BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13445.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478727 jgi|Araly1|478727|fgenesh2_kg.3__1428__AT3G13445.1 1725 0.0
Ahg474610 jgi|Araly1|474610|fgenesh2_kg.1__4564__AT1G55520.2 604 4e-172
Ahg318122 jgi|Araly1|318122|fgenesh1_pm.C_scaffold_3001138 115 7e-25
> Ahg478727 jgi|Araly1|478727|fgenesh2_kg.3__1428__AT3G13445.1
Length=1217
Score = 1725 bits (934), Expect = 0.0
Identities = 1145/1240 (92%), Gaps = 41/1240 (3%)
Strand=Plus/Plus
Query 1 CCCAAATCCGAAACGCAAGTCGATGACCTCCTCTCTCTCACAGATCTAAAAACCAGAAGC 60
||||||||||| |||||||||| |||||| | || ||||||||||||||||||||||| |
Sbjct 1 CCCAAATCCGAGACGCAAGTCGGTGACCT-C-CT-TCTCACAGATCTAAAAACCAGAAAC 57
Query 61 GAGAGAAACAAATTCACTCTC-CCCTTATATAAGCACCGATTTATAAATCTTTTTCCCTC 119
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAGAG-AACAAATTCACTCTCTCCCTTATATAAGCACCGATTTATAAATCTTTTTCCCTC 116
Query 120 TTCGATTCTCAATTCTTTGTATAAAAGGCTTCTCCTTTTCTCAATTCTTCGGCTTCCTTT 179
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 117 TCCGATTCTCAATTCTTTGTATAAAAAGCTTCTCCTTTTCTCAATTCTTCGGCTTCCTTT 176
Query 180 CGCCCAAACTCTTCCCTCGAATCTTTCCTTCTCGTCTTAAAGCTACGAAACCCTAGATTT 239
|| ||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 177 CG-CCAAATTCTTCCCGCGAATCTTCCCTAATCGTCTTAAAGCTACGAAACCCTAGATTT 235
Query 240 CGGATTTCTTCGCTATCCAAAGAAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCAG 299
|||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 236 CGGATTTCCTCGCTATCCAAAGAATAATGGCTGATCAAGGATTGGAAGGGAGTACTCCAG 295
Query 300 TTGATCTTAGCAAGCATCCTTCAGGGATTGTTCCTACTCTTCAAAACATTGTCTCCACGG 359
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TGGACCTTAGCAAGCATCCTTCAGGGATTGTTCCTACTCTTCAAAACATTGTCTCCACGG 355
Query 360 TGAACTTAGACTGCAAGCTAGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCTGAAT 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGAACCTAGACTGCAAGCTAGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCTGAAT 415
Query 420 ATAATCCCAAGCGTTTTGCTGCGGTGATAATGAGGATCAGAGAACCGAAGACTACAGCAT 479
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 416 ATAATCCCAAGCGTTTTGCTGCTGTTATTATGAGGATCAGAGAACCGAAGACTACAGCAT 475
Query 480 TAATATTCGCCTCAGGGAAAATGGTCTGTACTGGAGCTAAGAGCGAGGACTTTTCGAAGA 539
| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 476 TGATATTCGCCTCAGGGAAAATGGTCTGTACTGGAGCGAAGAGTGAGTACTTTTCGAAGA 535
Query 540 TGGCTGCTAGAAAGTATGCTAGGATTGTGCAGAAATTGGGATTCCCTGCAAAATTCAAGG 599
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 536 TGGCTGCCCGAAAGTATGCTAGGATTGTGCAGAAATTGGGATTCTCTGCAAAATTCAAGG 595
Query 600 ATTTCAAGATTCAGAATATTGTAGGTTCTTGTGATGTCAAATTCCCTATAAGACTTGAAG 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATTTCAAGATTCAGAATATCGTAGGTTCTTGTGATGTCAAATTCCCTATAAGACTTGAAG 655
Query 660 GTCTTGCTTACTCTCACGCTGCTTTCTCAAGTTATGAGCCCGAGCTCTTCCCAGGGCTGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTCTTGCTTACTCTCACGCTGCTTTCTCAAGTTATGAGCCCGAGCTCTTCCCAGGGCTGA 715
Query 720 TTTATAGGATGAAAGTCCCAAAAATCGTCCTTCTAATCTTTGTCTCTGGGAAGATCGTAA 779
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 716 TTTATAGGATGAAAGTGCCTAAAATCGTCCTTCTAATCTTTGTCTCTGGGAAGATCGTTA 775
Query 780 TAACAGGAGCCAAGATGAGAGATGAGACCTACAAAGCCTTTGAGAATATATACCCCGTGC 839
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 776 TAACAGGAGCCAAGATGAGAGAGGAGACCTACAGAGCCTTTGAGAATATATACCCCGTGC 835
Query 840 TCTCGGAATTCAGAAAGATACAGCAATAGG-TCACGGATTTGTTCCCTGCAAAACTAGTT 898
|| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 836 TCACGGAATTCAGAAAGATACAGCAATAGGGTCAAGGATTTGTTCCCTGCAGAACTAGTT 895
Query 899 GTGCGGTCTTAGCCCCTTGGAGTTGCTAAAGCTTGCTGAGAATTTTGCCCTTGAACAAAG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 GTGCGGTCTTAGCCCCTTGGAGTTGCTAAAGCTTGCTGAGAATTTTGCCCTTGAACAAGG 955
Query 959 GCTTTCACAGTAGCTAGACTCTCACCTTGTGTTTTGGTTCATAATATAACATTGTATATA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GCTTTCACAGTAGCTAGACTCTCACCTTGTGTTTTGGTTCATAATATAACATTGTATATA 1015
Query 1019 CACAATGGAGATTCTAAAGACAATTCTTCGGTTCTAttttttttctttttctttCCAAGA 1078
|||||||||||||| |||||||||||||||||||| |||| | ||||| | | ||||
Sbjct 1016 CACAATGGAGATTCCAAAGACAATTCTTCGGTTCT-TTTTCT--CTTTT-C---C-AAGA 1067
Query 1079 TATGTCTTACATGTATG-TTGCTGTAGTGTCCTCA---CAT--TTC-CACT--TATGTTA 1129
||||||||||||||| | || |||||| |||| | ||| || || | ||| |||
Sbjct 1068 TATGTCTTACATGTACGATTT-TGTAGTATCCTTAGAGCATGATTAACAATAGTATCTTA 1126
Query 1130 CAAGTAGAACCTTA-ACTCAGTGTGTAGCCCTAAAGTCTTGTTTATCATAGA---G--A- 1182
|| ||| | ||| | | | ||| || ||||||||||||| |||||| | |
Sbjct 1127 AAAATAGTTC-TTAGAAT-A-TGT-TA-----AAAGTCTTGTTTAGCATAGATTAGCCAA 1177
Query 1183 TTGGCCAAGATTGTGAACAAAGATGGAGAGTTTCAAGATC 1222
|| ||||||||| |||||||||||||||||||||||||||
Sbjct 1178 TTAGCCAAGATTATGAACAAAGATGGAGAGTTTCAAGATC 1217
> Ahg474610 jgi|Araly1|474610|fgenesh2_kg.1__4564__AT1G55520.2
Length=1198
Score = 604 bits (327), Expect = 4e-172
Identities = 553/660 (84%), Gaps = 24/660 (4%)
Strand=Plus/Plus
Query 223 TACGAAACCCTAGATTTCG-GATTTC---TTCGCT-A-T--CCAAAGAAGAATGACTGAT 274
||||||||||||||||||| ||| | || ||| | | | |||| |||||| |||||
Sbjct 203 TACGAAACCCTAGATTTCGAAATTCCGGATT-GCTAACTAGCGAAAG-AGAATGGCTGAT 260
Query 275 CAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGC-AAGCATCCTTCAGGGATTGTTCC 333
|||||| |||||||||| | |||||||| |||| | |||||||||||||||||||||||
Sbjct 261 CAAGGAATGGAAGGGAGCCAGCCAGTTGACCTTA-CTAAGCATCCTTCAGGGATTGTTCC 319
Query 334 TACTCTTCAAAACATTGTCTCCACGGTGAACTTAGACTGCAAGCTAGATCTTAAAGCCAT 393
||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 320 AACTCTTCAAAATATTGTCTCAACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCAT 379
Query 394 AGCTTTGCAGGCTCGGAATGCTGAATATAATCCCAAGCGTTTTGCTGCGGTGATAATGAG 453
|||||||||||||||||||||||||||||| ||||||||||| ||||| || || |||||
Sbjct 380 AGCTTTGCAGGCTCGGAATGCTGAATATAACCCCAAGCGTTTCGCTGCTGTAATCATGAG 439
Query 454 GATCAGAGAACCGAAGACTACAGCATTAATATTCGCCTCAGGGAAAATGGTCTGTACTGG 513
||||||||| || ||||| ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 440 GATCAGAGAGCCAAAGACAACAGCTTTAATTTTTGCTTCTGGGAAAATGGTGTGTACTGG 499
Query 514 AGCTAAGAGCGAGGA-CTTTTCGAAGA-TGGCTGCTAGAAAGTATGCTAGGATTGTGCAG 571
|||||| || || | |||| | || | | ||||| |||||||||||| ||||||| ||
Sbjct 500 AGCTAAAAGTGAACATCTTT-CAAA-ACTTGCTGCAAGAAAGTATGCTCGGATTGTTCA- 556
Query 572 AAA--TTGGGATTCCCTGCAAAATTCAAGGATTTCAAGATTCAGAATATTGTAGGTTCTT 629
||| |||| |||| |||||| ||||||||||||||||||||||| |||||||| || |
Sbjct 557 AAAGCTTGGCTTTCC-TGCAAAGTTCAAGGATTTCAAGATTCAGAACATTGTAGGCTCAT 615
Query 630 GTGATGTCAAATTCCCTATAAGACTTGAAGGTCTTGCTTACTCTCAC-GCTGCTTTCTCA 688
|||||||||||||||| || || |||||||||||||| |||||||| | ||||||||||
Sbjct 616 GTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTCTCATAG-TGCTTTCTCA 674
Query 689 AGTTATGAGCCCGAGCTCTTCCCAGGGCTGATTTATAGGATGAAAGTCCCAAAAATCGTC 748
||||| ||||| ||||| || ||||| |||| ||||| |||||| | ||||| || ||
Sbjct 675 AGTTACGAGCCTGAGCTATTTCCAGGATTGATATATAGAATGAAACTGCCAAAGATTGTA 734
Query 749 CTTCTAATCTTTGTCTCTGGGAAGATCGTAATAACAGGAGCCAAGATGAGAGATGAGACC 808
|| || || ||||| || || ||||| || ||||| ||||||||||||||||| |||||
Sbjct 735 CTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAAGATGAGAGAAGAGACT 794
Query 809 TACAAAGCCTTTGAGAATATATACCCCGTGCTCT-CGGAATTCAGAAAGATACAGCAATA 867
|| | || ||||||||||| ||||| || || | | |||||||| ||| | ||||||||
Sbjct 795 TATACCGCATTTGAGAATATCTACCCAGTTCT-TACAGAATTCAGGAAGGTCCAGCAATA 853
> Ahg318122 jgi|Araly1|318122|fgenesh1_pm.C_scaffold_3001138
Length=837
Score = 115 bits (62), Expect = 7e-25
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 266 ATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAAGCATCCTTCAGGG 325
||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1 ATGGCTGATCAAGGATTGGAAGGGAGTAATCCTGTGGACCTTAGCAAGCATCCTTCAGGG 60
Query 326 ATTGTTCCTACTCTTCA 342
||||||||||||| |||
Sbjct 61 ATTGTTCCTACTCCTCA 77
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5