BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13450.1
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478729 jgi|Araly1|478729|fgenesh2_kg.3__1430__AT3G13450.1 1849 0.0
Ahg924060 jgi|Araly1|924060|scaffold_105341.1 1068 0.0
> Ahg478729 jgi|Araly1|478729|fgenesh2_kg.3__1430__AT3G13450.1
Length=1198
Score = 1849 bits (1001), Expect = 0.0
Identities = 1114/1167 (95%), Gaps = 14/1167 (1%)
Strand=Plus/Plus
Query 147 GGCAGCTCTTGTACGCAGATTCTGCCGGGGATCATCTTTTCCGGTCTCTGGTCATGGATA 206
||||||||||||||||||||| |||||| |||| | | ||||||||||||||| ||||||
Sbjct 3 GGCAGCTCTTGTACGCAGATTGTGCCGGCGATCGTATATTCCGGTCTCTGGTCCTGGATA 62
Query 207 TAGGATGCTATCGACGGTTGAAAATGTATCTGAAAGTGGTAAATCGATGAATCTATACTC 266
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||
Sbjct 63 TAGGATGCTATCGACGATTGAAAATGTATCTGAAAATGGTAAATCGATGAATCTGTACTC 122
Query 267 TGCTATTAATCAAGCTCTTCACATCGCTTTAGAGACCGATCCTCGGTCTTATGTTTTTGG 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 123 TGCTATTAATCAAGCTCTTCACATCGCTTTAGAGACCGATCCTCGGTCTTATGTGTTTGG 182
Query 327 GGAAGATGTTGGATTTGGTGGTGTCTTCCGATGTACAACAGGATTAGCTGAACGTTTTGG 386
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 183 GGAAGATGTTGGTTTTGGTGGTGTGTTCCGATGTACAACCGGATTAGCTGAACGTTTTGG 242
Query 387 GAAATCTCGAGTTTTCAACACTCCTCTCTGCGAGCAAGGCATTGTTGGCTTTGGCATTGG 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GAAATCTCGAGTTTTCAACACTCCTCTCTGCGAGCAAGGCATTGTTGGCTTTGGCATTGG 302
Query 447 TTTAGCTGCAATGGGAAATCGAGTTATTGCGGAAATTCAGTTTGCGGATTATATTTTCCC 506
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 303 TTTAGCTGCTATGGGAAATCGAGTTATTGCGGAAATTCAGTTTGCGGATTATATCTTCCC 362
Query 507 GGCTTTTGATCAGATTGTTAATGAGGCTGCAAAGTTCAGATACCGAAGTGGAAACCAGTT 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TGCTTTTGATCAGATTGTTAATGAGGCTGCAAAGTTCAGATACCGAAGTGGAAACCAGTT 422
Query 567 TAACTGTGGAGGACTCACTATTAGGGCACCGTACGGAGCAGTTGGTCACGGTGGACATTA 626
||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 423 TAACTGTGGAGGACTTACAATTAGGGCACCGTATGGAGCCGTTGGTCACGGTGGACATTA 482
Query 627 CCACTCGCAGTCCCCTGAAGCTTTCTTTTGTCATGTCCCTGGTATCAAAGTTGTTATTCC 686
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 483 CCACTCACAGTCCCCTGAAGCTTTCTTCTGTCATGTCCCTGGTATCAAAGTTGTTATTCC 542
Query 687 TCGAAGTCCACGGGAAGCTAAGGGATTATTATTGTCATCCATCCGTGATCCGAATCCCGT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TCGAAGTCCACGGGAAGCTAAGGGATTATTATTGTCATCCATCCGTGATCCGAATCCCGT 602
Query 747 TGTCTTTTTCGAACCAAAGTGGCTATATCGTCAAGCGGTAGAGGATGTCCCTGAAGATGA 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 TGTCTTTTTCGAACCAAAGTGGCTATATCGTCAAGCGGTAGAGGATGTCCCTGAGGATGA 662
Query 807 CTATATGATACCTTTATCTGAGGCAGAGGTTATGCGAGAAGGTTCCGACATAACTCTTGT 866
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 663 CTATATGATACCTTTATCTGAGGCAGAGGTTATACGAGAAGGTTCTGACATAACACTTGT 722
Query 867 TGGATGGGGAGCACAGCTCACTATCATGGAACAAGCATGTCTTGACGCAGAAAACGAAGG 926
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 723 TGGATGGGGAGCACAGCTCACTATCATGGAACAAGCATGTCTTGATGCAGAAAACGAAGG 782
Query 927 AATATCGTGTGAATTGATAGATCTCAAGACTCTGATCCCTTGGGATAAGGAAATCGTTGA 986
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CATATCGTGTGAATTGATAGATCTCAAGACTCTGATCCCTTGGGATAAGGAAATCGTTGA 842
Query 987 GACCTCAGTGAGAAAGACTGGCAGACTTCTTATTAGCCATGAAGCTCCTGTTACAGGAGG 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GACCTCAGTGAGAAAGACTGGCAGACTTCTTATTAGCCATGAAGCTCCTGTTACAGGAGG 902
Query 1047 CTTTGGGGCCGAGATCGCTGCAACTATAGTTGAGCGTTGCTTCTTGAGGTTAGAAGCACC 1106
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 903 CTTTGGGGCAGAGATCGCTGCAACTATAGTTGAGCGTTGCTTCTTAAGGTTAGAAGCACC 962
Query 1107 TGTAAGCAGAGTTTGTGGCCTGGACACTCCTTTCCCTCTAGTGTTCGAACCTTTCTACAT 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGTAAGCAGAGTTTGTGGCCTGGACACTCCTTTCCCTCTAGTGTTCGAACCTTTCTACAT 1022
Query 1167 GCCAACCAAGAACAAG--A--T---AT-T-GGATGCAATCAGATCCACTGTGAATTACTA 1217
|||||||||||||||| | | || | ||||||||||| ||| ||||||||||||||
Sbjct 1023 GCCAACCAAGAACAAGGCAAGTTTTATATTGGATGCAATCAAATCAACTGTGAATTACTA 1082
Query 1218 GCCCATCTTAGCATTGTACACAT-----GATTCTCTGTCTCCTATCTTCGAAATAATTAT 1272
|||| |||||||||||||||||| ||||||| ||||||||||||||||||| | ||
Sbjct 1083 GCCCTTCTTAGCATTGTACACATTCTCTGATTCTCAGTCTCCTATCTTCGAAATAGTGAT 1142
Query 1273 TGATGCTGGTGGTTCAGACATGTAATG 1299
||||| | |||||||| ||||||||||
Sbjct 1143 TGATGTTAGTGGTTCATACATGTAATG 1169
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1327 TAATCTATGATCTTGAAACTCTCCATCTTTGTTC 1360
|||| |||||||||||||||||||||||||||||
Sbjct 1165 TAATGTATGATCTTGAAACTCTCCATCTTTGTTC 1198
> Ahg924060 jgi|Araly1|924060|scaffold_105341.1
Length=1100
Score = 1068 bits (578), Expect = 0.0
Identities = 853/988 (86%), Gaps = 10/988 (1%)
Strand=Plus/Plus
Query 238 GAAAGTGGTAAATCGA-TGAATCTATACTCTGCTATTAATCAAGCTCTTCACATCGCTTT 296
|||| ||| ||| | | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 100 GAAACTGGGAAA-CCATTGAATCTATACTCTGCTATTAATCAAGCGCTTCACATCGCTTT 158
Query 297 AGAGACCGATCCTCGGTCTTATGTTTTTGGGGAAGATGTTGGATTTGGTGGTGTCTTCCG 356
|| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 159 GGATACCGATCCTCGGTCTTATGTGTTTGGGGAAGATGTTGGCTTTGGTGGAGTCTTTCG 218
Query 357 ATGTACAACAGGATTAGCTGAACGTTTTGGGAAAT-CTCGAGTTTTCAACACTCCTCTCT 415
|| ||||| || ||||||||||| || |||||| | || || ||||| |||||||| |
Sbjct 219 CTGCACAACTGGTTTAGCTGAACGATTCGGGAAAAAC-CGCGTCTTCAATACTCCTCTTT 277
Query 416 GCGAGCAAGGCATTGTTGGCTTTGGCATTGGTTTAGCTGCAATGGGAAATCGAGTTATTG 475
| ||||| ||||||||||| |||||||||||| |||| |||||||||||||||| ||||
Sbjct 278 GTGAGCAGGGCATTGTTGGATTTGGCATTGGTCTAGCAGCAATGGGAAATCGAGCAATTG 337
Query 476 CGGAAATTCAGTTTGCGGATTATATTT-TCCCGGCTTTTGATCAGATTGTTAATGAGGCT 534
||| |||||||||||||||||||| | ||| | |||||||||||||||||||||| ||
Sbjct 338 TGGAGATTCAGTTTGCGGATTATATATATCCTG-CTTTTGATCAGATTGTTAATGAAGCG 396
Query 535 GCAAAGTTCAGATACCGAAGTGGAAACCAGTTTAACTGTGGAGGACTCACTATTAGGGCA 594
||||| ||||||||||||||||| ||||| || |||||||||||||| || || || |||
Sbjct 397 GCAAAATTCAGATACCGAAGTGGTAACCAATTCAACTGTGGAGGACTTACGATAAGAGCA 456
Query 595 CCGTACGGAGCAGTTGGTCACGGTGGACATTACCACTCGCAGTCCCCTGAAGCTTTCTTT 654
|| || |||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 457 CCATATGGAGCAGTTGGTCATGGTGGACATTACCATTCACAATCCCCTGAAGCTTTCTTT 516
Query 655 TGTCATGTCCCTGGTATCAAAGTTGTTATTCCTCGAAGTCCACGGGAAGCTAAGGGATTA 714
|| ||||| |||||||| || |||||||| |||||||||||||| ||||| |||||| |
Sbjct 517 TGCCATGTTCCTGGTATTAAGGTTGTTATCCCTCGAAGTCCACGAGAAGCAAAGGGACTG 576
Query 715 TTATTGTCATCCATCCGTGATCCGAATCCCGTTGTCTTTTTCGAACCAAAGTGGCTATAT 774
|| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 577 TTGTTGTCATGTATCCGTGATCCAAATCCCGTTGTCTTCTTCGAACCAAAGTGGCTGTAT 636
Query 775 CGTCAAGCGGTAGAGGATGTCCCTGAAG-ATGACTATATGATACCTTTATCTGAGGCAGA 833
|||||||| ||||| || |||||||| | |||||||||||||||||||||| || || ||
Sbjct 637 CGTCAAGCAGTAGAAGAAGTCCCTGA-GCATGACTATATGATACCTTTATCAGAAGCCGA 695
Query 834 GGTTATGCGAGAAGGTTCCGACATAACTCTTGTTGGATGGGGAGCACAGCTCACTATCAT 893
|||||| ||||||| |||||||| ||||||||||||||||| ||||| || || ||
Sbjct 696 GGTTATAAGAGAAGGCAATGACATAACCCTTGTTGGATGGGGAGCTCAGCTTACCATTAT 755
Query 894 GGAACAAGCATGTCTTGACGCAGAAAACGAAGGAATATCGTGTGAATTGATAGATCTCAA 953
||||||||| ||||| ||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 756 GGAACAAGCTTGTCTGGACGCAGAAAAGGAAGGAATATCATGTGAACTGATAGATCTCAA 815
Query 954 GACTCTGATCCCTTGGGATAAGGAAATCGTTGAGACCTCAGTGAGAAAGACTGGCAGACT 1013
|||| || | ||||||||||| |||| ||| ||| |||| || | ||| ||||| |||||
Sbjct 816 GACTTTGCTTCCTTGGGATAAAGAAACCGTCGAGGCCTCGGTTAAAAAAACTGGAAGACT 875
Query 1014 TCTTATTAGCCATGAAGCTCCTGTTACAGGAGGCTTTGGGGCCGAGATCGCTGCAACTAT 1073
|||||| ||||||||||||||||| |||||||| ||||| || |||||| ||||||| ||
Sbjct 876 TCTTATAAGCCATGAAGCTCCTGTAACAGGAGGTTTTGGAGCAGAGATCTCTGCAACAAT 935
Query 1074 AGTTGAGCGTTGCTTCTTGAGGTTAGAAGCACCTGTAAGCAGAGTTTGTGGCCTGGACAC 1133
| || |||||||| || | ||||||||| || ||||||||||||||||| ||||| ||
Sbjct 936 CCTCGAACGTTGCTTTTTAAAGTTAGAAGCTCCAGTAAGCAGAGTTTGTGGACTGGATAC 995
Query 1134 TCC-TTTCCCTCTAGTGTTCGAACCTTTCTACATGCCAACCAAGAACAAGATATTGGATG 1192
||| ||||| ||| ||||| || || ||||||||||| |||| ||||||||||||||| |
Sbjct 996 TCCATTTCC-TCTTGTGTTTGAGCCATTCTACATGCCCACCAGGAACAAGATATTGGACG 1054
Query 1193 CAATCAGATCCACTGTGAATTACTAGCC 1220
| |||| ||| |||||||||||||||||
Sbjct 1055 CGATCAAATCGACTGTGAATTACTAGCC 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5