BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13420.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478723 jgi|Araly1|478723|fgenesh2_kg.3__1424__AT3G13420.1 1999 0.0
> Ahg478723 jgi|Araly1|478723|fgenesh2_kg.3__1424__AT3G13420.1
Length=1589
Score = 1999 bits (1082), Expect = 0.0
Identities = 1473/1646 (89%), Gaps = 89/1646 (5%)
Strand=Plus/Plus
Query 1 CTTCTGCAACGCGATCCCGCCAAAGACACTCTTTACTTTCTCCCTCACGAAAATTCTCAA 60
|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 1 CTTCTGCAACGCGATCCCGCCAAAGAAACTC-TTA-----TCCCTCACGAAAATTCTCAA 54
Query 61 ATCGTCGTTCTCTCTTGATTCACCGATTTCGTTCGCCGGAAAATTGCAATTT-AGCATCA 119
||||||||||||||| | ||||||| ||||||| ||||| |||||||||||| || ||||
Sbjct 55 ATCGTCGTTCTCTCTCGCTTCACCGGTTTCGTTAGCCGGGAAATTGCAATTTAAG-ATCA 113
Query 120 GAATCGTCGAGCCATTTTGTATTATGAA-AGTCCATTGAAGTAACAAGTAACGA--G-AG 175
|||||||||||||||||||| | | ||| || ||||| ||||||||||||||| | ||
Sbjct 114 GAATCGTCGAGCCATTTTGTCTAAGGAAGAG-ACATTGGAGTAACAAGTAACGAGGGCAG 172
Query 176 CT-GCGAGGTTGAGATTTTACGATGCTTTGTGTTTCGTTACGAAATCGAATACATAATTG 234
|| | ||||||||||||||||||||||||||||||| ||||||||| |||| || |||||
Sbjct 173 CTAG-GAGGTTGAGATTTTACGATGCTTTGTGTTTCTTTACGAAATAGAATTCACAATTG 231
Query 235 GCTTCGCGACTACGTTAGGCTCCAATCTGTCGTTTTGATTCTTATCTATGCTCAGATAGG 294
||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 232 GCTTCGCGACTACGTCAGGCTCCAATCTGTCGTCGTGATTCTTATCTACGCTCAGATAGG 291
Query 295 GTGCGCGTTGATCGGTTCACTAGGGGCATTGTACAATGGAGTCGTGCTGATAAATTTGGC 354
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 292 GTGCGCGTTGATCGGTTCACTAGGGGCATTGTACAATGGAGTCTTGCTGATAAATTTGGC 351
Query 355 GATTGCGTTATTTGGGTTAGTAGCAATCGAGAGTAATAGCCAAAGTCTTGGCAGAACCTA 414
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 352 GATTGCGTTATTTGGGTTAGTGGCAATCGAGAGTAATAGCCAGAGTCTTGGCAGAACCTA 411
Query 415 TGCGGTTCTTCTTTTCTGCGCCATTCTTCTTGATGTCTCATGGTTCATTCTCTTCTCCAA 474
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 412 TGCGGTTCTTCTTTTCTGCGCCATTCTTCTTGATGTCTCATGGTTCATACTCTTCTCCAA 471
Query 475 AGAGATTTGGAACATTTCATCTGATATGTATCAAGTCTTTTACATCTTCTCTGTGAAACT 534
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 472 CGAGATTTGGAACATTTCTTCTGAGATGTATCAAGTCTTTTACATCTTCTCTGTGAAACT 531
Query 535 CACCCTGGCTATGGAAATTGCTGGGTTCGTTGTGAGGCTATCGTCCTCTCTGTTATGGTT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CACCCTGGCTATGGAAATTGCTGGGTTCGTTGTGAGGCTATCGTCCTCTCTGTTATGGTT 591
Query 595 TCAGATCTATAGGCTGGGAGCTTCTATTATAGACTCTCCATTTCCCCGTCAATCAGATTC 654
||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||
Sbjct 592 TCAGATCTATAGGCTGGGAGCTTCTATTATAGACTCTTCGTTTCCCCGTCAACCTGATTC 651
Query 655 AGATTTACGGAATAGCTTCTTAGAACCTCCTCTTTTAGCTAGGCAACGTTCACGTGATCC 714
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGATTTACGAAATAGCTTCTTAGAACCTCCTCTTTTAGCTAGGCAACGTTCACGTGATCC 711
Query 715 AGAATTACGAAATAGCTTCTTACAGGCTCCTGCTATAGCTAAGCAACGTTCACGTTCTGA 774
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 712 AGAATTACGGAATAGCTTCTTACAGCCTCCTGCTATAGCTAAGCAACGTTCACGTTCTGA 771
Query 775 CGAAATCTTGGAAGATTCTATTGACGAACCTGCCTCCTACACTCCTCTGTTAGATGGCGG 834
|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 772 TGAAATCTTGGAAGATTCTATTGACCAACCGGCCTCCTACACTCCTCTGTTTGATGGCGG 831
Query 835 CCTAAGCAATATCACTTTGCCCAATGCAACACAGGTCTTTTTAT-TTCTACCTATTCTTC 893
|| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 832 CCAAAGCAATATCACTTCGCCCAATGCAAAACAGGTCTTTTTATGTTCTACCTATTCTTC 891
Query 894 TCTTAAGTTGTTTGTGTACTCATTGTAGTTGAGGTTTTTATACTTGGTTTGTCTATGGTT 953
||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 892 TCTTAAGTTGTTTATGTGCTCATTGTAGTTGAGGTTTT-ATACTTG-TTTGTCTATGTTT 949
Query 954 T-TACCAATTGGGTTTCCAGATGCTTC-TTTTC---GGACCTTTCTTTTGAAACTGTA-T 1007
| | |||||||| ||||||||||||| ||||| |||||| ||||||||||||||| |
Sbjct 950 TCTTCCAATTGGCTTTCCAGATGCTTGGTTTTCTTAGGACCTCTCTTTTGAAACTGTAGT 1009
Query 1008 -G---CAATATAGTGAGAATTGGATTGAACTATCTAGATCACC-CAACCATGCTTTTTAG 1062
| ||| ||| |||||||||||| |||||||||||| || |||| |||||| ||||
Sbjct 1010 TGATGCAAGATAATGAGAATTGGAT-GAACTATCTAGA-CAAAACAACTATGCTTCTTAG 1067
Query 1063 CTCTTTGCCACTCTAGGTTAGGTGAAACTTGTTTCTCACTAACAAACAAAGGCCACATAG 1122
||||||||||||||||||||| || ||| ||||||||| || || |||| | | |
Sbjct 1068 CTCTTTGCCACTCTAGGTTAGATGCAACATGTTTCTCA--AA-AA-CAAA--C-A--T-- 1116
Query 1123 TATTGATATTACATCATAGTATGCTGCTTTTCTTGTCTCAGT-ACTCCTCTAAAACTTAC 1181
|||||||||||||||| | |||||| ||| | |||||||||||||||||
Sbjct 1117 -----------CATCATAGTATGCTGCCTCTCTTGTTTCA-TCACTCCTCTAAAACTTAC 1164
Query 1182 ACAGACATAGCAAG-TGGGTTTTCAACCTTTTGTAGGTGATTAAGCACCATTCAGCTGGA 1240
|||| ||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1165 ACAGCCATAGCAAGGTGG-TTTTCATCCTTTTGTAGGTGATTAAGCATCATTCAGCTGGA 1223
Query 1241 GACATTTACAAAGGATCCCAATCATCTGCTGCAGAAGCCTCTCGAAAGAAGTCTCCTCTA 1300
||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||
Sbjct 1224 GACATTTACAAAGGATCCCCATTGTCTGCTGCAGAAGCCTCTCGGAATAAGTCTCCTCTA 1283
Query 1301 TCCAGATCCTTAGAAGCACTTCATTCTAGTCTCTGTTGATA----GA-A--CA---TCTA 1350
||||||||||| ||||||||| ||||||||||||||||||| || | || ||||
Sbjct 1284 TCCAGATCCTTGGAAGCACTTGATTCTAGTCTCTGTTGATAACTTGATATACAACATCTA 1343
Query 1351 ATGATTGTGGACGT--TTCCAACTCACTTTTGCAGGAAGATAGCTTTTGTCACGAGCAAC 1408
||||||| || ||| ||| |||||||||||||||||||||||||| | ||||||||
Sbjct 1344 ATGATTGGGGCCGTAATTCTG--TCACTTTTGCAGGAAGATAGCTTTTGACTCGAGCAAC 1401
Query 1409 TTCATTCAACAATTCTAAGGCCATTCTTTGTTTTCAATTTGAAGAATCCAGATCCGAGAT 1468
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1402 TTCATTCAACAATTCTAAGGCGATTCTTTGTTTTCAATTTGAAGA-TCCAGATCCTAGAT 1460
Query 1469 TTACATAGTGGATAACAAGCAAGAACAATGCCTTTATCATCATTCATTTTACTCGGAACT 1528
||||||||||||| ||||| |||||| |||||| | ||||| || ||||| ||||
Sbjct 1461 TTACATAGTGGATGACAAGAAAGAACCATGCCT----C-TCATT--TT--ACTCGAAACT 1511
Query 1529 GTATAGAATTGGGGTTATTTGGACTACGAATGTACATTAGCATTCTTTTCTGTACATGAA 1588
||||||| | ||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1512 GTATAGA---G-----ATTGGGACTAGGAATGTACATTAGCATTCTTTTCTGTACATGAA 1563
Query 1589 AAATAGGTGAATCGGAGGGTTAGTAT 1614
|||||||||||| |||||||||||||
Sbjct 1564 AAATAGGTGAATTGGAGGGTTAGTAT 1589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5