BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13435.1 Length=356 Score E Sequences producing significant alignments: (Bits) Value Ahg318121 jgi|Araly1|318121|fgenesh1_pm.C_scaffold_3001137 344 2e-94 > Ahg318121 jgi|Araly1|318121|fgenesh1_pm.C_scaffold_3001137 Length=216 Score = 344 bits (186), Expect = 2e-94 Identities = 206/216 (95%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 17 ATGAATTGGAAGTTGGTTTTGCTAATTGGTTGGATTCTCCTCTCGTCTATTGCATCAAAC 76 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAACTGGAAGTTGGTTTTGCTATTTGGTTGGATTCTCCTCTCGTCTATTGCATCAAAC 60 Query 77 CCAGCTTTGGCTAAAGTTACTTATCCAACTCGCACAACAAGAAAATGGCTTGGAAATATA 136 ||| ||||||||||||| || |||||| ||||||| ||||||||| |||||||||||||| Sbjct 61 CCAACTTTGGCTAAAGTAACATATCCACCTCGCACGACAAGAAAAGGGCTTGGAAATATA 120 Query 137 CACATCAGCAAAGGAATGAAGATTGGCTTTACAGGCAGTTTTTCTAGACCTGCTCCTCAC 196 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CACATCAACAAAGGAATGAAGATTGGCTTTACAGGCAGTTTTTCTAGACCTGCTCCTCAC 180 Query 197 GGAGGCGGTCCACCGAAGATCATTTCTAAGTTATGA 232 |||||||||||||||||||||||||||||||| ||| Sbjct 181 GGAGGCGGTCCACCGAAGATCATTTCTAAGTTGTGA 216 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12667655548 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5