BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13460.1
Length=2869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478733 jgi|Araly1|478733|fgenesh2_kg.3__1434__AT3G13460.1 4141 0.0
Ahg337630 jgi|Araly1|337630|fgenesh1_pg.C_scaffold_1004195 1112 0.0
> Ahg478733 jgi|Araly1|478733|fgenesh2_kg.3__1434__AT3G13460.1
Length=2912
Score = 4141 bits (2242), Expect = 0.0
Identities = 2715/2930 (93%), Gaps = 86/2930 (3%)
Strand=Plus/Plus
Query 7 AGGTGAGGTGGTTGATTAGTGGATCTATTTGAATCAGAGGGAGAGGTAGAGAGACAAAAC 66
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AGGTGAGGTGGTTGATTCGTGGATCTATTTGAATCAGAGGGAGAGGCAGAGAGACAAAAC 60
Query 67 CCtttttttCCTCTTCCCCGAAGCAAAA--C--CCTTCTCCTTCTTGGCGGCTGCGGCCA 122
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 61 CCTTTTTTTCCTCTTCCCCGAAGCAAAACCCTTCCTTCTCCTTCTTGGCGGCTGCGGCCA 120
Query 123 tttttttcttctttc-tc-tcttctattctatctcttAAACCCTAGATTTGATCTGGGTT 180
|||| |||||| ||| || || ||| ||||||||||||||||||||||| ||||||||||
Sbjct 121 TTTTCTTCTTC-TTCTTCTTC-TCTCTTCTATCTCTTAAACCCTAGATTCGATCTGGGTT 178
Query 181 TTTCCTGATTCCATTTAGGGtttctctatcttc----tttttt--ttcttcttct-tct- 232
|||||||||||| |||||||||||||||||||| |||||| |||||||||| |||
Sbjct 179 TTTCCTGATTCCGTTTAGGGTTTCTCTATCTTCTTTTTTTTTTACTTCTTCTTCTCTCTA 238
Query 233 tctttctctttGGTCGCATCCCCTTTTATCCGAGAAGGATCTATCCAAATCTTTGTTTGT 292
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 TCTTTCTTTTTGGTCGCATCCCCTTTTATCCGAGAAGGATCTATCC-AATCTTTGTTTGT 297
Query 293 CGAATCTCCTCTCATGGCTACCGTTGCTCCTCCTGCTGATCAAGCTACAGATCTGTTGCA 352
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 CGAATCTCGTCTCATGGCTACCGTTGCTCCTCCTGCTGATCAAGCTGCAGATCTGTTGCA 357
Query 353 GAAACTATCCTTGGACTCGCCAGCAAAAGCTTCAGAGATCCCTGAGCCTAACAAGAAGAC 412
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 358 GAAACTATCCTTGGACTCGCAATCAAAAGCTTCAGAGATCCCTGAGCCTAACAAGAAGAC 417
Query 413 TGCCGTCTACCAGTATGGAGGCGTTGATGTTCATGGTCAAGTTCCTTCTTATGATCGATC 472
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 TGCCGTCTATCAATATGGAGGCGTGGATGTTCATGGTCAAGTTCCTTCTTATGATCGATC 477
Query 473 TTTGACACCAATGCTTCCCAGTGATGCTGCTGACCCTTCAGTTTGCTATGTTCCTAATCC 532
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 478 TTTGACACCAATGCTTCCCAGTGATGCCGCTGACCCTTCAGTTTGCTATGTTCCCACTCC 537
Query 533 TTACAATCCCTACCAGTATTACAATGTATATGGGAGTGGTCAAGAGTGGACTGACTACCC 592
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
Sbjct 538 CTACAATCCCTACCAGTATTACAATGCATATGGGAGTGGTCAAGATTGGACTGACTACGC 597
Query 593 AGCTTACACAAATCCTGAGGGTGTTGACATGAATTCTGGAATTTATGGAGAGAATGGGAC 652
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 AGCTTACACCAATCCTGAGGGTGTTGACATGAATTCTGGAATTTATGGAGAGAATGGAAC 657
Query 653 TGTTGTGTATCCTCAGGGTTATGGGTATGCAGCGTATCCTTACTCGCCAGCAACTAGCCC 712
|||| |||||||||||||||||||||||||| | ||||||||||||||||| || |||||
Sbjct 658 TGTTCTGTATCCTCAGGGTTATGGGTATGCAACATATCCTTACTCGCCAGCGACAAGCCC 717
Query 713 TGCTCCACAGCTTGGCGGGGAAGGGCAGTTGTACGGTGCTCAGCAGTATCAGTATCCTAA 772
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 718 TGCTCCACAGCTTGGCGGGGAAGGGCAGTTGTATGGTGCTCAGCAGTATCAGTATCCTAG 777
Query 773 CTATTTTCCAAACAGTGGACCGTATGCTTCATCTGTGGCTACACCTACCCAGCCGGATCT 832
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 778 CTATTTTCCAAACAGTGGACCGTATGCTTCATCTGTGGCTACTCCTAACCAGGCGGATCT 837
Query 833 CTCTGCAAACAAACCTGCTGGTGTGAAGACACTACCTGCGGATAGCAATAATGTTGCTTC 892
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 CTCTGCAAACAAAGCTGCTGGTGTGAAGACACTAACTGCGGATAGCAATAATGTTGCTTC 897
Query 893 TGCTGCTGGTATCACAAAAGGAAGTAATGGATCAGCTCCAGTGAAACCAACTAACCAGGC 952
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 TGCTACTGGTATCACAAAAGGAAGTAATGGATCAGCTCCAGTGAAACCAACTAACCAGAC 957
Query 953 TACCCTTAACACCTCAAGTAATTTGTATGGTATGGGTGCTCCAGGAGGAGGTTTGGCTGC 1012
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 TACACTTAACACCTCAAGTAATTTGTATGGTATGGGTGCTCCAGGAGGAGGTTTCGCTGC 1017
Query 1013 TGGTTATCAGGACCCCAGGTATGCCTATGAAGGGTATTATGCTCCTGTGCCGTGGCACGA 1072
|||||||||||| || ||||||| |||||| |||||||||||||||||||||||||| ||
Sbjct 1018 TGGTTATCAGGAGCCTAGGTATGGCTATGATGGGTATTATGCTCCTGTGCCGTGGCATGA 1077
Query 1073 TGGCTCTAAGTACTCTGATGTGCAGAGACCTGTTTCTGGTAGTGGAGTTGCATCCTCCTA 1132
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGGCTCTAAGTACTCAGATGTGCAGAGACCTGTTTCTGGTAGTGGAGTTGCATCCTCCTA 1137
Query 1133 TTCTAAGTCTAGCACAGTACCTTCATCGAGGAATCAAAACTACCGCTCAAATTCTCACTA 1192
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1138 TTCTAAGTCTAGCACTGTACCTTCATCAAGGAATCAAAACTACCGCTCTAATTCTCATTA 1197
Query 1193 CACGAGCGTGCACCAGCCTTCATCAGTGACTGGCTATGGTACAGCTCAGGGGTACTACAA 1252
|||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct 1198 CACGAGTATGCACCAGCCTGCATCAGTGACGGGCTATGGTACAGCTCAGGGATACTACAA 1257
Query 1253 CAGGATGTATCAGAACAAGTTATATGGTCAGTATGGTAGCACAGGGAGATCTGCTTTGGG 1312
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1258 CAGGATGTATCAAAACAAGTTGTATGGTCAGTATGGTAGTACAGGGAGATCTGCTTTGGG 1317
Query 1313 TTATGGTTCATCTGGGTATGATTCAAGAACAAATGGAAGAGGATGGGCGGCCACAGACAA 1372
||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1318 TTATGGTTCTTCTGGGTATGATTCAAGAACCAATGGAAGAGGATGGGTGGCCACAGACAA 1377
Query 1373 CAAATACAGAAGCTGGGGCAGGGGTAACAGTTACTATTACGGAAATGAGAACAATGTAGA 1432
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CAAATACAGAAGCTGGGGAAGGGGTAACAGTTACTATTACGGAAATGAGAACAATGTAGA 1437
Query 1433 TGGTTTGAATGAACTTAACAGGGGACCTAGAGCTAAGGGCACAAAGAACCAGAAGGGAAA 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGGTTTGAATGAACTTAACAGGGGACCTAGAGCTAAGGGCACAAAGAACCAGAAGGGAAA 1497
Query 1493 TCTAGATGATAGCTTAGAGGTTAAGGAGCAGACTGGAGAATCAAATGTAACTGAGGTTGG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1498 TCTAGATGATAGCTTAGAGGTTAAGGAGCAGACTGGAGAATCAAATGTAACCGAGGTTGG 1557
Query 1553 GGAGGCGGATAACACATGTGTTGTTCCTGACAGAGAACAGTACAATAAAGAAGATTTCCC 1612
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GGAGGCAGATAACACATGTGTTGTTCCTGACAGAGAACAGTACAATAAAGAAGATTTCCC 1617
Query 1613 AGTGGATTATGCAAATGCCATGTTCTTTATCATCAAGTCATACAGTGAAGATGATGTGCA 1672
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1618 AGTGGATTATGCAAATGCCATGTTCTTTATCATCAAGTCGTACAGTGAAGATGATGTGCA 1677
Query 1673 CAAGAGCATTAAATATAATGTTTGGGCTAGCACACCAAATGGAAACAAGAAGCTTGCTGC 1732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TAAGAGCATTAAATATAATGTTTGGGCTAGCACACCAAATGGAAACAAGAAGCTTGCTGC 1737
Query 1733 AGCATACCAGGAAGCTCAACAGAAAGCTGGCGGCTGTCCCATCTTTCTGTTTTTCTCGGT 1792
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1738 AGCATACCAGGAAGCTCAACAGAAAGCTGGGGGCTGTCCCATCTTTCTCTTTTTCTCGGT 1797
Query 1793 CAATGCAAGTGGACAATTTGTTGGTCTTGCTGAAATGACAGGACCAGTTGATTTCAACAC 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CAATGCAAGTGGACAATTTGTTGGTCTTGCTGAAATGACAGGACCAGTTGATTTCAACAC 1857
Query 1853 AAATGTGGAGTACTGGCAGCAAGATAAGTGGACCGGCTCTTTCCCCCTCAAGTGGCATAT 1912
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1858 AAATGTGGAGTACTGGCAGCAAGATAAGTGGACTGGCTCTTTCCCCCTCAAGTGGCATAT 1917
Query 1913 TGTGAAGGATGTGCCAAACAGTTTACTGAAGCATATTA-CTTTAGAGAACAATGAGAACA 1971
|||||||||||| ||||||||||| ||||| ||||||| | || ||||||||||||||||
Sbjct 1918 TGTGAAGGATGTTCCAAACAGTTTGCTGAAACATATTACCCTT-GAGAACAATGAGAACA 1976
Query 1972 AACCTGTTACCAACAGCAGAGACACACAAGAGGTTAAGTTGGAGCAAGGTTTGAAGATTG 2031
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1977 AACCTGTTACCAACAGCAGAGACACACAAGAGGTTAAGCTGGAGCAAGGACTGAAGATTG 2036
Query 2032 TGAAAATTTTCAAGGAGCATAGCAGCAAGACTTGCATTTTGGATGATTTCTCATTCTACG 2091
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2037 TTAAAATTTTCAAGGAGCATAGCAGTAAGACTTGCATTTTGGATGATTTCTCATTCTACG 2096
Query 2092 AGGTTCGACAGAAGACTATCTT-G-G-AG-AAG-AAAGC---CA-AG---C----AA-AC 2134
|||||||||||||||||||||| | | || ||| |||| || || | || |
Sbjct 2097 AGGTTCGACAGAAGACTATCTTGGAGAAGAAAGCCAAGCAAACACAGAAACAGGTAAGAA 2156
Query 2135 CCAG------AAA--CAG-----GTAAGCGAGGAGAAGGTAACCGATGAAAAGAAGGAAT 2181
| || ||| ||| || ||||| |||||| ||||||||||||| |||||||
Sbjct 2157 CTAGAAAAAAAAATTCAGAAATCGTCAGCGAAGAGAAGATAACCGATGAAAAAAAGGAAT 2216
Query 2182 CTGCAACTGCAGAGTCAGCGAGCAAGGAATCTCCTGCAGCTGTTCAAACGTCCAGTGATG 2241
|||||||||| || ||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2217 CTGCAACTGCGGATTCAGCGAGCAAGGAATCTCCTTCAGCTGTTCAAACTTCCAGTGATG 2276
Query 2242 TTAAGGTTGCTGAGAATGGGTCTGTTGCTAAACCAGTCACAGGCGATGTGGTGGCAAATG 2301
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2277 TCAAGGTTGCTGAGAATGGGTCGGTTGCTAAACCAGTCACAGGCGATGTGGTGGCAAATG 2336
Query 2302 GTTGCTAACTAAGAGGATGGTGTCGCTCACGGCATGGGCATAAAACTGACTAGAGATGAA 2361
||||||| || ||||||||| ||||||||||||||| ||||||||| ||| ||||| |||
Sbjct 2337 GTTGCTAGCTTAGAGGATGG-GTCGCTCACGGCATGAGCATAAAACGGACAAGAGACGAA 2395
Query 2362 GATATGAACAATCCCGTTTAAC-GTTTCTCTTGAGAAGAAGATTGCCGTGAGCCTTGAAG 2420
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 2396 GATATGAACAATCCCGTTT-ACAGTTTCTCTTGAGAAGAAGACTGCCGTGAGCCTTGAAG 2454
Query 2421 CATGGAAGGAGCTTTAGTACCTGAGACGGATCCGTTTCTTTGCCCTTAGAAGTTT-AAAT 2479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2455 CATGGAAGGAGCTTTAGTACCTGAGACGGATCCGTTTCTTTGCCCTTAGAAGTTTTAAAT 2514
Query 2480 CCCAGTTAtttttttttcaatcttttcttgttttcatttttccttttcttcAAAATCGCA 2539
||||| |||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 2515 CCCAGCTATTTTTTTTTCAATCATTTCTTGTTTTCATTTTTCCTTATCTTTAAAATCGCA 2574
Query 2540 GTCTCGTTACAAGTTTATGTTGGGTT-TCTTTTTCATTTTCT-GTTGTTCCTACCCTGTA 2597
|| |||||||||||||||||||| || | |||||| ||||| ||| | | | ||||
Sbjct 2575 GTGTCGTTACAAGTTTATGTTGGTTTATTTTTTTC-TTTTCAAGTT-T-CATTTTCTGTT 2631
Query 2598 AAAATGCGCATAGGACCT--ACTAAATC-GTGGGAAGAATTAGAGAAAAGGAGATAAAAG 2654
| | | | || ||| | |||| |||||||||||||||||||||||||||||||
Sbjct 2632 GA--T-C-C-TAC--CCTGTAAAAAATTAGTGGGAAGAATTAGAGAAAAGGAGATAAAAG 2684
Query 2655 CAGGGTGGGAttttgttttttca-tgtctgttggatttttaggcagagtttt--c--ttt 2709
|||||||||||||||||||| || | |||||||||||| ||||| | ||||| | |||
Sbjct 2685 CAGGGTGGGATTTTGTTTTT-CAATTTCTGTTGGATTTATAGGCCGCGTTTTTTCAGTTT 2743
Query 2710 tc-ttt--tg-gtttcttgctttggtttcAGACTTGACTCTCTTGAGTCGTTTAGAATTT 2765
|| ||| | |||||||| ||||||||||||||||||||| | |||| ||||||||| |
Sbjct 2744 TCCTTTCATTTGTTTCTTGTTTTGGTTTCAGACTTGACTCTGTGGAGTTGTTTAGAATCT 2803
Query 2766 GAGATGGTCTTTTGCCTCTCTC-GTC-T-T----GTTTCTGTCATTCTCCAAAGTTATCT 2818
|||||||||||||||||||||| ||| | | |||| |||||||||||||||||||||
Sbjct 2804 GAGATGGTCTTTTGCCTCTCTCTGTCCTGTTTTTGTTTGTGTCATTCTCCAAAGTTATCT 2863
Query 2819 GAATCAATCCATGTTTTAAGATTTTCAAAGCAAGGAGATAAGTATTGTTG 2868
||||| |||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2864 GAATCGATCCATGTTT-AAGATTTTCAAAATAAGGAGATAAGTATTGTTG 2912
> Ahg337630 jgi|Araly1|337630|fgenesh1_pg.C_scaffold_1004195
Length=1761
Score = 1112 bits (602), Expect = 0.0
Identities = 988/1167 (85%), Gaps = 55/1167 (5%)
Strand=Plus/Plus
Query 988 GTGCTCCAGGAGGAGGT-TTGGCTGCTGGTTATCAGGACCCCAGGTATGCCTATGAAGGG 1046
|||||| ||||| ||| || ||||||||||||||||| ||||||||| ||||||| |||
Sbjct 530 GTGCTCTTGGAGGTGGTCTT-GCTGCTGGTTATCAGGATCCCAGGTATACCTATGATGGG 588
Query 1047 TATTATGCTCCTGTGCCGTGGCACGATGGCTCTAAGTACTCTGATGTGCAGAGACCTGTT 1106
| ||| ||| ||| | ||||||||||||||||| | ||| ||||||||||| |||||
Sbjct 589 TTTTACAATCCCGTGTCATGGCACGATGGCTCTAACTTCTCAGATGTGCAGAGGTCTGTT 648
Query 1107 TCTGGTAGTGGAGTTGCATCCTCCTATTCTAAGTCTAGC-AC-A-GTACCTTCATCGAGG 1163
|||| ||||||||||||||||| ||||||||| ||| | || | |||||| | || |||
Sbjct 649 TCTGCCAGTGGAGTTGCATCCTCATATTCTAAGGCTAACAACAATGTACCTGCGTCTAGG 708
Query 1164 AATCAAAACTACCGCTCAAATTCTCACTACACGAGCGTGCACCAGCCTTCAT-CAGTGAC 1222
||||||||| | ||||| ||||| || ||||| || || |||||||| ||| || ||||
Sbjct 709 AATCAAAACCATCGCTCCAATTCGCATTACACAAGTATGTACCAGCCTGCATCCA-TGAC 767
Query 1223 TGGCTATGGTACAGCTCAGGGGTACTACAACAGGA-TGTA-TCAGAACAAGTTATATGGT 1280
|| ||| | |||||||||| |||||| ||| || |||| || ||||||| |||||||
Sbjct 768 AGGTTAT-G--CAGCTCAGGGTTACTACGACA-GAGTGTACCCA-AACAAGTCATATGGT 822
Query 1281 CAGTATGGTAGCACAGG-GAGATCTGCTTTGGGTTATGGTTCATCTGGGTATGATTCAAG 1339
|||||||||||||| || |||||||| | |||| |||||||| ||||| |||||||||||
Sbjct 823 CAGTATGGTAGCAC-GGTGAGATCTGGTATGGGCTATGGTTCTTCTGGATATGATTCAAG 881
Query 1340 AACAAATGGAAGAGGATGGGC-GGCCACAGACAACAAATACAGAAGCTGGGGCAGGGGTA 1398
|||||| | |||||||| ||| | | || || |||||||| |||||| |||| |||||||
Sbjct 882 AACAAACGAAAGAGGAT-GGCTGACTACGGAAAACAAATATAGAAGCCGGGGAAGGGGTA 940
Query 1399 ACAGTTACTAT-TACGGAAATGAGAACAATGTAGATGGTTTGAATGAACTTAACAGGGGA 1457
||||||||| | || |||||||||||| || | ||||| |||||||||| ||||||||
Sbjct 941 ACAGTTACT-TCTATGGAAATGAGAAC-AT-T-GATGGCCTGAATGAACTAAACAGGGGC 996
Query 1458 CCTAGAGCTAAGGGCACAAAGAACCAGAAGGGAAATC-TAGATGATAGCTT--A-GAGGT 1513
|||||||| |||||||| |||||||| || ||| | | |||| | |||||| | |||||
Sbjct 997 CCTAGAGCCAAGGGCACGAAGAACCA-AAAGGACACCATAGAGGTTAGCTTAGAGGAGGT 1055
Query 1514 TAAGGAGCAGAC--TGGA-GAATCAAATGTAACTGAGGTTGGGGAGGCGGATAACACATG 1570
|| |||||||| | || |||||||| | ||||| |||| | | | | |||||
Sbjct 1056 GAAAGAGCAGACGTTTGATGAATCAAA--T-ACTGA------GGAGACTG-T-A-ACATG 1103
Query 1571 TGTTGTTCCTGACAGAGAACAGTACAATAAAGAAGATTTCCCAGTGGATTATGCAA-ATG 1629
||| |||| || |||||| ||||||| | ||| ||||| ||||| || ||| || |||
Sbjct 1104 CGTTCTTCCAGATAGAGAAGAGTACAACAGAGACGATTTTCCAGTTGAGTAT-AAAGATG 1162
Query 1630 CCATGTTCTTTATCATCAAGTCATACAGTGAAGATGATGTGCACAAGAGCATTAAATATA 1689
| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 1163 CTATGTTCTTTATCATCAAGTCGTACAGTGAAGATGATGTGCATAAGAGCATCAAATATA 1222
Query 1690 ATGTTTGGGCTAGCACACCAAATGGAAACAAGAAGCTTGCTGCAGCATACCAGGAAGCTC 1749
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1223 ATGTTTGGGCTAGCACCCCAAATGGAAACAAGAAGCTTGCTGCTGCATATCAGGAGGCTC 1282
Query 1750 AACAGAAAGCTGGCGGCTGTCCCATCT-TT-CTGTTTTTCTCGGTCAATGCAAGTGGACA 1807
| |||||| |||| ||||| ||| | | || || || |||||| |||| |||||||||||
Sbjct 1283 AGCAGAAATCTGGTGGCTG-CCC-TGTGTTCCTCTTCTTCTCGATCAACGCAAGTGGACA 1340
Query 1808 ATTTGTTGGTCTTGCTGAAATGACAGGACCAGTTGATTTCAACACA-AATGTGGAGTACT 1866
||||||||| ||||| ||||||| |||||||||||||||||||| | ||| | |||||||
Sbjct 1341 ATTTGTTGGGCTTGCGGAAATGAAAGGACCAGTTGATTTCAACA-ATAATATTGAGTACT 1399
Query 1867 GGCAGCAAGATAAGTGGACCGGCTC-TTTCCCCCTCAAGTGGCATATTGTGAAGGATGTG 1925
|||| || ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1400 GGCAACAGGATAAGTGGACTGGCTCATTT-CCCCTCAAGTGGCATATTGTGAAGGATGTG 1458
Query 1926 CCAAACAGTTTACTGAAGCATATTACTTTAGAGAACAATGAGAACAAACCTGTTACCAAC 1985
|| |||||||| || |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1459 CCCAACAGTTTGCTTAAGCATATTACTCTAGAGAACAATGAGAATAAACCTGTTACCAAC 1518
Query 1986 AGCAGAGACACACAAGAGGTTAAGTTGGAGCAAGGTTTGAAGATTGTGAAA-ATTTTCAA 2044
|| ||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||
Sbjct 1519 AGTAGAGACACACAAGAGGTTAAGTTGGAGCAGGGTTTGAAGGTTGT-AAAGATTTTCAA 1577
Query 2045 GGAGCATAGCAGCAAGACTTGCATTTTGGATGATTTCTCATTCTACGAGGTTCGACAGAA 2104
|||||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| ||
Sbjct 1578 GGAGCATACCAGCAAGACATGCATTTTGGATGATTTCTCGTTCTACGAGGCTCGACAAAA 1637
Query 2105 GACTATCTTGGAGAAGAAAGCCAAGCA 2131
|||||| |||||||||||||| |||||
Sbjct 1638 GACTATTTTGGAGAAGAAAGCTAAGCA 1664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108290566535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5