BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13440.1
Length=2047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318122 jgi|Araly1|318122|fgenesh1_pm.C_scaffold_3001138 1275 0.0
> Ahg318122 jgi|Araly1|318122|fgenesh1_pm.C_scaffold_3001138
Length=837
Score = 1275 bits (690), Expect = 0.0
Identities = 790/839 (94%), Gaps = 4/839 (0%)
Strand=Plus/Plus
Query 983 ATGGCTGACCAAGGATTAGAAGAGAGTAATCCAATGGACCTTAGCAAACATCCTTCAGGG 1042
|||||||| |||||||| |||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1 ATGGCTGATCAAGGATTGGAAGGGAGTAATCCTGTGGACCTTAGCAAGCATCCTTCAGGG 60
Query 1043 ATTGTTCCTACTCCTCATAGTCAAGTCATTTACAAGATGCCACCAAGAATTGCTGCTATC 1102
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 61 ATTGTTCCTACTCCTCATAGTCCAGTCATTTACAAGATGCCACCAAGAATTGCTGCCATC 120
Query 1103 CGTCTTGTAAGCTCGCATCGTGAGGTCTATGAACCATGTGATGATTCATTTGCGCTAGTT 1162
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 121 CGTCTTGTAAGCTCTCATCGTGAGGTCTACGAACCATGTGATGATTCATTTGCACTAGTT 180
Query 1163 GATGCATTACTCGCTGATCGCACCAACCTTATAGAGCACAACCCTAAGATTTGTATGGAG 1222
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GATGCATTACTCGCTGATCGCACCAACCTGATAGAGCACAACCCTAAGATTTGTATGGAG 240
Query 1223 ATTGGATGCGGAAGCGGATATGTCATAACTTCACTTATACTTCTTCTTCAAAACGAAGTT 1282
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 ATTGGATGCGGAAGCGGGTATGTCATAACTTCACTTATACTTCTTCTTAAAAACGAAGTT 300
Query 1283 CCTGGTGTTCATTATCTCGCCATTGACACTAACCCGATAGCTACAAGAGTGACAAAAGAA 1342
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 301 CCTGGTGTTCATTATCTCGCCACTGACACAAACCCGATAGCTACAAGAGTGACAAAAGAA 360
Query 1343 ACTCTAGAAGCACATGGAGTTAATGCTGATGTTATCTGCGCAGATTTAGCTACTGGT-CT 1401
|||||| ||||||||||||| |||||||||| |||||||||||| ||||| | ||| ||
Sbjct 361 ACTCTACAAGCACATGGAGTCGATGCTGATGTCATCTGCGCAGATATAGCTTC-GGTTCT 419
Query 1402 AGAGAAGAGACTTGCTGGCTCAGTCGACGTGATTGTGGTGAATCCGCCTTATGTGCCAAC 1461
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 AGAGAAGAGACTTGCTGGCTCAGTCGACGTGATTGTGGTGAATCCACCTTATGTGCCAAC 479
Query 1462 ACCTGAATATGAAGTTGGAATGGAAGGTATTGCCTCTGCTTGGGCAGGAGGGGAAAATGG 1521
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ACCGGAATATGAAGTTGGAATGGAAGGTATTGCCTCTGCTTGGGCTGGAGGGGAAAATGG 539
Query 1522 CCGGACAGTCATCGATAAAATCTTGCCTGTGGTTGATCTTTTGCTATCAGAGAAAGGATG 1581
|||||| || ||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 540 CCGGACTGTTATCGATAAAATCTTGCCTGTGGTTGATCTTTTGCTTTCGGAGAAAGGTTG 599
Query 1582 GTTCTACTTAGTGACATTAACTTCAAATTTCCCAGCAGAGATTTGTCTGATGATGAGAAA 1641
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GTTCTACTTAGTGACATTAACTTCGAATTTCCCAGCAGAGATTTGTCTGATGATGAGAAA 659
Query 1642 GAAAGGTTATGCTTCGAGAATCGTAGTTCAGAGATCAACAGAAGAGGAGAATCTCGTTAT 1701
||| ||||| || || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 660 GAAGGGTTACGCGTCAAGAATTGTGGTTCAGAGATCAACAGAAGAGGAGAATCTCGTTAT 719
Query 1702 CCTAAAGTTCTGGAGAGACAAGGATGAGGAGAGCCAGGACAAAGAGACATCATCATCATC 1761
||| |||||||||||||||||||||||||||||| |||| || ||||||||||| |||||
Sbjct 720 CCTTAAGTTCTGGAGAGACAAGGATGAGGAGAGCAAGGAGAAGGAGACATCATCGTCATC 779
Query 1762 GTTTGTTTCGCAGTTTTCGAAATC-CTTATCTTCGCTTATGGAGAAACAATGGCGCTGA 1819
|||||||||||||||||||||||| || ||| || |||||||||||||||||||| |||
Sbjct 780 GTTTGTTTCGCAGTTTTCGAAATCTCT-ATCATCACTTATGGAGAAACAATGGCGTTGA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76980385145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5