BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13420.1 Length=1647 Score E Sequences producing significant alignments: (Bits) Value Ahg478723 jgi|Araly1|478723|fgenesh2_kg.3__1424__AT3G13420.1 1999 0.0 > Ahg478723 jgi|Araly1|478723|fgenesh2_kg.3__1424__AT3G13420.1 Length=1589 Score = 1999 bits (1082), Expect = 0.0 Identities = 1473/1646 (89%), Gaps = 89/1646 (5%) Strand=Plus/Plus Query 1 CTTCTGCAACGCGATCCCGCCAAAGACACTCTTTACTTTCTCCCTCACGAAAATTCTCAA 60 |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| Sbjct 1 CTTCTGCAACGCGATCCCGCCAAAGAAACTC-TTA-----TCCCTCACGAAAATTCTCAA 54 Query 61 ATCGTCGTTCTCTCTTGATTCACCGATTTCGTTCGCCGGAAAATTGCAATTT-AGCATCA 119 ||||||||||||||| | ||||||| ||||||| ||||| |||||||||||| || |||| Sbjct 55 ATCGTCGTTCTCTCTCGCTTCACCGGTTTCGTTAGCCGGGAAATTGCAATTTAAG-ATCA 113 Query 120 GAATCGTCGAGCCATTTTGTATTATGAA-AGTCCATTGAAGTAACAAGTAACGA--G-AG 175 |||||||||||||||||||| | | ||| || ||||| ||||||||||||||| | || Sbjct 114 GAATCGTCGAGCCATTTTGTCTAAGGAAGAG-ACATTGGAGTAACAAGTAACGAGGGCAG 172 Query 176 CT-GCGAGGTTGAGATTTTACGATGCTTTGTGTTTCGTTACGAAATCGAATACATAATTG 234 || | ||||||||||||||||||||||||||||||| ||||||||| |||| || ||||| Sbjct 173 CTAG-GAGGTTGAGATTTTACGATGCTTTGTGTTTCTTTACGAAATAGAATTCACAATTG 231 Query 235 GCTTCGCGACTACGTTAGGCTCCAATCTGTCGTTTTGATTCTTATCTATGCTCAGATAGG 294 ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 232 GCTTCGCGACTACGTCAGGCTCCAATCTGTCGTCGTGATTCTTATCTACGCTCAGATAGG 291 Query 295 GTGCGCGTTGATCGGTTCACTAGGGGCATTGTACAATGGAGTCGTGCTGATAAATTTGGC 354 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 292 GTGCGCGTTGATCGGTTCACTAGGGGCATTGTACAATGGAGTCTTGCTGATAAATTTGGC 351 Query 355 GATTGCGTTATTTGGGTTAGTAGCAATCGAGAGTAATAGCCAAAGTCTTGGCAGAACCTA 414 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 352 GATTGCGTTATTTGGGTTAGTGGCAATCGAGAGTAATAGCCAGAGTCTTGGCAGAACCTA 411 Query 415 TGCGGTTCTTCTTTTCTGCGCCATTCTTCTTGATGTCTCATGGTTCATTCTCTTCTCCAA 474 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 412 TGCGGTTCTTCTTTTCTGCGCCATTCTTCTTGATGTCTCATGGTTCATACTCTTCTCCAA 471 Query 475 AGAGATTTGGAACATTTCATCTGATATGTATCAAGTCTTTTACATCTTCTCTGTGAAACT 534 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 472 CGAGATTTGGAACATTTCTTCTGAGATGTATCAAGTCTTTTACATCTTCTCTGTGAAACT 531 Query 535 CACCCTGGCTATGGAAATTGCTGGGTTCGTTGTGAGGCTATCGTCCTCTCTGTTATGGTT 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 CACCCTGGCTATGGAAATTGCTGGGTTCGTTGTGAGGCTATCGTCCTCTCTGTTATGGTT 591 Query 595 TCAGATCTATAGGCTGGGAGCTTCTATTATAGACTCTCCATTTCCCCGTCAATCAGATTC 654 ||||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||| Sbjct 592 TCAGATCTATAGGCTGGGAGCTTCTATTATAGACTCTTCGTTTCCCCGTCAACCTGATTC 651 Query 655 AGATTTACGGAATAGCTTCTTAGAACCTCCTCTTTTAGCTAGGCAACGTTCACGTGATCC 714 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 AGATTTACGAAATAGCTTCTTAGAACCTCCTCTTTTAGCTAGGCAACGTTCACGTGATCC 711 Query 715 AGAATTACGAAATAGCTTCTTACAGGCTCCTGCTATAGCTAAGCAACGTTCACGTTCTGA 774 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 712 AGAATTACGGAATAGCTTCTTACAGCCTCCTGCTATAGCTAAGCAACGTTCACGTTCTGA 771 Query 775 CGAAATCTTGGAAGATTCTATTGACGAACCTGCCTCCTACACTCCTCTGTTAGATGGCGG 834 |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| Sbjct 772 TGAAATCTTGGAAGATTCTATTGACCAACCGGCCTCCTACACTCCTCTGTTTGATGGCGG 831 Query 835 CCTAAGCAATATCACTTTGCCCAATGCAACACAGGTCTTTTTAT-TTCTACCTATTCTTC 893 || |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 832 CCAAAGCAATATCACTTCGCCCAATGCAAAACAGGTCTTTTTATGTTCTACCTATTCTTC 891 Query 894 TCTTAAGTTGTTTGTGTACTCATTGTAGTTGAGGTTTTTATACTTGGTTTGTCTATGGTT 953 ||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||| || Sbjct 892 TCTTAAGTTGTTTATGTGCTCATTGTAGTTGAGGTTTT-ATACTTG-TTTGTCTATGTTT 949 Query 954 T-TACCAATTGGGTTTCCAGATGCTTC-TTTTC---GGACCTTTCTTTTGAAACTGTA-T 1007 | | |||||||| ||||||||||||| ||||| |||||| ||||||||||||||| | Sbjct 950 TCTTCCAATTGGCTTTCCAGATGCTTGGTTTTCTTAGGACCTCTCTTTTGAAACTGTAGT 1009 Query 1008 -G---CAATATAGTGAGAATTGGATTGAACTATCTAGATCACC-CAACCATGCTTTTTAG 1062 | ||| ||| |||||||||||| |||||||||||| || |||| |||||| |||| Sbjct 1010 TGATGCAAGATAATGAGAATTGGAT-GAACTATCTAGA-CAAAACAACTATGCTTCTTAG 1067 Query 1063 CTCTTTGCCACTCTAGGTTAGGTGAAACTTGTTTCTCACTAACAAACAAAGGCCACATAG 1122 ||||||||||||||||||||| || ||| ||||||||| || || |||| | | | Sbjct 1068 CTCTTTGCCACTCTAGGTTAGATGCAACATGTTTCTCA--AA-AA-CAAA--C-A--T-- 1116 Query 1123 TATTGATATTACATCATAGTATGCTGCTTTTCTTGTCTCAGT-ACTCCTCTAAAACTTAC 1181 |||||||||||||||| | |||||| ||| | ||||||||||||||||| Sbjct 1117 -----------CATCATAGTATGCTGCCTCTCTTGTTTCA-TCACTCCTCTAAAACTTAC 1164 Query 1182 ACAGACATAGCAAG-TGGGTTTTCAACCTTTTGTAGGTGATTAAGCACCATTCAGCTGGA 1240 |||| ||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 1165 ACAGCCATAGCAAGGTGG-TTTTCATCCTTTTGTAGGTGATTAAGCATCATTCAGCTGGA 1223 Query 1241 GACATTTACAAAGGATCCCAATCATCTGCTGCAGAAGCCTCTCGAAAGAAGTCTCCTCTA 1300 ||||||||||||||||||| || |||||||||||||||||||| || |||||||||||| Sbjct 1224 GACATTTACAAAGGATCCCCATTGTCTGCTGCAGAAGCCTCTCGGAATAAGTCTCCTCTA 1283 Query 1301 TCCAGATCCTTAGAAGCACTTCATTCTAGTCTCTGTTGATA----GA-A--CA---TCTA 1350 ||||||||||| ||||||||| ||||||||||||||||||| || | || |||| Sbjct 1284 TCCAGATCCTTGGAAGCACTTGATTCTAGTCTCTGTTGATAACTTGATATACAACATCTA 1343 Query 1351 ATGATTGTGGACGT--TTCCAACTCACTTTTGCAGGAAGATAGCTTTTGTCACGAGCAAC 1408 ||||||| || ||| ||| |||||||||||||||||||||||||| | |||||||| Sbjct 1344 ATGATTGGGGCCGTAATTCTG--TCACTTTTGCAGGAAGATAGCTTTTGACTCGAGCAAC 1401 Query 1409 TTCATTCAACAATTCTAAGGCCATTCTTTGTTTTCAATTTGAAGAATCCAGATCCGAGAT 1468 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| Sbjct 1402 TTCATTCAACAATTCTAAGGCGATTCTTTGTTTTCAATTTGAAGA-TCCAGATCCTAGAT 1460 Query 1469 TTACATAGTGGATAACAAGCAAGAACAATGCCTTTATCATCATTCATTTTACTCGGAACT 1528 ||||||||||||| ||||| |||||| |||||| | ||||| || ||||| |||| Sbjct 1461 TTACATAGTGGATGACAAGAAAGAACCATGCCT----C-TCATT--TT--ACTCGAAACT 1511 Query 1529 GTATAGAATTGGGGTTATTTGGACTACGAATGTACATTAGCATTCTTTTCTGTACATGAA 1588 ||||||| | ||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1512 GTATAGA---G-----ATTGGGACTAGGAATGTACATTAGCATTCTTTTCTGTACATGAA 1563 Query 1589 AAATAGGTGAATCGGAGGGTTAGTAT 1614 |||||||||||| ||||||||||||| Sbjct 1564 AAATAGGTGAATTGGAGGGTTAGTAT 1589 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61744287145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5