAACAATGTTGG 392 Query 612 AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAGAAACT 671 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 393 AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGCATGGAACAATTCAGAAACT 452 Query 672 TTCAGACTTGCAGTCTTTCAAAG 694 ||||||||||||||||||||||| Sbjct 453 TTCAGACTTGCAGTCTTTCAAAG 475 > Ahg334493 jgi|Araly1|334493|fgenesh1_pg.C_scaffold_1001058 Length=519 Score = 324 bits (175), Expect = 1e-87 Identities = 194/203 (96%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 493 AATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGC-TCCAGAGGA 551 ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 250 AATCTGTTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCGTC-AGAGGA 308 Query 552 AGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAATGTAGG 611 ||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| || Sbjct 309 AGAAAGGATGGAGAATTTGTTGCTATCAGGACTTAAAGAAGCTTGCCCCAACAATGTTGG 368 Query 612 AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAGAAACT 671 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 369 AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGCATGGAACAATTCAGAAACT 428 Query 672 TTCAGACTTGCAGTCTTTCAAAG 694 ||||||||||||||||||||||| Sbjct 429 TTCAGACTTGCAGTCTTTCAAAG 451 Score = 302 bits (163), Expect = 6e-81 Identities = 180/188 (96%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 310 ATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTTCTG 369 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTGCAAAGGATCTAGTAGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTTCTG 60 Query 370 TGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGCAGAGAG 429 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 TTCTCAGAGAAGAAGCTTGAGCAACGTGTTGATGTTGCACTTGTGTTCATAGGCAGAGAG 120 Query 430 TTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCTGCCCTTGTTAACACATTG 489 ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| Sbjct 121 TTACTGTCTTCTGATGTTTCTTCTAAAAGGAACTCGGATTCTGCCCTTGTTAACACATTG 180 Query 490 AATAATCT 497 | || ||| Sbjct 181 AGTA-TCT 187 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52412177120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5