BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13430.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478724 jgi|Araly1|478724|fgenesh2_kg.3__1425__AT3G13430.2 1009 0.0
Ahg490530 jgi|Araly1|490530|fgenesh2_kg.6__3664__AT4G00355.1 60.2 3e-08
> Ahg478724 jgi|Araly1|478724|fgenesh2_kg.3__1425__AT3G13430.2
Length=1113
Score = 1009 bits (546), Expect = 0.0
Identities = 606/636 (95%), Gaps = 0/636 (0%)
Strand=Plus/Plus
Query 442 GATGATGGTGATCAGAACAATGATGGAGAAATTGATATAACTCATCAACTTGAAGAGATT 501
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 463 GATGATGGTGATCAGAACAATGATGGAGAAATTGATATTACTCGGCAACTTGAAGAGATT 522
Query 502 AGGAGGATAAGGACTAGACATTCAACTGCTATTGTTAATCTGCTTCAGGGGATTCGAGCT 561
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 523 AGGAGGATAAGGACTAGACATTCAACTGCCATTGTTAATCTGCTTCAAGGGATTCGAGCT 582
Query 562 GGATTATTGATCGAATCCGAGAACAACGAGGATAATCCCGATAATAGCGAGCTTGTCGTC 621
|| ||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||
Sbjct 583 GGGTTATTGATCGAATCCGAGACCAATGATGATAATCCCGATAACAGCGAGCTTGTCGTC 642
Query 622 TTGATCAACTCATTTAACCAAAGGATCAGGGTTCATCAAGATTCTGTAGACACCACTTCT 681
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 643 TTGATCAACTCCTTTAACCAAAGGATCAGGGTTCATCAAGATTCTGTCGACACGGCTTCT 702
Query 682 GTTCCTTCTGGATCTTTGGGTGACTATTTCATTGGACCTGGATTCGAGACGTTGCTTCAG 741
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GTTCCTCCTGGATCTTTGGGTGACTATTTCATTGGACCTGGATTCGAGACGTTGCTTCAG 762
Query 742 CGTTTGGCTGAGAATGATCTGAACAACAGGTATGGGACACCTCCAGCTACAAAAGAAGCG 801
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 763 CGTTTGGCTGAGAATGATCTGAACAACCGGTATGGGACACCTCCAGCTACAAAAGAAGCG 822
Query 802 GTTGAGGCATTGGCGATGGTGAAAATCGAAGATAGTTTGTTGCAGTGTAGTGTGTGTTTG 861
|||||||| ||||| |||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct 823 GTTGAGGCCTTGGCCATGGTGAAAATCAAAGAGAGTTTGTTGCAATGTAGTGTGTGTTTG 882
Query 862 GATGATTTTGAGATTGGAATGGAGGCTAAAGAGATGCCGTGTAAGCATAAGTTTCATAGT 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GATGATTTTGAGATTGGAATGGAGGCTAAAGAGATGCCGTGTAAGCATAAGTTTCATAGT 942
Query 922 GACTGCTTGTTGCCATGGCTTGAGCTTCATAGCTCATGCCCTGTTTGCAGATATCTGCTT 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GACTGCTTGTTGCCATGGCTTGAGCTTCATAGCTCATGCCCTGTTTGCAGATATCTGCTT 1002
Query 982 CCTACAGGAGATGATGATGAGCCAAAGACTGATGCAGAAACATCGAGAAACGATGATAAC 1041
||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1003 CCTACAGCAGATGATGATGAGCCAAAGAAGGATGCAGAAACATTGAGAAACGATGATAAC 1062
Query 1042 AATGAAGATATCAGTAATGCTTCTATGGCTAGTAAT 1077
|||| ||||||||| ||||||||||||| || |||
Sbjct 1063 AATGGCGATATCAGTGATGCTTCTATGGCGAGCAAT 1098
Score = 291 bits (157), Expect = 1e-77
Identities = 236/271 (87%), Gaps = 17/271 (6%)
Strand=Plus/Plus
Query 142 AGAGAGAGAGTTTGAACAAGGAAGGATTGAAC--T----ATGGAAGATGCATCAGAGACT 195
|||||||||||| ||||||||||||||||| | | |||||||||||| ||||||||
Sbjct 190 AGAGAGAGAGTTAGAACAAGGAAGGATTGAGCTATGGAAATGGAAGATGCAACAGAGACT 249
Query 196 AGCTACTGGTGTCACATGTGCTCCCGATCGGTGATTCCATTGATTCAAGACGAAATCATC 255
|| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 250 AGGTACTGGTGTCACATGTGCTCTCGATCGGTGGTTCCATTGATTCAAGACCAAATCATC 309
Query 256 AAATGCAATTTCTGTCAAAGTGGTTTTGTTGAAGAAATGGATAAT-A--AT---GA-T-- 306
|| |||||||||||||||||||| || |||||| ||||||||||| | || || |
Sbjct 310 AATTGCAATTTCTGTCAAAGTGGATTCGTTGAACAAATGGATAATGATGATCAAGATTCG 369
Query 307 GACCATCAGGCTGCTGATTCTCTCTGGACTCCTATCTTGATGGAGATGATGAACAA-CAA 365
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 370 GATCATCAGGCTGCTGATTCTCTCTGGGCTCCTATCTTGATGGAGATGATGAACAATCA- 428
Query 366 TCACGACCAACATTCTACCAATCAGGAAGAC 396
| || | |||||||| || ||||||||||||
Sbjct 429 TGACCAACAACATTCAACGAATCAGGAAGAC 459
> Ahg490530 jgi|Araly1|490530|fgenesh2_kg.6__3664__AT4G00355.1
Length=1231
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 412 GAAGATGAAGACGAAGACGAAGATGATGGTGATGA 446
||||| |||||||||||||||||||||||||||||
Sbjct 76 GAAGAAGAAGACGAAGACGAAGATGATGGTGATGA 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5