BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13435.1

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318121 jgi|Araly1|318121|fgenesh1_pm.C_scaffold_3001137           344    2e-94


> Ahg318121 jgi|Araly1|318121|fgenesh1_pm.C_scaffold_3001137
Length=216

 Score =  344 bits (186),  Expect = 2e-94
 Identities = 206/216 (95%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  17   ATGAATTGGAAGTTGGTTTTGCTAATTGGTTGGATTCTCCTCTCGTCTATTGCATCAAAC  76
            ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAACTGGAAGTTGGTTTTGCTATTTGGTTGGATTCTCCTCTCGTCTATTGCATCAAAC  60

Query  77   CCAGCTTTGGCTAAAGTTACTTATCCAACTCGCACAACAAGAAAATGGCTTGGAAATATA  136
            ||| ||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||
Sbjct  61   CCAACTTTGGCTAAAGTAACATATCCACCTCGCACGACAAGAAAAGGGCTTGGAAATATA  120

Query  137  CACATCAGCAAAGGAATGAAGATTGGCTTTACAGGCAGTTTTTCTAGACCTGCTCCTCAC  196
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CACATCAACAAAGGAATGAAGATTGGCTTTACAGGCAGTTTTTCTAGACCTGCTCCTCAC  180

Query  197  GGAGGCGGTCCACCGAAGATCATTTCTAAGTTATGA  232
            |||||||||||||||||||||||||||||||| |||
Sbjct  181  GGAGGCGGTCCACCGAAGATCATTTCTAAGTTGTGA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667655548


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5