BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13500.1

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478737 jgi|Araly1|478737|fgenesh2_kg.3__1438__AT3G13500.1         359    8e-99


> Ahg478737 jgi|Araly1|478737|fgenesh2_kg.3__1438__AT3G13500.1
Length=314

 Score =  359 bits (194),  Expect = 8e-99
 Identities = 294/336 (88%), Gaps = 32/336 (10%)
 Strand=Plus/Plus

Query  1    ATGGCGACGGTGGCGAAATTTTCCACCGACAAGTGGCAGCGGATGAGGAGGGTTCCGTCG  60
            |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGACGGTGGCGAACGTATCCACCGACAAGTGGCAGCGGATGAGGAGGGTTCCGTCG  60

Query  61   TCGGAGTTGAT-GAATACGCAACAGCTTATGGAGGTGGCTTGTTGCCTCCCTCTTAGTCA  119
            |||||| | || |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCGGAGAT-ATTGAATACCCAACAGCTTATGGAGGTGGCTTGTTGCCTCCCTCTTAGTCA  119

Query  120  TCTCTTTATCTGTCTTTGGGAGTTTCTGTGTTTCTCCGTATCCgattatgattctgatga  179
            |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  120  TCTCTTCATCTGTCTTTGGGAGTTTCTGTGTTTCTCCATATCCGATTATGATTCTGATGA  179

Query  180  tgattatgattatgttgatgatgatgatgatgatgatgatgttgatgatgacgatgTGGT  239
            ||||||||||   |   ||||||||| |  ||||||||| |   ||| || |  | ||  
Sbjct  180  TGATTATGAT---G---ATGATGATG-T--TGATGATGACG---ATG-TG-C--T-TG--  220

Query  240  TGCTTTTGATCATAATAGTAACGGCGATTTTGATGATCATGGGTCTTCTTC--C-T-T--  293
              ||||||||||||||||||||||||||| |||||||||||||||||||||  | | |  
Sbjct  221  --CTTTTGATCATAATAGTAACGGCGATTATGATGATCATGGGTCTTCTTCATCATCTAA  278

Query  294  ---GGATTTTGATGACTATTACCATTACTCGGACTC  326
               ||||||||||||||||||||||||| |||||||
Sbjct  279  CTTGGATTTTGATGACTATTACCATTACCCGGACTC  314



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11790077001


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5