BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13510.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929096 jgi|Araly1|929096|scaffold_301553.1 2089 0.0
Ahg474597 jgi|Araly1|474597|fgenesh2_kg.1__4551__AT1G55360.1 1293 0.0
Ahg483545 jgi|Araly1|483545|fgenesh2_kg.4__2605__AT2G44210.2 267 3e-70
> Ahg929096 jgi|Araly1|929096|scaffold_301553.1
Length=1306
Score = 2089 bits (1131), Expect = 0.0
Identities = 1249/1306 (96%), Gaps = 7/1306 (1%)
Strand=Plus/Plus
Query 257 TTTCTGGGTTTATTGCGACAATGGGAGCTGAGCATTTTAGCCTGGTGAAGTTCAATAGAG 316
|||||||||||| || |||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 1 TTTCTGGGTTTACTGTGACAATGGGAGCTGTGCATTTTAGCCTGGTGAAGTTAAACAGAG 60
Query 317 GTTTCTTTGTGTGTTTATGG--GT----GATGCTCTCGCTATCTTGCGCAGCAGCGAGCT 370
||||||| |||||||||||| || ||||||||||||||| |||||||||||||| |
Sbjct 61 GTTTCTTAGTGTGTTTATGGCTGTGGGGGATGCTCTCGCTATCCTGCGCAGCAGCGAGGT 120
Query 371 ATGGCTCTTCAAGGCAAAAGTTTGAGGTGAAGAAGCATTTGAATAGGCTCAACAAACCTC 430
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATGGCTCTTCAAGGCAGAAGTTTGAGGTGAAGAAGCACTTGAATAGGCTCAACAAACCTC 180
Query 431 CTGTTAAGACTATTCAGAGTCCAGATGGAGATATAATCGACTGTATTCCTATTTCAAAGC 490
|||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 181 CTGTTAAGACCATTCAGAGTCCAGATGGAGATATAATCGACTGTGTTCCTATCTCAAAGC 240
Query 491 AGCCAGCTTTTGACCACCCCTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACC 550
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCCAGCTTTTGACCACCCTTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACC 300
Query 551 ACCCAGAAGGGCTCTTTGATGACAATAAGGTATCTGCTGAACCAAAGGGGAAAGAAACTC 610
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 301 ACCCTGAAGGGCTCTTTGATGACAATAAGGTATCTGCAAAACCAGAGGGGAAAGCAACTC 360
Query 611 ATATCCCTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACCATTCCCATGAGGA 670
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 361 ATATCCCTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACGATTCCCGTGAGGA 420
Query 671 GGACAAGGGAGGATGATGTGTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGC 730
|||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 421 GGACAAAGGAGGATGATGTGTTGAGAGCAAGTTCAATCAAAAGATACGGCAAGAAGAAGC 480
Query 731 ATAGGTCTGTTCCTATTCCTAAATCTGCGGAACCCGACCTCATCAACCAAAATGGTCATC 790
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 481 ATAGGTCTGTTCCTATTCCTAAATCTGCAGAACCTGACCTCATCAACCAAAATGGTCATC 540
Query 791 AACACGCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACTTTGAATG 850
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCACGCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACTTTGAATG 600
Query 851 TGTGGGAGCCAAAGATACAGAACACAAACGAATTCAGCTTGTCGCAGATATGGCTTTTGG 910
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 TGTGGGAGCCAAAGATACAGAACACAAATGAATTCAGCTTGTCGCAGATATGGCTTTTGG 660
Query 911 GGGGTTCCTTTGGACAAGATCTTAACAGTATTGAAGCTGGCTGGCAGGTGAGTCCGGATC 970
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 661 GTGGTTCCTTTGGACAAGATCTTAACAGCATTGAAGCTGGCTGGCAGGTGAGCCCGGATC 720
Query 971 TATATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTA 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TATATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTA 780
Query 1031 CCGGTTGCTACAATCTTCTTTGCTCAGGTTTCATTCAAATCAACAGTGACATAGCAATGG 1090
||||||||||||| | ||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 781 CCGGTTGCTACAACCATCTCTGCTCGGGTTTTATTCAAATCAACAGTGACATAGCAATGG 840
Query 1091 GAGCAAGCATCTCACCAGTCTCTGGATACCGCAATTCCCAGTATGATATCAGTATTCTAA 1150
|||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||||
Sbjct 841 GAGCAAGCATTTCACCAGTCTCTGGATATCGTAATTCCCAGTACGATATTAGTATTCTAA 900
Query 1151 TCTGGAAGGATCCAAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTGG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGGAAGGATCCAAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTGG 960
Query 1211 GGTACTGGCCATCATTTCTGTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGGG 1270
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTACTGGCCATCATTTCTCTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGGG 1020
Query 1271 GAGGAGAAGTTGTGAACTCACAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGTG 1330
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGGAGAAGTTGTGAACTCGCAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGTG 1080
Query 1331 GTCACTTTCCAGAAGAAGGTTTCAGTAAAGCAAGTTACTTTCGGAACATTCAAGTCGTAG 1390
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 GTCACTTCCCAGAAGAAGGTTTCAGCAAAGCAAGTTACTTTCGGAACATTCAAGTCGTAG 1140
Query 1391 ATGGATCCAACAACCTCAAAGCACCAAAAGGACTTGGTACATTCACCGAGAAGTCCAACT 1450
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1141 ATGGATCTAACAACCTCAAAGCACCAAAAGGACTGGGTACATTCACCGAGAAGTCCAACT 1200
Query 1451 GTTATGATGTTCAAACGGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGTGGTC 1510
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTTATGATGTTCAAACCGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGTGGTC 1260
Query 1511 CCGGTAAGAACAAGAACTGCCCATAAACCCGGGCATGTGTAGTGTT 1556
|||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1261 CCGGTAAGAACAAGAACTGCCCATAAGCC-GGGCATGTGTAGTGTT 1305
> Ahg474597 jgi|Araly1|474597|fgenesh2_kg.1__4551__AT1G55360.1
Length=1724
Score = 1293 bits (700), Expect = 0.0
Identities = 1102/1292 (85%), Gaps = 43/1292 (3%)
Strand=Plus/Plus
Query 273 GACAATGGGA-G-CT-GAGCATTTTAGC-CTGGTGAAGTTCA-ATAGAGGTTTCTTTGTG 327
|||||||||| | | | |||| ||||| | ||||||||| | |||||||||||| |||
Sbjct 150 GACAATGGGAGGAGTGGTGCATCTTAGCAC-GGTGAAGTT-AGCTAGAGGTTTCTTAGTG 207
Query 328 TGTTTA------TGGGTGATGCTCTCGCTATCTTGCGCAGCAGCGAGCTATGGCTCTTCA 381
|||||| |||| | | |||||||||| | | || || || | ||| |||
Sbjct 208 TGTTTATTTCTTTGGGGGGTTTTCTCGCTATCAT--AC-GCTGCTAGGTCCGGCGAATCA 264
Query 382 AGGCAAAAGTTTGAGGTGAAGAAGCATTTGAATAGGCTCAACAAACCTCCTGTTAAGA-C 440
| ||| |||||||| ||||||||||||||||| || | ||||||||| |||| || | |
Sbjct 265 AAGCAGAAGTTTGAAGTGAAGAAGCATTTGAACAGATTGAACAAACCTGCTGTCAAAAGC 324
Query 441 TATTCAGAGTCCAGATGGAGATATAATCGACTGTATTCCTATTTCAAAGCAGCCAGCTTT 500
|||||||| |||||||| ||||| || |||||| |||| || |||||||| ||||||||
Sbjct 325 -ATTCAGAGCCCAGATGGTGATATTATTGACTGTGTTCCAATCTCAAAGCAACCAGCTTT 383
Query 501 TGACCACCCCTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACCACCCAGAAGG 560
||| || || |||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct 384 TGATCATCCGTTCCTCAAAGGTCACAAGATTCAGATGAGGCCTAATTACCATCCTGAAGG 443
Query 561 GCTCTTTGATGACAA-TAAG-GTAT-CTGCTGAACCAAAGGGGAAAGAAACT-CATATCC 616
|||||||||||||| ||| || | || || || |||| | |||||||| | |||||||
Sbjct 444 ACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAGAAA-TGCATATCC 502
Query 617 CTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACCATTCCCATGAGGAGGACAA 676
||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 503 CTCAGTTGTGGCATCGATATGGTAAATGTACTGAAGGAACCATTCCCGTGAGGAGGACAA 562
Query 677 GGGAGGATGATGTGTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGCATAGGT 736
||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 563 AGGAAGATGATGTTTTGAGAGCAAGTTCTGTTAAAAGATATGGCAAGAAGAAGCGTAGAA 622
Query 737 CTGTTCCTATT-CCTAAATCTGCGGAACCCGACCTCATCAACCAAAATGGTCATCAACAC 795
||| ||| || ||||||||||| ||||| ||||| || ||||||| |||||| || ||
Sbjct 623 GTGTCCCT-TTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGCAT 681
Query 796 GCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACT-TTGAATGTGTG 854
|||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||
Sbjct 682 GCCATAGCTTATGTGGAAGGAGATAAGTACTATGGAGCTAAGGCGACTATT-AACGTGTG 740
Query 855 GGAGCCAAAGATACAGAACA-CA-AACGAATTCAGCTTGTCGCAGATATGGCTT-TTGGG 911
|||||||||||||||| || || || || ||||| ||||| |||||||||||| || ||
Sbjct 741 GGAGCCAAAGATACAG--CAGCAGAATGAGTTCAGTTTGTCACAGATATGGCTTCTT-GG 797
Query 912 GGGTTCCTTTGGACAAGATCTTAACAGTATTGAAGCTGGCTGGCAGGTGAGTCCGGATCT 971
|| || || ||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 798 TGGCTCATTCGGACAAGATCTTAACAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATCT 857
Query 972 ATATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTAC 1031
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 858 GTATGGTGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTAC 917
Query 1032 CGGTTGCTACAATCTTCTTTGCTCAGGTTTCATTCAAATCAACAGTGACATAGCAATGGG 1091
|||||||||||| | ||| ||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 918 CGGTTGCTACAACCATCTCTGCTCGGGTTTTATTCAAGTCAACAGTGACATAGCAATGGG 977
Query 1092 AGCAAGCATCTCACCAGTCTCTGGATACCGCAATTCCCAGTATGATATCAGTATTCTAAT 1151
||||||||| || || ||||||||||| || ||||| ||||| |||||||||||||| ||
Sbjct 978 AGCAAGCATTTCCCCGGTCTCTGGATATCGTAATTCGCAGTACGATATCAGTATTCTGAT 1037
Query 1152 CTGGAAGGATCC-AAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTGG 1210
|||||||||||| |||| ||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1038 CTGGAAGGATCCTAAAG-AGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTGG 1096
Query 1211 GGTACTGGCCATCATTTCTGTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGGG 1270
| || |||||||| ||||| ||||||||| |||| || |||||||||||||| |||||||
Sbjct 1097 GCTATTGGCCATCTTTTCTCTTCTCCTACTTAACTGAGAGTGCATCGATGATTGAATGGG 1156
Query 1271 GAGGAGAAGTTGTGAACTCACAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGTG 1330
|||||||||| |||||||| || ||||| ||||| ||||||| || |||||||| ||||
Sbjct 1157 GAGGAGAAGTCGTGAACTCGCAATCAGATGGCCAGCACACTTCAACGCAGATGGGCAGTG 1216
Query 1331 GTC-ACTTTCCAGAAGAAGG-TTTCAGTAAAGCAAGTTACTTTC-GGAACATTCAAGTCG 1387
||| | |||||||||||||| ||| || |||||||||||||| | |||||||||| || |
Sbjct 1217 GTCGA-TTTCCAGAAGAAGGCTTT-AGCAAAGCAAGTTACTT-CAGGAACATTCAGGTAG 1273
Query 1388 TAGATGGATCCAACAACCTCAAAGCACCAAAAGGACTTGGTACATTCACCGAGA-AGTCC 1446
| ||||| || ||||||||||| ||||| ||||||||||| |||||||| || | ||||
Sbjct 1274 TTGATGGGTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGA-ACAGTCT 1332
Query 1447 AACTGTTATGATGTTCAAACGGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGT 1506
|||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| ||
Sbjct 1333 AACTGTTATGATGTTCAAACCGGAAGCAATGATGATTGGGGCCATTACTTTTACTATGGA 1392
Query 1507 GGTCCCGGTAAGAACAAGAACTGCCCATAAAC 1538
||||| ||||| ||| |||| || ||||||||
Sbjct 1393 GGTCCTGGTAAAAACCAGAAGTGTCCATAAAC 1424
> Ahg483545 jgi|Araly1|483545|fgenesh2_kg.4__2605__AT2G44210.2
Length=1708
Score = 267 bits (144), Expect = 3e-70
Identities = 481/640 (75%), Gaps = 37/640 (6%)
Strand=Plus/Plus
Query 778 CAAAATGGTCATCAACACGCCATAGCT-TATGTGGAAGGA-GATAAGTACTACGGAGCTA 835
|||||||||||||| ||||| ||| | ||||| ||| || | || | |||||| ||||
Sbjct 689 CAAAATGGTCATCAGCACGCGATA-ATGTATGTCGAA-GATGGTATTTTCTACGGGGCTA 746
Query 836 AGGCGACTTTGAATGTGTGGGAGCCAAAGAT-ACAG-AA--CACAAACGAATTCAGCTTG 891
| |||| | ||||| ||| |||| ||| | | || | | || || || ||||||
Sbjct 747 AAGCGAAGATAAATGTATGGAAGCC--TGATGTC-GAAATGC-CTAATGAGTTTAGCTTG 802
Query 892 TCGCAGATATGGCTTTTGGGGGGTTCCTTTGGAC-AAGATCTTAACAGTATTGAAGCTGG 950
| ||||| ||| ||||||| || ||| || |||||||| ||||||||||||||
Sbjct 803 GCTCAGATTTGGGTTTTGGGTGG-AAATTTTAACTCTGATCTTAATAGTATTGAAGCTGG 861
Query 951 CTGGCAGGTGAGTCC-GGATCTATATGGAGACAATAACACAAGACTCTTCACTTACTGGA 1009
|||||||| || || || | ||||| || || || |||||||||||||| ||||
Sbjct 862 TTGGCAGGTCAGCCCACAAT-TGTATGGTGATAACCGGACCAGACTCTTCACTTATTGGA 920
Query 1010 CTAGTGATGCCTATCAA-GCTACCGGTTGCTACAATCTTCTTTGCTCAGG-TTTCATTCA 1067
|||||||||| || ||| || || || ||||| |||| ||| |||||||| ||| ||||
Sbjct 921 CTAGTGATGCATACCAAGGC-ACAGGCTGCTATAATCATCTGTGCTCAGGATTT-GTTCA 978
Query 1068 AATCAACAGTGACATAGCAATGGGAGCAAGC-ATCTCACCAGTCTCTGGA-TACCGCAAT 1125
||| || || || || |||||||| | | | ||||| || | || | | ||| | ||
Sbjct 979 AATTAATAGAGAAATCGCAATGGGTG-GATCGATCTCTCCTTTATC-GAACTACGGAAAC 1036
Query 1126 TCCCAGTATGATATCAGTATTCTAATCTGGAAGGATCCAAAGGAGGGACATTGGTGGATG 1185
|| |||||||| || | || || ||||||||||| ||||| || |||||||||||| |
Sbjct 1037 TCTCAGTATGACATTACCATACTCATCTGGAAGGACCCAAAAGAAGGACATTGGTGGTTA 1096
Query 1186 CAATTTGGGA-ATG-GGTATGTTTTGGGGTACTGGCCATCATT-TCTGTTCTCCTACCTA 1242
|||||| ||| | | || | | || ||||||||| | || || ||||| ||| ||
Sbjct 1097 CAATTT-GGAGA-GAAATACATAATCGGATACTGGCCAGC-TTCACTCTTCTCTTACTTA 1153
Query 1243 ACAGAAAGTGCATCGATGATCGAATGGGGAGGAGAAGTTGTGAACTCACAGTC--AG-AA 1299
||||||||||||||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct 1154 TCAGAAAGTGCATCGATGATCGAATGGGGAGGCGAAGTGGTTAACTCGCAGTCCGAGGAA 1213
Query 1300 GGCCACCACACTTGGACACAGATGGGAAGTGGTCAC-TTTCCAGAAGAAGGTTTCAGTAA 1358
|| || ||||| || |||||||||||||| | ||| |||| ||||||| | ||
Sbjct 1214 GGACAACACACGACCACTCAGATGGGAAGTGGG-AGGTTTGCAGAGGAAGGTTGGGGAAA 1272
Query 1359 AGCAAGTTACTTTCG-GAACATTCAAGTCGTAGATGGATC 1397
|||||||||||| | |||| ||||||| || ||||||||
Sbjct 1273 AGCAAGTTACTT-CAAGAACGTTCAAGTAGTCGATGGATC 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5